Prupe.4G247900_v2.0.a1

Belongs to the adaptor complexes medium subunit family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Reverse (-)
16503389 .. 16504286
898 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G247900.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 420 bp
ATGATTCCTCCACCAAATATAGTTAACAAGATGTTGAGTGTTGTGACAGGCAACAGTTCCAACATGAGTGACACACTTCCAGGTGCAACATCATCTTGCATTCCATGGAGAACAACATACCTGAAATATGCTAACAATGAAGTTTATGTTGATCTTGTTGAAGAAATGGATGCAATTGTAAACAGGGATGGGGTCCTGGTGAAATGCAAGATATATGGTGAAGTGCAAGTGAACTCCCATCTCTCAGATGTTCCTGATTTGACTCTTTCATTTGCAAACCCTTCTATTCTTGATAATGTAAGATTCCATCCATGTGTTCGATTTTTTCCTTGGGAATCCCAACAAATTCTGTCATTTGTGCCTCCTGACGGACAGTTTAAACTGAGGAGCTACAAGTGTGTGGTGTTAAAGGGACACTAG

Protein Analysis

140

Amino Acids

15.6

Weight (kDa)

6.26

Isoelectric Point (pI)

35.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 345
AfiI CCNNNNNNNGG 1 cut(s) 368
AgsI TTSAA 1 cut(s) 161
AjnI CCWGG 2 cut(s) 79, 195
AluBI AGCT 1 cut(s) 390
AluI AGCT 1 cut(s) 390
ApoI RAATTY 1 cut(s) 345
AspS9I GGNCC 1 cut(s) 193
AsuHPI GGTGA 2 cut(s) 211, 230
AvaII GGWCC 1 cut(s) 193
BccI CCATC 3 cut(s) 182, 246, 315
BciT130I CCWGG 2 cut(s) 81, 197
BfaI CTAG 1 cut(s) 418
Bme1390I CCNGG 2 cut(s) 81, 197
Bme18I GGWCC 1 cut(s) 193
BmgT120I GGNCC 1 cut(s) 193
BmiI GGNNCC 1 cut(s) 194
BmrFI CCNGG 2 cut(s) 81, 197
BmsI GCATC 1 cut(s) 160
BsaJI CCNNGG 2 cut(s) 104, 329
Bsc4I CCNNNNNNNGG 1 cut(s) 368
BseBI CCWGG 2 cut(s) 81, 197
BseDI CCNNGG 2 cut(s) 104, 329
BseGI GGATG 3 cut(s) 175, 193, 307
BseLI CCNNNNNNNGG 1 cut(s) 368
BseMII CTCAG 2 cut(s) 258, 374
BseRI GAGGAG 1 cut(s) 400
BslI CCNNNNNNNGG 1 cut(s) 368
BsmI GAATGC 1 cut(s) 99
Bsp143I GATC 1 cut(s) 151
Bsp19I CCATGG 1 cut(s) 104
BspCNI CTCAG 2 cut(s) 257, 375
BspLI GGNNCC 1 cut(s) 194
BssECI CCNNGG 2 cut(s) 104, 329
BssMI GATC 1 cut(s) 151
BssT1I CCWWGG 2 cut(s) 104, 329
Bst2UI CCWGG 2 cut(s) 81, 197
Bst4CI ACNGT 2 cut(s) 56, 375
BstDEI CTNAG 2 cut(s) 244, 383
BstDSI CCRYGG 1 cut(s) 104
BstF5I GGATG 3 cut(s) 175, 193, 307
BstKTI GATC 1 cut(s) 154
BstMBI GATC 1 cut(s) 151
BstNI CCWGG 2 cut(s) 81, 197
BstSCI CCNGG 2 cut(s) 79, 195
BtgI CCRYGG 1 cut(s) 104
BtsCI GGATG 3 cut(s) 175, 193, 307
Cfr13I GGNCC 1 cut(s) 193
CviAII CATG 3 cut(s) 64, 105, 312
CviJI RGCY 1 cut(s) 390
CviKI_1 RGCY 1 cut(s) 390
DdeI CTNAG 2 cut(s) 244, 383
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
DraI TTTAAA 1 cut(s) 379
Eco130I CCWWGG 2 cut(s) 104, 329
Eco47I GGWCC 1 cut(s) 193
EcoO109I RGGNCCY 1 cut(s) 193
EcoRII CCWGG 2 cut(s) 79, 195
EcoT14I CCWWGG 2 cut(s) 104, 329
ErhI CCWWGG 2 cut(s) 104, 329
