Prupe.4G243000_v2.0.a1

Plant protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Forward (+)
16049669 .. 16050238
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G243000.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 570 bp
ATGGACCTCACCTTTGAGTTCATTAATATGACATTTGGTTCGACGAGCATCATACAGAATGTGGGGATGCTAGGTTCTTCAAGTTTGAAACACTTTATTGTGTTTTTAAGACTATTTTATCTCCCCAAGGACTCACATATTATTAATATAGGAGGGGAAGTCAAAGCTGTAAGTGCACCGAGCATTATCGAACTAAAGATGGCTGGAGTGAAAATTGTGCGGGGATCAAGCACAAGCTTATCTTTCATACGACTCGTGGACGGAATTATAGAAACTCCAAGATTACTGATTCACAACGGTAGTGAGCTTTTGTTTAGAAATATTGTTGCCTTTGAGCAATGTCATGGATGCTTTTTTTACATAAACAGTTATCTTTCCATCTTGGATGATTTTGTGACCATATCGATGGATGTGGAGTTGCTTGTTAAGAAAGGAATTTTTACAAATATGCTAAGAGACCACAATGAGGTGTCTACTCTAATTAACGACCTTGACAAAAGGGTTGTCATCTCAGACTTTTATTTTGGAAGTGTTTGTGAGGAGTTGGACCGCTATTTGAAAAGCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

190

Amino Acids

21.33

Weight (kDa)

5.7

Isoelectric Point (pI)

