Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

16239644 .. 16242980

Gene Structure 3337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G244800.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGAATTTGCAGCTTATTGGCGTTCCTGATCAAGCTGAAAAAGATGAGGTTGTTAAATCAGTGATGGATTTGAAGAGTGCTGAAATTGAAGAAGGTTACACCATGGATGCTGTTGCATCTCGCCAGGGTCTTTTAATGGATGTGAGAGATAAGCTTCTTTTTGAGCCAGAATACACTGGTAATATTAAGGAAAAGATCCCACCTAAATCTTCCCTACGAATCCCTTGGGCTTGGTTGCCAGGTGCTCTTTGCCTCCTTCAAGAGGTTGGAGAAGTTAAGCTTGTGCAAGATATTGGTCATGTAGCTGTTCAGCATCCAGATGCTAAGCCGTATGTTCATGATCTTCTTCTTTCTATGGCACTAGCGGAGTGTGGAACTGCAAAGATTGGTTTTGAGAAGAACAAGGTGTCCCAAGGATTTGAAGCTCTCGCTTGTGCACAGAGCCTTCTAAGGAATAAAAAGTCTTTTGGGAAAATAACATTGTTATCTCAGACAGAAGAATCTTTGGAGGAGCTTGCACCTGCTTGCACATTGGAATTGCTAGGCATGCCTCACTTACCTGAGAATGCTGAAAGAAGAAGAGGAGCAATTGCAGCCTTGCGTGAATTGGTCAGACAGGGGCTTGGTGTGGAAACGTCGTGTCGAGTTCAAGACTGGCCATACTTCTTGAGCCAAGCATTTAATAGACTAATGGCTTTGGAGATAGTTGATCTTCTTCCATGGGATGACTTAGCTATTACAAGGAAGAATAAGAAATCACTTGAATCACAGAATCAAAGGGTTGTTATTGATTTTAATTGTTTCTACATGGTGTTGATAGCTCATATTGCCCTGGGGTTTTCAAGCAAGCAAAAGGAATTGATTGACAAAGCAAAGACTATTTGCGAGTGTCTGATTGCATCAGAGGGTACTGATCTGAAATTTGAGGAAGCTTTTTGCTTGTTCCTTCTTGGTCAGGTATCATTCTTATTGGAAAGACAGGTGGGACTGCAGAAGAGGATGCTGCTGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0019866 GO:0031090 GO:0031967 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00020 ko00640 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00640 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

DUF4101

Protein Analysis

338

Amino Acids

37.77

Weight (kDa)

5.56

Isoelectric Point (pI)

