Prupe.4G241100_v2.0.a1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Reverse (-)
15857353 .. 15858306
954 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G241100.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 456 bp
ATGACCAAAGCACTCCTTCCTCTCCTTCAGCTATCTGATTCACCAAGAGTTGTCAGTCTTTCTTCCGGCATGGGATCGTTAAAGCACATACCAAATGAATGGGCCAAAGGGGTGTTAAGTGATGCCGAGAAACTTACAGAAGAGAGAATAGATGATGTTTTGAATGAGTTTCTCAAAGACTTCAAAGAAGATATTCTAGAAACCAAAGGTTGGCCTACGTCCCTCTCTACCTATATACTCTCGAAAGCAGCCGTGAACGCGTTCACTAGAATGATGGCCAGGAAGTACCCAAACATCTGCATCAATAGTGTTGTCAAAACAAATATGAACTTCATCAATACTGGCATGTTAACCATTGATGAAGGTGCTGAGAGTGTTGTGAGGTTAGCTATGGATATGCAGACAAAGCTTGACATACTGCAGAGTTCCAATGAAAAGACTCTGGAAGACCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

152

Amino Acids

16.88

Weight (kDa)

5.06

Isoelectric Point (pI)

32.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 210
AccII CGCG 1 cut(s) 260
AclWI GGATC 1 cut(s) 82
AcoI YGGCCR 1 cut(s) 276
AcuI CTGAAG 1 cut(s) 11
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 1 cut(s) 210
AflIII ACRYGT 1 cut(s) 258
AgsI TTSAA 2 cut(s) 163, 184
AjnI CCWGG 1 cut(s) 278
AluBI AGCT 3 cut(s) 31, 389, 409
AluI AGCT 3 cut(s) 31, 389, 409
AlwI GGATC 1 cut(s) 82
AoxI GGCC 3 cut(s) 102, 212, 276
ApeKI GCWGC 1 cut(s) 248
Asp700I GAANNNNTTC 2 cut(s) 192, 260
AspS9I GGNCC 1 cut(s) 102
AsuHPI GGTGA 1 cut(s) 33
BalI TGGCCA 1 cut(s) 278
BbvI GCAGC 1 cut(s) 260
BccI CCATC 1 cut(s) 268
BceAI ACGGC 1 cut(s) 236
BciT130I CCWGG 1 cut(s) 280
BfaI CTAG 2 cut(s) 197, 267
BfmI CTRYAG 1 cut(s) 419
BisI GCNGC 1 cut(s) 249
BlsI GCNGC 1 cut(s) 250
Bme1390I CCNGG 1 cut(s) 280
BmgT120I GGNCC 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 280
BmsI GCATC 2 cut(s) 112, 309
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse1I ACTGG 1 cut(s) 346
BseBI CCWGG 1 cut(s) 280
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMII CTCAG 1 cut(s) 360
BseNI ACTGG 1 cut(s) 346
BseXI GCAGC 1 cut(s) 260
Bsh1236I CGCG 1 cut(s) 260
BshFI GGCC 3 cut(s) 104, 214, 278
BsiSI CCGG 1 cut(s) 66
BslFI GGGAC 1 cut(s) 205
BslI CCNNNNNNNGG 1 cut(s) 210
BsmFI GGGAC 1 cut(s) 205
BsnI GGCC 3 cut(s) 104, 214, 278
Bsp143I GATC 1 cut(s) 74
BspANI GGCC 3 cut(s) 104, 214, 278
BspCNI CTCAG 1 cut(s) 361
BspFNI CGCG 1 cut(s) 260
BspMAI CTGCAG 1 cut(s) 423
BspPI GGATC 1 cut(s) 82
BsrI ACTGG 1 cut(s) 346
BssMI GATC 1 cut(s) 74
Bst2UI CCWGG 1 cut(s) 280
Bst6I CTCTTC 1 cut(s) 135
BstDEI CTNAG 1 cut(s) 369
BstFNI CGCG 1 cut(s) 260
BstKTI GATC 1 cut(s) 77
BstMBI GATC 1 cut(s) 74
BstMWI GCNNNNNNNGC 2 cut(s) 257, 406
BstNI CCWGG 1 cut(s) 280
BstNSI RCATGY 1 cut(s) 349
BstSCI CCNGG 1 cut(s) 278
BstSFI CTRYAG 1 cut(s) 419
BstUI CGCG 1 cut(s) 260
BstV1I GCAGC 1 cut(s) 260
BstXI CCANNNNNNTGG 1 cut(s) 99
BsuRI GGCC 3 cut(s) 104, 214, 278
Cfr13I GGNCC 1 cut(s) 102
Csp6I GTAC 1 cut(s) 286
CviAII CATG 2 cut(s) 70, 346
CviJI RGCY 7 cut(s) 31, 104, 214, 251, 278, 389, 409
CviKI_1 RGCY 7 cut(s) 31, 104, 214, 251, 278, 389, 409
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 1 cut(s) 369
