Prupe.4G248500_v2.0.a1

Retrotransposon gag protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Forward (+)
16596688 .. 16598550
1863 bp
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UTR
Exon/CDS
Intron
Prupe.4G248500.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 492 bp
ATGGTACAAGAATTAGAGAAGTATTTAAAGTTGTCCAATGTAGTTAAGCAAACTGATTATCAAAGATCAGATTTTCATGTTGGCACATCTGTGGCTACAACTTCTACGACTCCAACATCTACGACTAATTTAGTAAAAAGTGCCAAGGGGAAAGGAGTGCTAGTTGATACACATGGTGGTGGAACGCAAAGATGTTACAGATGCCAAGGTTTCGGACACTTTGCTGTCCATTGCCAAACGAAAGGGGCAACAAGAAATCTGTGTGCACACATCAACGAACAAGCTGATAATCAACGCGAATTCAAGGAAGATATCTATGGACCCCAACAACCTGATGCAGATTGTGGAATCGACTTTGAAGTCCCTCATCCAACATTAGCAGTAGTAAGGTGTGCTTTGGCTCAACCTAGGAAGGAAGCTGAGGATTGCAAGCGCACAATCCACACAAGTAATATAGAGATAAGTGAAGTGCCGTTCCCACGAAGACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

164

Amino Acids

18.12

Weight (kDa)

7.63

Isoelectric Point (pI)