51.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	529
Acc36I	ACCTGC	1 cut(s)	529
AciI	CCGC	1 cut(s)	365
AclWI	GGATC	1 cut(s)	190
AcoI	YGGCCR	1 cut(s)	656
AcsI	RAATTY	2 cut(s)	4, 920
AfaI	GTAC	1 cut(s)	910
AfiI	CCNNNNNNNGG	1 cut(s)	262
AgsI	TTSAA	7 cut(s)	73, 89, 260, 422, 650, 764, 843
AjnI	CCWGG	3 cut(s)	123, 238, 831
AloI	GAACNNNNNNTCC	2 cut(s)	392, 424
Alw21I	GWGCWC	2 cut(s)	247, 439
Alw44I	GTGCAC	1 cut(s)	435
AlwI	GGATC	1 cut(s)	190
AoxI	GGCC	1 cut(s)	656
ApaLI	GTGCAC	1 cut(s)	435
ApeKI	GCWGC	4 cut(s)	10, 593, 1003, 1006
ApoI	RAATTY	2 cut(s)	4, 920
BaeGI	GKGCMC	1 cut(s)	439
BalI	TGGCCA	1 cut(s)	658
Bbv12I	GWGCWC	2 cut(s)	247, 439
BbvI	GCAGC	4 cut(s)	22, 605, 990, 993
BccI	CCATC	1 cut(s)	58
BceAI	ACGGC	1 cut(s)	313
BciT130I	CCWGG	3 cut(s)	125, 240, 833
BclI	TGATCA	1 cut(s)	28
BfaI	CTAG	2 cut(s)	362, 542
BfmI	CTRYAG	1 cut(s)	989
BfuAI	ACCTGC	1 cut(s)	529
BisI	GCNGC	4 cut(s)	11, 594, 1004, 1007
BlpI	GCTNAGC	1 cut(s)	324
BlsI	GCNGC	4 cut(s)	12, 595, 1005, 1008
Bme1390I	CCNGG	3 cut(s)	125, 240, 833
BmrFI	CCNGG	3 cut(s)	125, 240, 833
BmsI	GCATC	6 cut(s)	97, 125, 310, 322, 908, 990
Bpu1102I	GCTNAGC	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	688
BsaJI	CCNNGG	7 cut(s)	102, 124, 224, 412, 719, 831, 832
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse1I	ACTGG	2 cut(s)	181, 659
BseBI	CCWGG	3 cut(s)	125, 240, 833
BseDI	CCNNGG	7 cut(s)	102, 124, 224, 412, 719, 831, 832
BseGI	GGATG	5 cut(s)	112, 145, 313, 730, 1005
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseMII	CTCAG	2 cut(s)	503, 552
BseNI	ACTGG	2 cut(s)	181, 659
BseRI	GAGGAG	2 cut(s)	524, 597
BseSI	GKGCMC	1 cut(s)	439
BseXI	GCAGC	4 cut(s)	22, 605, 990, 993
BshFI	GGCC	1 cut(s)	658
BsiHKAI	GWGCWC	2 cut(s)	247, 439
BslFI	GGGAC	2 cut(s)	394, 999
BslI	CCNNNNNNNGG	1 cut(s)	262
BsmFI	GGGAC	2 cut(s)	394, 999
BsmI	GAATGC	1 cut(s)	571
BsnI	GGCC	1 cut(s)	658
Bsp1286I	GDGCHC	2 cut(s)	247, 439
Bsp143I	GATC	5 cut(s)	28, 195, 340, 709, 913
Bsp1720I	GCTNAGC	1 cut(s)	324
Bsp19I	CCATGG	2 cut(s)	102, 719
BspACI	CCGC	1 cut(s)	365
BspANI	GGCC	1 cut(s)	658
BspCNI	CTCAG	2 cut(s)	502, 553
BspHI	TCATGA	1 cut(s)	337
BspMAI	CTGCAG	1 cut(s)	993
BspMI	ACCTGC	1 cut(s)	529
BspPI	GGATC	1 cut(s)	190
BsrI	ACTGG	2 cut(s)	181, 659
BssECI	CCNNGG	7 cut(s)	102, 124, 224, 412, 719, 831, 832
BssMI	GATC	5 cut(s)	28, 195, 340, 709, 913
BssT1I	CCWWGG	4 cut(s)	102, 224, 412, 719
Bst2UI	CCWGG	3 cut(s)	125, 240, 833
Bst6I	CTCTTC	3 cut(s)	68, 574, 989
BstC8I	GCNNGC	4 cut(s)	516, 526, 548, 848