DpnI GATC 1 cut(s) 76
DpnII GATC 1 cut(s) 74
EaeI YGGCCR 1 cut(s) 276
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
Eco57I CTGAAG 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 278
FaeI CATG 2 cut(s) 73, 349
FaiI YATR 9 cut(s) 71, 89, 234, 236, 326, 347, 392, 398, 416
FalI AAGNNNNNCTT 1 cut(s) 32
FaqI GGGAC 1 cut(s) 205
FatI CATG 2 cut(s) 69, 345
Fnu4HI GCNGC 1 cut(s) 249
Fsp4HI GCNGC 1 cut(s) 249
FspBI CTAG 2 cut(s) 197, 267
GluI GCNGC 1 cut(s) 249
HaeIII GGCC 3 cut(s) 104, 214, 278
HapII CCGG 1 cut(s) 66
Hin1II CATG 2 cut(s) 73, 349
HincII GTYRAC 1 cut(s) 351
HindII GTYRAC 1 cut(s) 351
HindIII AAGCTT 1 cut(s) 407
HinfI GANTC 2 cut(s) 38, 439
HpaI GTTAAC 1 cut(s) 351
HpaII CCGG 1 cut(s) 66
HphI GGTGA 1 cut(s) 33
Hpy166II GTNNAC 3 cut(s) 256, 264, 351
Hpy188I TCNGA 1 cut(s) 37
Hpy188III TCNNGA 3 cut(s) 197, 241, 443
Hpy8I GTNNAC 3 cut(s) 256, 264, 351
HpyAV CCTTC 3 cut(s) 26, 35, 356
HpyCH4IV ACGT 1 cut(s) 218
HpyCH4V TGCA 3 cut(s) 300, 400, 421
HpyF10VI GCNNNNNNNGC 2 cut(s) 257, 406
HpyF3I CTNAG 1 cut(s) 369
HpySE526I ACGT 1 cut(s) 218
Hsp92II CATG 2 cut(s) 73, 349
KspAI GTTAAC 1 cut(s) 351
Kzo9I GATC 1 cut(s) 74
LpnPI CCDG 5 cut(s) 79, 265, 292, 327, 428
Lsp1109I GCAGC 1 cut(s) 260
LweI GCATC 2 cut(s) 112, 309
MaeI CTAG 2 cut(s) 197, 267
MaeII ACGT 1 cut(s) 218
MalI GATC 1 cut(s) 76
MboI GATC 1 cut(s) 74
MboII GAAGA 3 cut(s) 54, 152, 200
MlsI TGGCCA 1 cut(s) 278
MluI ACGCGT 1 cut(s) 258
MluNI TGGCCA 1 cut(s) 278
MlyI GAGTC 1 cut(s) 433
MnlI CCTC 3 cut(s) 30, 233, 375
Mox20I TGGCCA 1 cut(s) 278
MroXI GAANNNNTTC 2 cut(s) 192, 260
MscI TGGCCA 1 cut(s) 278
MseI TTAA 3 cut(s) 80, 116, 350
MslI CAYNNNNRTG 1 cut(s) 269
Msp20I TGGCCA 1 cut(s) 278
MspI CCGG 1 cut(s) 66
MspR9I CCNGG 1 cut(s) 280
MvaI CCWGG 1 cut(s) 280
MvnI CGCG 1 cut(s) 260
MwoI GCNNNNNNNGC 2 cut(s) 257, 406
NdeII GATC 1 cut(s) 74
NlaIII CATG 2 cut(s) 73, 349
NmeAIII GCCGAG 1 cut(s) 151
NspI RCATGY 1 cut(s) 349
PdmI GAANNNNTTC 2 cut(s) 192, 260
PfeI GAWTC 1 cut(s) 38
PflMI CCANNNNNTGG 1 cut(s) 210
PkrI GCNGC 1 cut(s) 250
PleI GAGTC 1 cut(s) 433
PpsI GAGTC 1 cut(s) 433
Psp6I CCWGG 1 cut(s) 278
PspGI CCWGG 1 cut(s) 278
PspPI GGNCC 1 cut(s) 102
PstI CTGCAG 1 cut(s) 423
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
RseI CAYNNNNRTG 1 cut(s) 269
SaqAI TTAA 3 cut(s) 80, 116, 350
SatI GCNGC 1 cut(s) 249
Sau3AI GATC 1 cut(s) 74
Sau96I GGNCC 1 cut(s) 102
SchI GAGTC 1 cut(s) 433
ScrFI CCNGG 1 cut(s) 280
SetI ASST 8 cut(s) 33, 211, 221, 233, 367, 386, 391, 411
SfaNI GCATC 2 cut(s) 112, 309
SfcI CTRYAG 1 cut(s) 419
SmiMI CAYNNNNRTG 1 cut(s) 269
SspMI CTAG 2 cut(s) 197, 267
StyD4I CCNGG 1 cut(s) 278
TaiI ACGT 1 cut(s) 221
TaqI TCGA 1 cut(s) 242
TfiI GAWTC 1 cut(s) 38
Tru1I TTAA 3 cut(s) 80, 116, 350
Tru9I TTAA 3 cut(s) 80, 116, 350
TseI GCWGC 1 cut(s) 248
TspDTI ATGAA 5 cut(s) 111, 322, 341, 375, 447
Van91I CCANNNNNTGG 1 cut(s) 210
XbaI TCTAGA 1 cut(s) 196
XceI RCATGY 1 cut(s) 349
XmnI GAANNNNTTC 2 cut(s) 192, 260
XspI CTAG 2 cut(s) 197, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.