Prupe.4G247700_v2.0.a1

Cell division cycle

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Forward (+)
16482037 .. 16483592
1556 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G247700.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 351 bp
ATGAGTTCTTCGTCTATCTTGAAGTCAGAGTCTAGGTGCCCTCTTCGCGAACAGTTTCTTCAAAAAATGATTTCTAGGGAAAATCTGGACAGGTTCATCCCCAACAAATCAGCGACGGATTTTGATTTCGCGGACTTCATGCTGACTGAAGGTAGGAAAGATCCAAAGCCAAATGTTAAGCCAAGAATAGGCCGGTGGTGTCGTCTTTCTGGATGGCGCTTGTGCCTACTTTGGTTGAACTTGAGGGAACTAGTGTGGATCTTGACGTTGGTGGCAAAGGAGGTTGATGGGAGCTGTGCGGTGGTTGTCGTTGTTCCCATCACCCAAGTTTGGTTTTTCCAAATAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 ko04114 ko04120 ko05166 ko05203 map04110 map04111 map04113 map04114 map04120 map05166 map05203
Pfam Domains
Protein Families
ANAPC4_WD40 WD40

Protein Analysis

117

Amino Acids

13.52

Weight (kDa)

9.34

Isoelectric Point (pI)

50.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 36
AccII CGCG 2 cut(s) 48, 131
AciI CCGC 2 cut(s) 131, 299
AclWI GGATC 2 cut(s) 155, 266
AcuI CTGAAG 1 cut(s) 168
AfiI CCNNNNNNNGG 2 cut(s) 188, 330
AgsI TTSAA 3 cut(s) 22, 62, 238
AhlI ACTAGT 1 cut(s) 250
AluBI AGCT 1 cut(s) 294
AluI AGCT 1 cut(s) 294
AlwI GGATC 2 cut(s) 155, 266
AoxI GGCC 1 cut(s) 190
Asp700I GAANNNNTTC 1 cut(s) 54
AspLEI GCGC 1 cut(s) 219
AsuHPI GGTGA 1 cut(s) 313
BaeGI GKGCMC 1 cut(s) 41
BanI GGYRCC 1 cut(s) 36
BccI CCATC 3 cut(s) 207, 281, 326
BcuI ACTAGT 1 cut(s) 250
BfaI CTAG 3 cut(s) 33, 75, 251
BfoI RGCGCY 1 cut(s) 220
BmiI GGNNCC 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 262
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 330
Bse118I RCCGGY 1 cut(s) 192
BseGI GGATG 2 cut(s) 96, 218
BseLI CCNNNNNNNGG 2 cut(s) 188, 330
BseSI GKGCMC 1 cut(s) 41
Bsh1236I CGCG 2 cut(s) 48, 131
BshFI GGCC 1 cut(s) 192
BshNI GGYRCC 1 cut(s) 36
BsiSI CCGG 1 cut(s) 193
BslI CCNNNNNNNGG 2 cut(s) 188, 330
BsnI GGCC 1 cut(s) 192
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 2 cut(s) 160, 258
Bsp68I TCGCGA 1 cut(s) 48
BspACI CCGC 2 cut(s) 131, 299
BspANI GGCC 1 cut(s) 192
BspFNI CGCG 2 cut(s) 48, 131
BspLI GGNNCC 1 cut(s) 38
BspPI GGATC 2 cut(s) 155, 266
BspT107I GGYRCC 1 cut(s) 36
BsrFI RCCGGY 1 cut(s) 192
BssAI RCCGGY 1 cut(s) 192
BssMI GATC 2 cut(s) 160, 258
Bst4CI ACNGT 1 cut(s) 54
Bst6I CTCTTC 1 cut(s) 48
BstF5I GGATG 2 cut(s) 96, 218
BstFNI CGCG 2 cut(s) 48, 131
BstH2I RGCGCY 1 cut(s) 220
BstHHI GCGC 1 cut(s) 219
BstKTI GATC 2 cut(s) 163, 261
BstMBI GATC 2 cut(s) 160, 258