41.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 473
AciI CCGC 2 cut(s) 220, 550
AclWI GGATC 1 cut(s) 232
AcsI RAATTY 1 cut(s) 435
AfiI CCNNNNNNNGG 1 cut(s) 466
AgsI TTSAA 3 cut(s) 81, 88, 559
AloI GAACNNNNNNTCC 2 cut(s) 58, 90
AluBI AGCT 3 cut(s) 167, 237, 307
AluI AGCT 3 cut(s) 167, 237, 307
Alw21I GWGCWC 1 cut(s) 178
Alw26I GTCTC 1 cut(s) 450
Alw44I GTGCAC 1 cut(s) 174
AlwI GGATC 1 cut(s) 232
ApaLI GTGCAC 1 cut(s) 174
ApoI RAATTY 1 cut(s) 435
ArsI GACNNNNNNTTYG 7 cut(s) 22, 28, 54, 489, 506, 521, 538
AseI ATTAAT 2 cut(s) 24, 144
AspS9I GGNCC 2 cut(s) 4, 547
AvaII GGWCC 2 cut(s) 4, 547
BaeGI GKGCMC 1 cut(s) 178
BauI CACGAG 1 cut(s) 254
Bbv12I GWGCWC 1 cut(s) 178
BccI CCATC 3 cut(s) 193, 386, 400
BcoDI GTCTC 1 cut(s) 450
BfaI CTAG 1 cut(s) 71
Bme18I GGWCC 2 cut(s) 4, 547
BmgT120I GGNCC 2 cut(s) 4, 547
BmsI GCATC 3 cut(s) 57, 57, 338
BpmI CTGGAG 1 cut(s) 225
Bsa29I ATCGAT 1 cut(s) 404
BsaI GGTCTC 1 cut(s) 450
BsaJI CCNNGG 1 cut(s) 126
BsaXI ACNNNNNCTCC 2 cut(s) 144, 174
Bsc4I CCNNNNNNNGG 1 cut(s) 466
Bse3DI GCAATG 1 cut(s) 344
BseCI ATCGAT 1 cut(s) 404
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 4 cut(s) 72, 353, 391, 415
BseLI CCNNNNNNNGG 1 cut(s) 466
BseMI GCAATG 1 cut(s) 344
BseMII CTCAG 1 cut(s) 525
BseRI GAGGAG 1 cut(s) 554
BseSI GKGCMC 1 cut(s) 178
BshVI ATCGAT 1 cut(s) 404
BsiHKAI GWGCWC 1 cut(s) 178
BslI CCNNNNNNNGG 1 cut(s) 466
BsmAI GTCTC 1 cut(s) 450
Bso31I GGTCTC 1 cut(s) 450
Bsp1286I GDGCHC 1 cut(s) 178
Bsp143I GATC 1 cut(s) 224
BspACI CCGC 2 cut(s) 220, 550
BspCNI CTCAG 1 cut(s) 524
BspDI ATCGAT 1 cut(s) 404
BspPI GGATC 1 cut(s) 232
BspTNI GGTCTC 1 cut(s) 450
BsrDI GCAATG 1 cut(s) 344
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 1 cut(s) 224
BssSI CACGAG 1 cut(s) 254
BssT1I CCWWGG 1 cut(s) 126
Bst2BI CACGAG 1 cut(s) 254
Bst4CI ACNGT 2 cut(s) 299, 368
BstDEI CTNAG 2 cut(s) 452, 511
BstF5I GGATG 4 cut(s) 72, 353, 391, 415
BstKTI GATC 1 cut(s) 227
BstMAI GTCTC 1 cut(s) 450
BstMBI GATC 1 cut(s) 224
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstSLI GKGCMC 1 cut(s) 178
BstXI CCANNNNNNTGG 1 cut(s) 406
Bsu15I ATCGAT 1 cut(s) 404
BsuTUI ATCGAT 1 cut(s) 404
BtsCI GGATG 4 cut(s) 72, 353, 391, 415
Cfr13I GGNCC 2 cut(s) 4, 547
ClaI ATCGAT 1 cut(s) 404
CviAII CATG 2 cut(s) 344, 567
CviJI RGCY 5 cut(s) 167, 203, 237, 307, 564
CviKI_1 RGCY 5 cut(s) 167, 203, 237, 307, 564
DdeI CTNAG 2 cut(s) 452, 511
DpnI GATC 1 cut(s) 226
DpnII GATC 1 cut(s) 224
Eco130I CCWWGG 1 cut(s) 126
Eco31I GGTCTC 1 cut(s) 450
Eco47I GGWCC 2 cut(s) 4, 547
EcoT14I CCWWGG 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 2 cut(s) 347, 570
FalI AAGNNNNNCTT 2 cut(s) 226, 258
FatI CATG 2 cut(s) 343, 566
FauI CCCGC 1 cut(s) 213
FblI GTMKAC 1 cut(s) 473
FokI GGATG 4 cut(s) 79, 360, 398, 422
FspBI CTAG 1 cut(s) 71
GsuI CTGGAG 1 cut(s) 225
Hin1II CATG 2 cut(s) 347, 570
HindIII AAGCTT 1 cut(s) 235
HinfI GANTC 3 cut(s) 131, 252, 289
Hpy166II GTNNAC 3 cut(s) 176, 259, 474
Hpy188I TCNGA 1 cut(s) 514
Hpy8I GTNNAC 3 cut(s) 176, 259, 474
Hpy99I CGWCG 1 cut(s) 46
HpyCH4III ACNGT 2 cut(s) 299, 368
HpyCH4V TGCA 1 cut(s) 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpyF3I CTNAG 2 cut(s) 452, 511
Hsp92II CATG 2 cut(s) 347, 570
Kzo9I GATC 1 cut(s) 224
LpnPI CCDG 1 cut(s) 189
LweI GCATC 3 cut(s) 57, 57, 338
MaeI CTAG 1 cut(s) 71
MaeIII GTNAC 1 cut(s) 394
MalI GATC 1 cut(s) 226
MboI GATC 1 cut(s) 224
MboII GAAGA 1 cut(s) 69
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 4 cut(s) 213, 264, 435, 480
MlyI GAGTC 2 cut(s) 125, 246
MmeI TCCRAC 1 cut(s) 525
MnlI CCTC 4 cut(s) 17, 146, 460, 532
MseI TTAA 5 cut(s) 24, 107, 144, 426, 483
MslI CAYNNNNRTG 2 cut(s) 26, 404
MwoI GCNNNNNNNGC 1 cut(s) 173
NdeII GATC 1 cut(s) 224
NlaIII CATG 2 cut(s) 347, 570
NmuCI GTSAC 1 cut(s) 394
PfeI GAWTC 1 cut(s) 289
PleI GAGTC 2 cut(s) 125, 246
PpsI GAGTC 2 cut(s) 125, 246
PshBI ATTAAT 2 cut(s) 24, 144
PspPI GGNCC 2 cut(s) 4, 547
RseI CAYNNNNRTG 2 cut(s) 26, 404
SaqAI TTAA 5 cut(s) 24, 107, 144, 426, 483
Sau3AI GATC 1 cut(s) 224
Sau96I GGNCC 2 cut(s) 4, 547
SchI GAGTC 2 cut(s) 125, 246
SduI GDGCHC 1 cut(s) 178
SetI ASST 8 cut(s) 9, 14, 76, 169, 239, 309, 471, 492
SfaNI GCATC 3 cut(s) 57, 57, 338
SinI GGWCC 2 cut(s) 4, 547
SmiMI CAYNNNNRTG 2 cut(s) 26, 404
Sse9I AATT 4 cut(s) 213, 264, 435, 480
SsiI CCGC 2 cut(s) 220, 550
SspI AATATT 1 cut(s) 322
SspMI CTAG 1 cut(s) 71
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 2 cut(s) 299, 368
TaqI TCGA 3 cut(s) 41, 189, 404
TasI AATT 4 cut(s) 213, 264, 435, 480
TfiI GAWTC 1 cut(s) 289
Tru1I TTAA 5 cut(s) 24, 107, 144, 426, 483
Tru9I TTAA 5 cut(s) 24, 107, 144, 426, 483
TseFI GTSAC 1 cut(s) 394
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 2 cut(s) 10, 235
TspGWI ACGGA 1 cut(s) 276
VneI GTGCAC 1 cut(s) 174
VpaK11BI GGWCC 2 cut(s) 4, 547
VspI ATTAAT 2 cut(s) 24, 144
XapI RAATTY 1 cut(s) 435
XmiI GTMKAC 1 cut(s) 473
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.