Prupe.4G247000_v2.0.a1

KH-domain-like of EngA bacterial GTPase enzymes, C-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Reverse (-)
16385942 .. 16387224
1283 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G247000.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 432 bp
ATGTTGGCCGTGGGCTACATTAATGGTATTATTGTCTTTGGTTTTAGGATTATCATTGCTGCTAGCACAGTTGAGAAAGAAAGATCAAGAAGGCTTAGTACTTCTGTAGTAAATCAAGTTGTACAGGAGGCACTAGCTTTTAAATCACCACCAAGGACACGAGGTGGCAAAAGAGGGCGCATTTATTACTGCACTCAGGCAGCCATAAGGCCACCAACATTTGTGTTCTTTGTCAATGATGCAAAACTTTTCCCAGAGACGTACCGCCGTTATATGGAGAAGCAACTGCGATCAGATGCTGGGTTTCTGGGAACTCCAATTCGGCTTCTTTGGTCTAACAGGAGGAAAACAGAGAAAGAGGAAGGCAGAGCTGCAACGAGGACACAAGCAAATCTTGTGCCACGTGACAGAAAATTGGAGTTAGCTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_dom-like MMR_HSR1

Protein Analysis

144

Amino Acids

16.37

Weight (kDa)

10.91

Isoelectric Point (pI)