FaeI CATG 3 cut(s) 67, 108, 315
FaiI YATR 9 cut(s) 20, 65, 106, 118, 129, 147, 214, 216, 313
FatI CATG 3 cut(s) 63, 104, 311
FokI GGATG 3 cut(s) 182, 200, 294
FspBI CTAG 1 cut(s) 418
Hin1II CATG 3 cut(s) 67, 108, 315
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 4 cut(s) 4, 262, 303, 335
HpaI GTTAAC 1 cut(s) 25
HphI GGTGA 2 cut(s) 211, 230
Hpy166II GTNNAC 3 cut(s) 25, 181, 232
Hpy188I TCNGA 1 cut(s) 247
Hpy188III TCNNGA 3 cut(s) 254, 290, 365
Hpy8I GTNNAC 3 cut(s) 25, 181, 232
HpyAV CCTTC 1 cut(s) 291
HpyCH4III ACNGT 2 cut(s) 56, 375
HpyCH4V TGCA 6 cut(s) 86, 99, 173, 207, 226, 275
HpyF3I CTNAG 2 cut(s) 244, 383
Hsp92II CATG 3 cut(s) 67, 108, 315
KspAI GTTAAC 1 cut(s) 25
Kzo9I GATC 1 cut(s) 151
LmnI GCTCC 1 cut(s) 387
LpnPI CCDG 9 cut(s) 33, 66, 93, 134, 169, 182, 209, 267, 378
LweI GCATC 1 cut(s) 160
MaeI CTAG 1 cut(s) 418
MaeIII GTNAC 2 cut(s) 43, 68
MalI GATC 1 cut(s) 153
MboI GATC 1 cut(s) 151
MboII GAAGA 1 cut(s) 173
MfeI CAATTG 1 cut(s) 174
MluCI AATT 2 cut(s) 174, 345
MlyI GAGTC 1 cut(s) 256
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 3 cut(s) 18, 372, 378
MseI TTAA 3 cut(s) 24, 378, 407
MslI CAYNNNNRTG 1 cut(s) 312
MspR9I CCNGG 2 cut(s) 81, 197
MssI GTTTAAAC 1 cut(s) 379
MunI CAATTG 1 cut(s) 174
Mva1269I GAATGC 1 cut(s) 99
MvaI CCWGG 2 cut(s) 81, 197
NcoI CCATGG 1 cut(s) 104
NdeII GATC 1 cut(s) 151
NlaIII CATG 3 cut(s) 67, 108, 315
NlaIV GGNNCC 1 cut(s) 194
NmuCI GTSAC 2 cut(s) 43, 68
PctI GAATGC 1 cut(s) 99
PfeI GAWTC 3 cut(s) 4, 303, 335
PleI GAGTC 1 cut(s) 256
PmeI GTTTAAAC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 256
PpuMI RGGWCCY 1 cut(s) 193
Psp5II RGGWCCY 1 cut(s) 193
Psp6I CCWGG 2 cut(s) 79, 195
PspGI CCWGG 2 cut(s) 79, 195
PspN4I GGNNCC 1 cut(s) 194
PspPI GGNCC 1 cut(s) 193
PspPPI RGGWCCY 1 cut(s) 193
RseI CAYNNNNRTG 1 cut(s) 312
SaqAI TTAA 3 cut(s) 24, 378, 407
Sau3AI GATC 1 cut(s) 151
Sau96I GGNCC 1 cut(s) 193
SchI GAGTC 1 cut(s) 256
ScrFI CCNGG 2 cut(s) 81, 197
SetI ASST 3 cut(s) 85, 123, 392
SfaNI GCATC 1 cut(s) 160
SinI GGWCC 1 cut(s) 193
SmiMI CAYNNNNRTG 1 cut(s) 312
Sse9I AATT 2 cut(s) 174, 345
SspMI CTAG 1 cut(s) 418
StyD4I CCNGG 2 cut(s) 79, 195
StyI CCWWGG 2 cut(s) 104, 329
TaaI ACNGT 2 cut(s) 56, 375
TaqI TCGA 1 cut(s) 319
TasI AATT 2 cut(s) 174, 345
TfiI GAWTC 3 cut(s) 4, 303, 335
Tru1I TTAA 3 cut(s) 24, 378, 407
Tru9I TTAA 3 cut(s) 24, 378, 407
TseFI GTSAC 2 cut(s) 43, 68
Tsp45I GTSAC 2 cut(s) 43, 68
TspDTI ATGAA 2 cut(s) 153, 258
TspGWI ACGGA 1 cut(s) 384
VpaK11BI GGWCC 1 cut(s) 193
XapI RAATTY 1 cut(s) 345
XspI CTAG 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.