Prupe.4G250600_v2.0.a1
MADS Family

MADS

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Reverse (-)
16765040 .. 16765609
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G250600.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 570 bp
ATGGAGGCCACCATCTCAAAGCGCCGCAAGGGTTTGTTTCGCGAAGCCACCGACCTTGACTCCTCCTCCTCGTCTGGTTTTAAGATGGCCGTTATAGTCTTTTCCCCAGCCAACAAGCCCTATGTATACGGTCACCCCTCCGCGGTCTCTGTCTTATATCGCTTTCTTGGCGAACAAGATGCTGATGATGACGACGAAGATGACGACGACAACGAAGATGACGAAGATGATGAAGATGACGATGATGACGATGAAGATGATGAAGATGATGAAGATGACGATGATGACGATGAAGATGATGAAGATGATGAAGATGATGATGGTGTTGTTATTGATGAAGATTTAGAAGCCAATCAAGAGAAAGCAGTGCAAGATGGTATAGATAAGTACGGGTTGAATGAGCATACGGGAGTGGATGAAGTAGATAAAAAAATAGCTACCCTAAAACATTTCATAAAGATACTGGATTTGAAGATAGATCATGAGATGAAGAGGAAAGACTCTTGCACCAAGGATAATAATTCAGAGATTGCTTCTTCTAGTGAAGAAAGAGATCAATCTGATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04013 ko04022 ko04111 ko04371 ko05418 map04011 map04013 map04022 map04111 map04371 map05418
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

190

Amino Acids

21.39

Weight (kDa)

4.05

Isoelectric Point (pI)

