Prupe.4G254400_v2.0.a1

ATP-citrate synthase alpha chain protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Reverse (-)
17540453 .. 17540901
449 bp
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UTR
Exon/CDS
Intron
Prupe.4G254400.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 183 bp
ATGCTATCCGATGGCAAGGAGCTTGAGATGGGAGGCTGTAACGCACTTATAGTAGAGTCACTAATGCCTTATGATCAAGAATTTTACCTTTCGATTGTTTTTGAAAGGCTTGGATCGACTGTGAGCCTTTCGAGTGTAGAGGTATTGAAATTGACAAAGGGGGTGGGGGAGAAAAGAAATTGA

Protein Analysis

61

Amino Acids

6.61

Weight (kDa)

4.69

Isoelectric Point (pI)

34.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 121
AcsI RAATTY 1 cut(s) 80
AgsI TTSAA 2 cut(s) 104, 148
AluBI AGCT 1 cut(s) 22
AluI AGCT 1 cut(s) 22
AlwI GGATC 1 cut(s) 121
ApoI RAATTY 1 cut(s) 80
BccI CCATC 2 cut(s) 5, 22
BclI TGATCA 1 cut(s) 73
BpuEI CTTGAG 1 cut(s) 44
Bsp143I GATC 2 cut(s) 73, 113
BspPI GGATC 1 cut(s) 121
BssMI GATC 2 cut(s) 73, 113
Bst4CI ACNGT 1 cut(s) 121
BstKTI GATC 2 cut(s) 76, 116
BstMBI GATC 2 cut(s) 73, 113
CspCI CAANNNNNGTGG 2 cut(s) 144, 179
CviJI RGCY 4 cut(s) 22, 36, 109, 126
CviKI_1 RGCY 4 cut(s) 22, 36, 109, 126
DpnI GATC 2 cut(s) 75, 115
DpnII GATC 2 cut(s) 73, 113
FaiI YATR 2 cut(s) 50, 72
FbaI TGATCA 1 cut(s) 73
HinfI GANTC 1 cut(s) 56
Hpy188I TCNGA 1 cut(s) 10
Hpy188III TCNNGA 1 cut(s) 77
HpyCH4III ACNGT 1 cut(s) 121
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 2 cut(s) 73, 113
LmnI GCTCC 1 cut(s) 19
MaeIII GTNAC 2 cut(s) 38, 57
MalI GATC 2 cut(s) 75, 115
MboI GATC 2 cut(s) 73, 113
MluCI AATT 3 cut(s) 80, 149, 178
MlyI GAGTC 1 cut(s) 65
MnlI CCTC 2 cut(s) 26, 133
NdeII GATC 2 cut(s) 73, 113
NmuCI GTSAC 1 cut(s) 57
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
Sau3AI GATC 2 cut(s) 73, 113
SchI GAGTC 1 cut(s) 65
SetI ASST 3 cut(s) 24, 90, 144
SgeI CNNG 5 cut(s) 28, 35, 89, 122, 144
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 3 cut(s) 80, 149, 178
TaaI ACNGT 1 cut(s) 121
TaqI TCGA 3 cut(s) 92, 116, 131
TasI AATT 3 cut(s) 80, 149, 178
TseFI GTSAC 1 cut(s) 57
Tsp45I GTSAC 1 cut(s) 57
XapI RAATTY 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.