BstMWI GCNNNNNNNGC 1 cut(s) 45
BstSLI GKGCMC 1 cut(s) 41
BstUI CGCG 2 cut(s) 48, 131
BstX2I RGATCY 2 cut(s) 160, 258
BstYI RGATCY 2 cut(s) 160, 258
BsuRI GGCC 1 cut(s) 192
BtsCI GGATG 2 cut(s) 96, 218
BtuMI TCGCGA 1 cut(s) 48
CfoI GCGC 1 cut(s) 219
Cfr10I RCCGGY 1 cut(s) 192
CviAII CATG 1 cut(s) 139
CviJI RGCY 4 cut(s) 169, 181, 192, 294
CviKI_1 RGCY 4 cut(s) 169, 181, 192, 294
DpnI GATC 2 cut(s) 162, 260
DpnII GATC 2 cut(s) 160, 258
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
Eco57I CTGAAG 1 cut(s) 168
FaeI CATG 1 cut(s) 142
FaiI YATR 1 cut(s) 140
FatI CATG 1 cut(s) 138
FokI GGATG 2 cut(s) 83, 225
FspBI CTAG 3 cut(s) 33, 75, 251
GlaI GCGC 1 cut(s) 218
HaeII RGCGCY 1 cut(s) 220
HaeIII GGCC 1 cut(s) 192
HapII CCGG 1 cut(s) 193
HhaI GCGC 1 cut(s) 219
Hin1II CATG 1 cut(s) 142
Hin6I GCGC 1 cut(s) 217
HinP1I GCGC 1 cut(s) 217
HinfI GANTC 1 cut(s) 29
HpaII CCGG 1 cut(s) 193
HphI GGTGA 1 cut(s) 313
Hpy188I TCNGA 2 cut(s) 28, 350
Hpy188III TCNNGA 5 cut(s) 19, 47, 86, 210, 262
Hpy99I CGWCG 1 cut(s) 118
HpyAV CCTTC 1 cut(s) 143
HpyCH4III ACNGT 1 cut(s) 54
HpyCH4IV ACGT 1 cut(s) 266
HpyF10VI GCNNNNNNNGC 1 cut(s) 45
HpySE526I ACGT 1 cut(s) 266
Hsp92II CATG 1 cut(s) 142
HspAI GCGC 1 cut(s) 217
Kzo9I GATC 2 cut(s) 160, 258
LmnI GCTCC 1 cut(s) 291
LpnPI CCDG 4 cut(s) 71, 76, 195, 206
MaeI CTAG 3 cut(s) 33, 75, 251
MaeII ACGT 1 cut(s) 266
MalI GATC 2 cut(s) 162, 260
MboI GATC 2 cut(s) 160, 258
MboII GAAGA 2 cut(s) 35, 50
MflI RGATCY 2 cut(s) 160, 258
MhlI GDGCHC 1 cut(s) 41
MlyI GAGTC 1 cut(s) 38
MnlI CCTC 3 cut(s) 51, 237, 274
MroXI GAANNNNTTC 1 cut(s) 54
MseI TTAA 1 cut(s) 177
MspI CCGG 1 cut(s) 193
MvnI CGCG 2 cut(s) 48, 131
MwoI GCNNNNNNNGC 1 cut(s) 45
NdeII GATC 2 cut(s) 160, 258
NlaIII CATG 1 cut(s) 142
NlaIV GGNNCC 1 cut(s) 38
NruI TCGCGA 1 cut(s) 48
PdmI GAANNNNTTC 1 cut(s) 54
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 38
PsuI RGATCY 2 cut(s) 160, 258
RruI TCGCGA 1 cut(s) 48
SaqAI TTAA 1 cut(s) 177
Sau3AI GATC 2 cut(s) 160, 258
SchI GAGTC 1 cut(s) 38
SduI GDGCHC 1 cut(s) 41
SetI ASST 6 cut(s) 38, 95, 154, 269, 285, 296
SmlI CTYRAG 1 cut(s) 241
SmoI CTYRAG 1 cut(s) 241
SpeI ACTAGT 1 cut(s) 250
SsiI CCGC 2 cut(s) 131, 299
SspMI CTAG 3 cut(s) 33, 75, 251
TaaI ACNGT 1 cut(s) 54
TaiI ACGT 1 cut(s) 269
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TspDTI ATGAA 2 cut(s) 85, 127
TspGWI ACGGA 1 cut(s) 131
XmnI GAANNNNTTC 1 cut(s) 54
XspI CTAG 3 cut(s) 33, 75, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.