BstDEI	CTNAG	5 cut(s)	324, 449, 489, 561, 730
BstDSI	CCRYGG	2 cut(s)	102, 719
BstENI	CCTNNNNNAGG	1 cut(s)	260
BstF5I	GGATG	5 cut(s)	112, 145, 313, 730, 1005
BstKTI	GATC	5 cut(s)	31, 198, 343, 712, 916
BstMBI	GATC	5 cut(s)	28, 195, 340, 709, 913
BstMWI	GCNNNNNNNGC	3 cut(s)	547, 593, 827
BstNI	CCWGG	3 cut(s)	125, 240, 833
BstNSI	RCATGY	1 cut(s)	550
BstSCI	CCNGG	3 cut(s)	123, 238, 831
BstSFI	CTRYAG	1 cut(s)	989
BstSLI	GKGCMC	1 cut(s)	439
BstV1I	GCAGC	4 cut(s)	22, 605, 990, 993
BstX2I	RGATCY	1 cut(s)	195
BstYI	RGATCY	1 cut(s)	195
BsuRI	GGCC	1 cut(s)	658
BtgI	CCRYGG	2 cut(s)	102, 719
BtsCI	GGATG	5 cut(s)	112, 145, 313, 730, 1005
BtsIMutI	CAGTG	2 cut(s)	66, 174
BveI	ACCTGC	1 cut(s)	529
Cac8I	GCNNGC	4 cut(s)	516, 526, 548, 848
CciI	TCATGA	1 cut(s)	337
Csp6I	GTAC	1 cut(s)	909
CviAII	CATG	6 cut(s)	103, 299, 338, 547, 720, 808
CviQI	GTAC	1 cut(s)	909
DdeI	CTNAG	5 cut(s)	324, 449, 489, 561, 730
DpnI	GATC	5 cut(s)	30, 197, 342, 711, 915
DpnII	GATC	5 cut(s)	28, 195, 340, 709, 913
EaeI	YGGCCR	1 cut(s)	656
Eam1104I	CTCTTC	3 cut(s)	68, 574, 989
EarI	CTCTTC	3 cut(s)	68, 574, 989
Eco130I	CCWWGG	4 cut(s)	102, 224, 412, 719
EcoNI	CCTNNNNNAGG	1 cut(s)	260
EcoRII	CCWGG	3 cut(s)	123, 238, 831
EcoT14I	CCWWGG	4 cut(s)	102, 224, 412, 719
ErhI	CCWWGG	4 cut(s)	102, 224, 412, 719
FaeI	CATG	6 cut(s)	106, 302, 341, 550, 723, 811
FalI	AAGNNNNNCTT	2 cut(s)	264, 296
FaqI	GGGAC	2 cut(s)	394, 999
FatI	CATG	6 cut(s)	102, 298, 337, 546, 719, 807
FbaI	TGATCA	1 cut(s)	28
Fnu4HI	GCNGC	4 cut(s)	11, 594, 1004, 1007
FokI	GGATG	4 cut(s)	119, 152, 300, 737
Fsp4HI	GCNGC	4 cut(s)	11, 594, 1004, 1007
FspBI	CTAG	2 cut(s)	362, 542
GluI	GCNGC	4 cut(s)	11, 594, 1004, 1007
HaeIII	GGCC	1 cut(s)	658
Hin1II	CATG	6 cut(s)	106, 302, 341, 550, 723, 811
HindIII	AAGCTT	3 cut(s)	152, 278, 930
HinfI	GANTC	4 cut(s)	219, 500, 764, 772
Hpy166II	GTNNAC	1 cut(s)	437
Hpy188I	TCNGA	5 cut(s)	492, 614, 894, 904, 918
Hpy188III	TCNNGA	6 cut(s)	26, 260, 317, 338, 650, 667
Hpy8I	GTNNAC	1 cut(s)	437
Hpy99I	CGWCG	1 cut(s)	640
HpyAV	CCTTC	4 cut(s)	86, 266, 455, 956
HpyCH4IV	ACGT	1 cut(s)	635
HpyF10VI	GCNNNNNNNGC	3 cut(s)	547, 593, 827
HpyF3I	CTNAG	5 cut(s)	324, 449, 489, 561, 730
HpySE526I	ACGT	1 cut(s)	635
Hsp92II	CATG	6 cut(s)	106, 302, 341, 550, 723, 811
Ksp22I	TGATCA	1 cut(s)	28
Kzo9I	GATC	5 cut(s)	28, 195, 340, 709, 913
LmnI	GCTCC	2 cut(s)	511, 584
Lsp1109I	GCAGC	4 cut(s)	22, 605, 990, 993
LweI	GCATC	6 cut(s)	97, 125, 310, 322, 908, 990
MaeI	CTAG	2 cut(s)	362, 542