46.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 126
AccII CGCG 2 cut(s) 42, 143
AciI CCGC 3 cut(s) 25, 141, 143
AcoI YGGCCR 1 cut(s) 87
AfaI GTAC 1 cut(s) 389
AfiI CCNNNNNNNGG 1 cut(s) 142
AgsI TTSAA 2 cut(s) 397, 472
AluBI AGCT 1 cut(s) 437
AluI AGCT 1 cut(s) 437
Alw26I GTCTC 1 cut(s) 151
AoxI GGCC 2 cut(s) 6, 87
AspLEI GCGC 1 cut(s) 24
AsuHPI GGTGA 1 cut(s) 125
BccI CCATC 4 cut(s) 20, 79, 314, 368
BceAI ACGGC 1 cut(s) 74
BcgI CGANNNNNNTGC 2 cut(s) 161, 195
BcoDI GTCTC 1 cut(s) 151
BfaI CTAG 1 cut(s) 540
BfoI RGCGCY 1 cut(s) 25
BisI GCNGC 1 cut(s) 25
BlsI GCNGC 1 cut(s) 26
BmsI GCATC 1 cut(s) 169
BsaI GGTCTC 1 cut(s) 151
BsaJI CCNNGG 2 cut(s) 141, 510
BsaXI ACNNNNNCTCC 4 cut(s) 44, 50, 74, 80
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse1I ACTGG 1 cut(s) 468
BseDI CCNNGG 2 cut(s) 141, 510
BseGI GGATG 1 cut(s) 421
BseLI CCNNNNNNNGG 1 cut(s) 142
BseNI ACTGG 1 cut(s) 468
BseRI GAGGAG 3 cut(s) 52, 55, 58
BseYI CCCAGC 1 cut(s) 106
Bsh1236I CGCG 2 cut(s) 42, 143
BshFI GGCC 2 cut(s) 8, 89
BslI CCNNNNNNNGG 1 cut(s) 142
BsmAI GTCTC 1 cut(s) 151
BsnI GGCC 2 cut(s) 8, 89
Bso31I GGTCTC 1 cut(s) 151
Bsp143I GATC 2 cut(s) 478, 553
Bsp68I TCGCGA 1 cut(s) 42
BspACI CCGC 3 cut(s) 25, 141, 143
BspANI GGCC 2 cut(s) 8, 89
BspFNI CGCG 2 cut(s) 42, 143
BspHI TCATGA 1 cut(s) 481
BspTNI GGTCTC 1 cut(s) 151
BsrI ACTGG 1 cut(s) 468
BssECI CCNNGG 2 cut(s) 141, 510
BssMI GATC 2 cut(s) 478, 553
BssNAI GTATAC 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 510
Bst1107I GTATAC 1 cut(s) 127
Bst4CI ACNGT 1 cut(s) 131
Bst6I CTCTTC 1 cut(s) 485
BstDSI CCRYGG 1 cut(s) 141
BstEII GGTNACC 1 cut(s) 131
BstF5I GGATG 1 cut(s) 421
BstFNI CGCG 2 cut(s) 42, 143
BstH2I RGCGCY 1 cut(s) 25
BstHHI GCGC 1 cut(s) 24
BstKTI GATC 2 cut(s) 481, 556
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 2 cut(s) 478, 553
BstMWI GCNNNNNNNGC 1 cut(s) 168
BstPI GGTNACC 1 cut(s) 131
BstUI CGCG 2 cut(s) 42, 143
BstZ17I GTATAC 1 cut(s) 127
BsuRI GGCC 2 cut(s) 8, 89
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 1 cut(s) 421
BtsI GCAGTG 1 cut(s) 372
BtsIMutI CAGTG 1 cut(s) 372
BtuMI TCGCGA 1 cut(s) 42
CciI TCATGA 1 cut(s) 481
CfoI GCGC 1 cut(s) 24
Cfr42I CCGCGG 1 cut(s) 144
Csp6I GTAC 1 cut(s) 388
CspCI CAANNNNNGTGG 2 cut(s) 37, 72
CviAII CATG 1 cut(s) 482
CviJI RGCY 7 cut(s) 8, 47, 89, 110, 118, 350, 437
CviKI_1 RGCY 7 cut(s) 8, 47, 89, 110, 118, 350, 437
CviQI GTAC 1 cut(s) 388
DpnI GATC 2 cut(s) 480, 555
DpnII GATC 2 cut(s) 478, 553
EaeI YGGCCR 1 cut(s) 87
Eam1104I CTCTTC 1 cut(s) 485
EarI CTCTTC 1 cut(s) 485
Eco130I CCWWGG 1 cut(s) 510
Eco31I GGTCTC 1 cut(s) 151
Eco91I GGTNACC 1 cut(s) 131
EcoO65I GGTNACC 1 cut(s) 131
EcoT14I CCWWGG 1 cut(s) 510
ErhI CCWWGG 1 cut(s) 510
FaeI CATG 1 cut(s) 485
FaiI YATR 8 cut(s) 95, 123, 127, 157, 380, 405, 455, 483
FatI CATG 1 cut(s) 481
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 1 cut(s) 25
FokI GGATG 1 cut(s) 428
Fsp4HI GCNGC 1 cut(s) 25
FspBI CTAG 1 cut(s) 540
GlaI GCGC 1 cut(s) 23
GluI GCNGC 1 cut(s) 25
GsaI CCCAGC 1 cut(s) 110
HaeII RGCGCY 1 cut(s) 25
HaeIII GGCC 2 cut(s) 8, 89
HhaI GCGC 1 cut(s) 24
Hin1II CATG 1 cut(s) 485
Hin6I GCGC 1 cut(s) 22
HinP1I GCGC 1 cut(s) 22
HinfI GANTC 2 cut(s) 59, 500
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 2 cut(s) 526, 562
Hpy188III TCNNGA 3 cut(s) 41, 356, 482
Hpy8I GTNNAC 1 cut(s) 127
Hpy99I CGWCG 2 cut(s) 197, 209
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4V TGCA 2 cut(s) 370, 507
HpyF10VI GCNNNNNNNGC 1 cut(s) 168
Hsp92II CATG 1 cut(s) 485
HspAI GCGC 1 cut(s) 22
KspI CCGCGG 1 cut(s) 144
Kzo9I GATC 2 cut(s) 478, 553
LpnPI CCDG 3 cut(s) 60, 120, 449
LweI GCATC 1 cut(s) 169
MaeI CTAG 1 cut(s) 540
MaeIII GTNAC 1 cut(s) 131
MalI GATC 2 cut(s) 480, 555
MboI GATC 2 cut(s) 478, 553
MluCI AATT 2 cut(s) 520, 565
MlyI GAGTC 2 cut(s) 53, 494
MnlI CCTC 5 cut(s) 73, 76, 79, 148, 486
MseI TTAA 1 cut(s) 81
MspA1I CMGCKG 1 cut(s) 143
MvnI CGCG 2 cut(s) 42, 143
MwoI GCNNNNNNNGC 1 cut(s) 168
NdeII GATC 2 cut(s) 478, 553
NlaIII CATG 1 cut(s) 485
NmuCI GTSAC 1 cut(s) 131
NruI TCGCGA 1 cut(s) 42
PagI TCATGA 1 cut(s) 481
PcsI WCGNNNNNNNCGW 5 cut(s) 201, 210, 219, 246, 285
PkrI GCNGC 1 cut(s) 26
PleI GAGTC 2 cut(s) 53, 494
PpsI GAGTC 2 cut(s) 53, 494
PspEI GGTNACC 1 cut(s) 131
PspFI CCCAGC 1 cut(s) 106
RruI TCGCGA 1 cut(s) 42
RsaI GTAC 1 cut(s) 389
RsaNI GTAC 1 cut(s) 388
SacII CCGCGG 1 cut(s) 144
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 1 cut(s) 25
Sau3AI GATC 2 cut(s) 478, 553
SchI GAGTC 2 cut(s) 53, 494
SetI ASST 2 cut(s) 57, 439
SfaNI GCATC 1 cut(s) 169
Sfr303I CCGCGG 1 cut(s) 144
SgrBI CCGCGG 1 cut(s) 144
Sse9I AATT 2 cut(s) 520, 565
SsiI CCGC 3 cut(s) 25, 141, 143
SspMI CTAG 1 cut(s) 540
StyI CCWWGG 1 cut(s) 510
TaaI ACNGT 1 cut(s) 131
TasI AATT 2 cut(s) 520, 565
TauI GCSGC 1 cut(s) 27
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TscAI CASTG 1 cut(s) 372
TseFI GTSAC 1 cut(s) 131
Tsp45I GTSAC 1 cut(s) 131
TspRI CASTG 1 cut(s) 372
XmiI GTMKAC 1 cut(s) 126
XspI CTAG 1 cut(s) 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.