28.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 359
AccII CGCG 1 cut(s) 297
AcsI RAATTY 1 cut(s) 299
AdeI CACNNNGTG 1 cut(s) 176
AfaI GTAC 1 cut(s) 6
AgsI TTSAA 2 cut(s) 304, 359
AleI CACNNNNGTG 1 cut(s) 89
AluBI AGCT 2 cut(s) 284, 419
AluI AGCT 2 cut(s) 284, 419
Alw21I GWGCWC 1 cut(s) 268
Alw44I GTGCAC 1 cut(s) 264
ApaLI GTGCAC 1 cut(s) 264
ApoI RAATTY 1 cut(s) 299
AspA2I CCTAGG 1 cut(s) 407
AspLEI GCGC 1 cut(s) 435
AspS9I GGNCC 1 cut(s) 320
AvaII GGWCC 1 cut(s) 320
AvrII CCTAGG 1 cut(s) 407
BaeGI GKGCMC 1 cut(s) 268
Bbv12I GWGCWC 1 cut(s) 268
BbvCI CCTCAGC 1 cut(s) 420
BceAI ACGGC 1 cut(s) 457
BfaI CTAG 2 cut(s) 161, 408
BlnI CCTAGG 1 cut(s) 407
Bme18I GGWCC 1 cut(s) 320
BmgT120I GGNCC 1 cut(s) 320
BmiI GGNNCC 1 cut(s) 322
BmsI GCATC 2 cut(s) 191, 325
Bpu10I CCTNAGC 1 cut(s) 420
BsaJI CCNNGG 3 cut(s) 144, 205, 407
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bse3DI GCAATG 1 cut(s) 229
BseDI CCNNGG 3 cut(s) 144, 205, 407
BseGI GGATG 1 cut(s) 367
BseMI GCAATG 1 cut(s) 229
BseMII CTCAG 1 cut(s) 411
BseSI GKGCMC 1 cut(s) 268
Bsh1236I CGCG 1 cut(s) 297
BsiHKAI GWGCWC 1 cut(s) 268
BslFI GGGAC 1 cut(s) 347
BsmFI GGGAC 1 cut(s) 347
Bsp1286I GDGCHC 1 cut(s) 268
Bsp143I GATC 1 cut(s) 65
BspCNI CTCAG 1 cut(s) 412
BspFNI CGCG 1 cut(s) 297
BspLI GGNNCC 1 cut(s) 322
BsrDI GCAATG 1 cut(s) 229
BssECI CCNNGG 3 cut(s) 144, 205, 407
BssMI GATC 1 cut(s) 65
BssT1I CCWWGG 3 cut(s) 144, 205, 407
Bst4CI ACNGT 1 cut(s) 489
BstC8I GCNNGC 1 cut(s) 431
BstDEI CTNAG 1 cut(s) 420
BstF5I GGATG 1 cut(s) 367
BstFNI CGCG 1 cut(s) 297
BstHHI GCGC 1 cut(s) 435
BstKTI GATC 1 cut(s) 68
BstMBI GATC 1 cut(s) 65
BstSLI GKGCMC 1 cut(s) 268
BstUI CGCG 1 cut(s) 297
BtsCI GGATG 1 cut(s) 367
Cac8I GCNNGC 1 cut(s) 431
CfoI GCGC 1 cut(s) 435
Cfr13I GGNCC 1 cut(s) 320
Csp6I GTAC 1 cut(s) 5
CviAII CATG 2 cut(s) 77, 173
CviJI RGCY 4 cut(s) 95, 284, 401, 419
CviKI_1 RGCY 4 cut(s) 95, 284, 401, 419
CviQI GTAC 1 cut(s) 5
DdeI CTNAG 1 cut(s) 420
DpnI GATC 1 cut(s) 67
DpnII GATC 1 cut(s) 65
DraI TTTAAA 1 cut(s) 27
DraIII CACNNNGTG 1 cut(s) 176
DrdI GACNNNNNNGTC 1 cut(s) 359
DseDI GACNNNNNNGTC 1 cut(s) 359
Eco130I CCWWGG 3 cut(s) 144, 205, 407
Eco32I GATATC 1 cut(s) 313
Eco47I GGWCC 1 cut(s) 320
EcoRI GAATTC 1 cut(s) 299
EcoRV GATATC 1 cut(s) 313
EcoT14I CCWWGG 3 cut(s) 144, 205, 407
ErhI CCWWGG 3 cut(s) 144, 205, 407
FaeI CATG 2 cut(s) 80, 176
FaiI YATR 4 cut(s) 78, 174, 318, 455
FalI AAGNNNNNCTT 2 cut(s) 379, 411
FaqI GGGAC 1 cut(s) 347
FatI CATG 2 cut(s) 76, 172
FokI GGATG 1 cut(s) 354
FspBI CTAG 2 cut(s) 161, 408
GlaI GCGC 1 cut(s) 434
HhaI GCGC 1 cut(s) 435
Hin1II CATG 2 cut(s) 80, 176
Hin6I GCGC 1 cut(s) 433
HinP1I GCGC 1 cut(s) 433
HinfI GANTC 2 cut(s) 109, 348
Hpy166II GTNNAC 1 cut(s) 266
Hpy188I TCNGA 2 cut(s) 70, 215
Hpy8I GTNNAC 1 cut(s) 266
HpyAV CCTTC 1 cut(s) 406
HpyCH4III ACNGT 1 cut(s) 489
HpyCH4V TGCA 3 cut(s) 266, 338, 429
HpyF3I CTNAG 1 cut(s) 420
Hsp92II CATG 2 cut(s) 80, 176
HspAI GCGC 1 cut(s) 433
Kzo9I GATC 1 cut(s) 65
LpnPI CCDG 1 cut(s) 345
LweI GCATC 2 cut(s) 191, 325
MaeI CTAG 2 cut(s) 161, 408
MaeIII GTNAC 1 cut(s) 194
MalI GATC 1 cut(s) 67
MboI GATC 1 cut(s) 65
MboII GAAGA 1 cut(s) 320
MhlI GDGCHC 1 cut(s) 268
MluCI AATT 3 cut(s) 11, 127, 299
MlyI GAGTC 1 cut(s) 103
MmeI TCCRAC 2 cut(s) 137, 395
MnlI CCTC 2 cut(s) 375, 415
MseI TTAA 2 cut(s) 26, 45
MslI CAYNNNNRTG 2 cut(s) 89, 177
MvnI CGCG 1 cut(s) 297
NdeII GATC 1 cut(s) 65
NlaIII CATG 2 cut(s) 80, 176
NlaIV GGNNCC 1 cut(s) 322
OliI CACNNNNGTG 1 cut(s) 89
PfeI GAWTC 1 cut(s) 348
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 322
PspPI GGNCC 1 cut(s) 320
RsaI GTAC 1 cut(s) 6
RsaNI GTAC 1 cut(s) 5
RseI CAYNNNNRTG 2 cut(s) 89, 177
SaqAI TTAA 2 cut(s) 26, 45
Sau3AI GATC 1 cut(s) 65
Sau96I GGNCC 1 cut(s) 320
SchI GAGTC 1 cut(s) 103
SduI GDGCHC 1 cut(s) 268
SetI ASST 6 cut(s) 211, 286, 334, 392, 409, 421
SfaNI GCATC 2 cut(s) 191, 325
SinI GGWCC 1 cut(s) 320
SmiMI CAYNNNNRTG 2 cut(s) 89, 177
Sse9I AATT 3 cut(s) 11, 127, 299
SspMI CTAG 2 cut(s) 161, 408
StyI CCWWGG 3 cut(s) 144, 205, 407
TaaI ACNGT 1 cut(s) 489
TaqI TCGA 1 cut(s) 351
TasI AATT 3 cut(s) 11, 127, 299
TfiI GAWTC 1 cut(s) 348
Tru1I TTAA 2 cut(s) 26, 45
Tru9I TTAA 2 cut(s) 26, 45
TspDTI ATGAA 1 cut(s) 65
VneI GTGCAC 1 cut(s) 264
VpaK11BI GGWCC 1 cut(s) 320
XapI RAATTY 1 cut(s) 299
XmaJI CCTAGG 1 cut(s) 407
XspI CTAG 2 cut(s) 161, 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.