MaeII	ACGT	1 cut(s)	635
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	5 cut(s)	30, 197, 342, 711, 915
MboI	GATC	5 cut(s)	28, 195, 340, 709, 913
MfeI	CAATTG	1 cut(s)	588
MflI	RGATCY	1 cut(s)	195
MhlI	GDGCHC	2 cut(s)	247, 439
MlsI	TGGCCA	1 cut(s)	658
MluCI	AATT	8 cut(s)	4, 84, 536, 588, 605, 796, 857, 920
MluNI	TGGCCA	1 cut(s)	658
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	9 cut(s)	40, 256, 263, 502, 561, 575, 898, 919, 990
Mox20I	TGGCCA	1 cut(s)	658
MscI	TGGCCA	1 cut(s)	658
MseI	TTAA	6 cut(s)	54, 134, 186, 276, 681, 795
MslI	CAYNNNNRTG	1 cut(s)	318
Msp20I	TGGCCA	1 cut(s)	658
MspR9I	CCNGG	3 cut(s)	125, 240, 833
MunI	CAATTG	1 cut(s)	588
Mva1269I	GAATGC	1 cut(s)	571
MvaI	CCWGG	3 cut(s)	125, 240, 833
MwoI	GCNNNNNNNGC	3 cut(s)	547, 593, 827
NcoI	CCATGG	2 cut(s)	102, 719
NdeII	GATC	5 cut(s)	28, 195, 340, 709, 913
NlaIII	CATG	6 cut(s)	106, 302, 341, 550, 723, 811
NspI	RCATGY	1 cut(s)	550
PaeI	GCATGC	1 cut(s)	550
PagI	TCATGA	1 cut(s)	337
PaqCI	CACCTGC	1 cut(s)	529
PasI	CCCWGGG	1 cut(s)	832
PctI	GAATGC	1 cut(s)	571
PfeI	GAWTC	4 cut(s)	219, 500, 764, 772
PkrI	GCNGC	4 cut(s)	12, 595, 1005, 1008
Psp6I	CCWGG	3 cut(s)	123, 238, 831
PspGI	CCWGG	3 cut(s)	123, 238, 831
PstI	CTGCAG	1 cut(s)	993
PsuI	RGATCY	1 cut(s)	195
RsaI	GTAC	1 cut(s)	910
RsaNI	GTAC	1 cut(s)	909
RseI	CAYNNNNRTG	1 cut(s)	318
SaqAI	TTAA	6 cut(s)	54, 134, 186, 276, 681, 795
SatI	GCNGC	4 cut(s)	11, 594, 1004, 1007
Sau3AI	GATC	5 cut(s)	28, 195, 340, 709, 913
ScrFI	CCNGG	3 cut(s)	125, 240, 833
SduI	GDGCHC	2 cut(s)	247, 439
SfaNI	GCATC	6 cut(s)	97, 125, 310, 322, 908, 990
SfcI	CTRYAG	1 cut(s)	989
SmiMI	CAYNNNNRTG	1 cut(s)	318
SmlI	CTYRAG	1 cut(s)	667
SmoI	CTYRAG	1 cut(s)	667
SphI	GCATGC	1 cut(s)	550
Sse9I	AATT	8 cut(s)	4, 84, 536, 588, 605, 796, 857, 920
SsiI	CCGC	1 cut(s)	365
SspI	AATATT	1 cut(s)	184
SspMI	CTAG	2 cut(s)	362, 542
StyD4I	CCNGG	3 cut(s)	123, 238, 831
StyI	CCWWGG	4 cut(s)	102, 224, 412, 719
TaiI	ACGT	1 cut(s)	638
TaqI	TCGA	1 cut(s)	643
TasI	AATT	8 cut(s)	4, 84, 536, 588, 605, 796, 857, 920
TfiI	GAWTC	4 cut(s)	219, 500, 764, 772
Tru1I	TTAA	6 cut(s)	54, 134, 186, 276, 681, 795
Tru9I	TTAA	6 cut(s)	54, 134, 186, 276, 681, 795
TscAI	CASTG	2 cut(s)	66, 181
TseI	GCWGC	4 cut(s)	10, 593, 1003, 1006
TspDTI	ATGAA	2 cut(s)	17, 326
TspRI	CASTG	2 cut(s)	66, 181
VneI	GTGCAC	1 cut(s)	435
XagI	CCTNNNNNAGG	1 cut(s)	260
XapI	RAATTY	2 cut(s)	4, 920
XceI	RCATGY	1 cut(s)	550
XspI	CTAG	2 cut(s)	362, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.