46.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 265
AcoI YGGCCR 1 cut(s) 6
AcvI CACGTG 1 cut(s) 404
AdeI CACNNNGTG 1 cut(s) 164
AfaI GTAC 3 cut(s) 100, 123, 263
AfiI CCNNNNNNNGG 1 cut(s) 274
AluBI AGCT 3 cut(s) 137, 371, 425
AluI AGCT 3 cut(s) 137, 371, 425
Alw26I GTCTC 1 cut(s) 251
AlwNI CAGNNNCTG 1 cut(s) 299
AoxI GGCC 2 cut(s) 6, 209
ApeKI GCWGC 3 cut(s) 59, 200, 371
AseI ATTAAT 1 cut(s) 21
AspLEI GCGC 1 cut(s) 180
AsuHPI GGTGA 1 cut(s) 138
AsuNHI GCTAGC 1 cut(s) 62
BarI GAAGNNNNNNTAC 2 cut(s) 82, 114
BauI CACGAG 1 cut(s) 159
BbrPI CACGTG 1 cut(s) 404
BbvI GCAGC 3 cut(s) 46, 212, 358
BceAI ACGGC 1 cut(s) 252
BcoDI GTCTC 1 cut(s) 251
BfaI CTAG 2 cut(s) 63, 134
BfmI CTRYAG 1 cut(s) 105
BisI GCNGC 3 cut(s) 60, 201, 372
BlsI GCNGC 3 cut(s) 61, 202, 373
BmcAI AGTACT 1 cut(s) 100
BmsI GCATC 2 cut(s) 229, 286
BmtI GCTAGC 1 cut(s) 66
BsaAI YACGTR 1 cut(s) 404
BsaJI CCNNGG 2 cut(s) 9, 152
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse3DI GCAATG 1 cut(s) 54
BseDI CCNNGG 2 cut(s) 9, 152
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMI GCAATG 1 cut(s) 54
BseMII CTCAG 1 cut(s) 209
BseXI GCAGC 3 cut(s) 46, 212, 358
BseYI CCCAGC 1 cut(s) 299
BsgI GTGCAG 1 cut(s) 175
BshFI GGCC 2 cut(s) 8, 211
BslI CCNNNNNNNGG 1 cut(s) 274
BsmAI GTCTC 1 cut(s) 251
BsmBI CGTCTC 1 cut(s) 251
BsnI GGCC 2 cut(s) 8, 211
Bsp1407I TGTACA 1 cut(s) 121
Bsp143I GATC 2 cut(s) 83, 290
BspACI CCGC 1 cut(s) 265
BspANI GGCC 2 cut(s) 8, 211
BspCNI CTCAG 1 cut(s) 208
BspOI GCTAGC 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 54
BsrGI TGTACA 1 cut(s) 121
BssECI CCNNGG 2 cut(s) 9, 152
BssMI GATC 2 cut(s) 83, 290
BssSI CACGAG 1 cut(s) 159
BssT1I CCWWGG 1 cut(s) 152
Bst2BI CACGAG 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 70
BstAUI TGTACA 1 cut(s) 121
BstBAI YACGTR 1 cut(s) 404
BstC8I GCNNGC 1 cut(s) 64
BstDEI CTNAG 2 cut(s) 95, 195
BstDSI CCRYGG 1 cut(s) 9
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 2 cut(s) 86, 293
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 2 cut(s) 83, 290
BstSFI CTRYAG 1 cut(s) 105
BstV1I GCAGC 3 cut(s) 46, 212, 358
BsuRI GGCC 2 cut(s) 8, 211
BtgI CCRYGG 1 cut(s) 9
Cac8I GCNNGC 1 cut(s) 64
CaiI CAGNNNCTG 1 cut(s) 299
CfoI GCGC 1 cut(s) 180
Csp6I GTAC 3 cut(s) 99, 122, 262
CviAII CATG 1 cut(s) 429
CviJI RGCY 9 cut(s) 8, 15, 94, 137, 203, 211, 325, 371, 425
CviKI_1 RGCY 9 cut(s) 8, 15, 94, 137, 203, 211, 325, 371, 425
CviQI GTAC 3 cut(s) 99, 122, 262
DdeI CTNAG 2 cut(s) 95, 195
DpnI GATC 2 cut(s) 85, 292
DpnII GATC 2 cut(s) 83, 290
DraI TTTAAA 1 cut(s) 142
DraIII CACNNNGTG 1 cut(s) 164
EaeI YGGCCR 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 152
Eco72I CACGTG 1 cut(s) 404
EcoT14I CCWWGG 1 cut(s) 152
ErhI CCWWGG 1 cut(s) 152
Esp3I CGTCTC 1 cut(s) 251
FaeI CATG 1 cut(s) 432
FaiI YATR 4 cut(s) 206, 273, 275, 430
FalI AAGNNNNNCTT 2 cut(s) 378, 410
FatI CATG 1 cut(s) 428
Fnu4HI GCNGC 3 cut(s) 60, 201, 372
Fsp4HI GCNGC 3 cut(s) 60, 201, 372
FspBI CTAG 2 cut(s) 63, 134
GlaI GCGC 1 cut(s) 179
GluI GCNGC 3 cut(s) 60, 201, 372
GsaI CCCAGC 1 cut(s) 303
HaeIII GGCC 2 cut(s) 8, 211
HhaI GCGC 1 cut(s) 180
Hin1II CATG 1 cut(s) 432
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HphI GGTGA 1 cut(s) 138
Hpy188I TCNGA 1 cut(s) 295
Hpy188III TCNNGA 1 cut(s) 87
HpyAV CCTTC 2 cut(s) 84, 356
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4IV ACGT 2 cut(s) 260, 403
HpyCH4V TGCA 3 cut(s) 192, 242, 374
HpyF3I CTNAG 2 cut(s) 95, 195
HpySE526I ACGT 2 cut(s) 260, 403
Hsp92II CATG 1 cut(s) 432
HspAI GCGC 1 cut(s) 178
Kzo9I GATC 2 cut(s) 83, 290
LpnPI CCDG 6 cut(s) 110, 182, 267, 285, 293, 325
Lsp1109I GCAGC 3 cut(s) 46, 212, 358
LweI GCATC 2 cut(s) 229, 286
MaeI CTAG 2 cut(s) 63, 134
MaeII ACGT 2 cut(s) 260, 403
MaeIII GTNAC 1 cut(s) 404
MalI GATC 2 cut(s) 85, 292
MboI GATC 2 cut(s) 83, 290
MluCI AATT 2 cut(s) 318, 413
MnlI CCTC 6 cut(s) 121, 155, 167, 336, 352, 372
MseI TTAA 2 cut(s) 21, 141
NdeII GATC 2 cut(s) 83, 290
NheI GCTAGC 1 cut(s) 62
NlaIII CATG 1 cut(s) 432
NmuCI GTSAC 1 cut(s) 404
PkrI GCNGC 3 cut(s) 61, 202, 373
PmaCI CACGTG 1 cut(s) 404
PmlI CACGTG 1 cut(s) 404
Ppu21I YACGTR 1 cut(s) 404
PshBI ATTAAT 1 cut(s) 21
PspCI CACGTG 1 cut(s) 404
PspFI CCCAGC 1 cut(s) 299
PstNI CAGNNNCTG 1 cut(s) 299
RsaI GTAC 3 cut(s) 100, 123, 263
RsaNI GTAC 3 cut(s) 99, 122, 262
SaqAI TTAA 2 cut(s) 21, 141
SatI GCNGC 3 cut(s) 60, 201, 372
Sau3AI GATC 2 cut(s) 83, 290
ScaI AGTACT 1 cut(s) 100
SetI ASST 6 cut(s) 139, 166, 263, 373, 406, 427
SfaNI GCATC 2 cut(s) 229, 286
SfcI CTRYAG 1 cut(s) 105
Sse9I AATT 2 cut(s) 318, 413
SsiI CCGC 1 cut(s) 265
SspMI CTAG 2 cut(s) 63, 134
StyI CCWWGG 1 cut(s) 152
TaaI ACNGT 1 cut(s) 70
TaiI ACGT 2 cut(s) 263, 406
TasI AATT 2 cut(s) 318, 413
TatI WGTACW 2 cut(s) 98, 121
Tru1I TTAA 2 cut(s) 21, 141
Tru9I TTAA 2 cut(s) 21, 141
TseFI GTSAC 1 cut(s) 404
TseI GCWGC 3 cut(s) 59, 200, 371
Tsp45I GTSAC 1 cut(s) 404
VspI ATTAAT 1 cut(s) 21
XspI CTAG 2 cut(s) 63, 134
ZrmI AGTACT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.