Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

17761940 .. 17763453

Gene Structure 1514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G255400.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGCTTCATTTTGTGAGATTATAGCTAACAAACCATATGTGGTTTCTGCGTTCCTACTTCTTGGGCTTTTGACATTAAGCTCCACAACAACAGGTGCAGAGTCAATAGGAGTTTGTTATGGTCGGGTTGCCAACAACCTGCCGCCTGATCCAGAAGTTATAAGTCTCTACCAAGCAAATGGCATAACAAGAATGCGAATTTTCGATCCGAATCCTCCAACTCTCCAAGCCCTGAAAGGATCCAACATCGAACTTATCGTGGGCGTTCGAAACCAAGACATCCAGTCCCTTGGAAATGACGTTGCAGCTGCCACTGCTTGGGTTCAAAACAATGTCCTAAACTACTTCCCTGATGTCAAGTTTAGGTACATTGCAGTGGGCAATGAGATCAAGCCCCAAGATGCAGAAGCAAAATATGTTCTAGCAGCCATGAAAAACATTAAAACCGCAATTGCATCTGCCAATTTGCAGGACCAAATCAAAGTTTCAACAGCCATAGACATGTCTCTGTTGGGCAGTTCTTATCCACCGTCAACAGGCTCATTTAGTGCTGCTGCGAGTTCATACATAAACCCTATCATTGCCTTCCTTGCAAGTAATGGCTCTCCATTTCTTGCCAATGTGTATCCTTATTTCAGCTACATCAGTGACACCAAAGACATCAGCCTTGGCTATGCCCTATTTGCTGCACCTGGGGTGACAGTACAAGATGGTGCATTTGGGTACACAAATCTCTTTGCTGCAGCTGTGGATGCCCTCTACTCTGCTCTTGAGAAAGCTGGCGGTTCGAGTGTGGAGATCGTTGTATCGGAGACCGGTTGGCCATCGGAAGGCGGCGAAGGAGCCACAGTTGAAAATGCAAGCACTTACTACAAGAATTTAATTGACAGTGTGAAGGGAGGGACTCCCAAGAGGCGTGGAAAACCTGTAGAAACCTACTTGTTTGCCATGTTTGATGAAAACCAAAAGGGTCCTGCAGAAATTGAGCGGCATTTTGGTCTCTTCTCTCCTGATAAACAACCCAAGTACCAAATTAGGTTCAATGAGAAGAACAAAGCTTTAGCCAATAGGTGTACTCCTATTAAGAGCAGTCATGTAGTGTATTGGTCAATTCTCTTCTCTTCTCTTCTCTTCTTTAATAAATCACAAGGGCACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

387

Amino Acids

41.71

Weight (kDa)

6.84

Isoelectric Point (pI)

36.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	161
Acc36I	ACCTGC	1 cut(s)	147
AccB7I	CCANNNNNTGG	1 cut(s)	318
AccBSI	CCGCTC	1 cut(s)	988
AciI	CCGC	5 cut(s)	143, 447, 783, 834, 988
AclWI	GGATC	4 cut(s)	143, 200, 234, 247
AcoI	YGGCCR	1 cut(s)	821
AcsI	RAATTY	2 cut(s)	198, 877
AfaI	GTAC	5 cut(s)	368, 705, 725, 1028, 1075
AfiI	CCNNNNNNNGG	3 cut(s)	318, 536, 830
AflIII	ACRYGT	1 cut(s)	501
AgeI	ACCGGT	1 cut(s)	815
AgsI	TTSAA	4 cut(s)	326, 489, 854, 1042
AhdI	GACNNNNNGTC	1 cut(s)	283
AjnI	CCWGG	1 cut(s)	691
AluBI	AGCT	7 cut(s)	26, 81, 308, 639, 746, 779, 1058
AluI	AGCT	7 cut(s)	26, 81, 308, 639, 746, 779, 1058
Alw26I	GTCTC	4 cut(s)	170, 510, 806, 1004
AlwI	GGATC	4 cut(s)	143, 200, 234, 247
AoxI	GGCC	1 cut(s)	821
ApeKI	GCWGC	8 cut(s)	305, 308, 425, 551, 554, 686, 740, 743
ApoI	RAATTY	2 cut(s)	198, 877
AsiGI	ACCGGT	1 cut(s)	815
AspS9I	GGNCC	2 cut(s)	472, 971
AsuHPI	GGTGA	1 cut(s)	709
AsuII	TTCGAA	1 cut(s)	268
AvaII	GGWCC	2 cut(s)	472, 971
BaeGI	GKGCMC	1 cut(s)	1155
BaeI	ACNNNNGTAYC	2 cut(s)	1010, 1043
BalI	TGGCCA	1 cut(s)	823
BamHI	GGATCC	1 cut(s)	239
BbvI	GCAGC	8 cut(s)	295, 317, 437, 538, 541, 673, 727, 755
BccI	CCATC	2 cut(s)	704, 832
BciT130I	CCWGG	1 cut(s)	693
BciVI	GTATCC	1 cut(s)	636
BcoDI	GTCTC	4 cut(s)	170, 510, 806, 1004
BfaI	CTAG	1 cut(s)	422
BfmI	CTRYAG	3 cut(s)	741, 927, 975
BfuAI	ACCTGC	1 cut(s)	147
BfuI	GTATCC	1 cut(s)	636
Bme1390I	CCNGG	1 cut(s)	693
Bme18I	GGWCC	2 cut(s)	472, 971
BmeRI	GACNNNNNGTC	1 cut(s)	283
BmgT120I	GGNCC	2 cut(s)	472, 971
BmiI	GGNNCC	3 cut(s)	241, 844, 972
BmrFI	CCNGG	1 cut(s)	693
BmsI	GCATC	3 cut(s)	391, 464, 742
Bpu14I	TTCGAA	1 cut(s)	268
BpuEI	CTTGAG	1 cut(s)	791
BsaBI	GATNNNNATC	1 cut(s)	210
BsaI	GGTCTC	2 cut(s)	806, 1004
BsaJI	CCNNGG	3 cut(s)	289, 667, 692
BsaWI	WCCGGW	1 cut(s)	815
BsaXI	ACNNNNNCTCC	2 cut(s)	834, 864
Bsc4I	CCNNNNNNNGG	3 cut(s)	318, 536, 830
Bse118I	RCCGGY	1 cut(s)	815
Bse1I	ACTGG	1 cut(s)	283
Bse3DI	GCAATG	3 cut(s)	369, 388, 579
Bse8I	GATNNNNATC	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	693
BseDI	CCNNGG	3 cut(s)	289, 667, 692
BseGI	GGATG	2 cut(s)	279, 757
BseJI	GATNNNNATC	1 cut(s)	210
BseLI	CCNNNNNNNGG	3 cut(s)	318, 536, 830
BseMI	GCAATG	3 cut(s)	369, 388, 579
BseNI	ACTGG	1 cut(s)	283
BseSI	GKGCMC	1 cut(s)	1155
BseXI	GCAGC	8 cut(s)	295, 317, 437, 538, 541, 673, 727, 755
BsgI	GTGCAG	2 cut(s)	117, 672
BshFI	GGCC	1 cut(s)	823
BshTI	ACCGGT	1 cut(s)	815
BsiSI	CCGG	1 cut(s)	816
BslFI	GGGAC	2 cut(s)	271, 916
BslI	CCNNNNNNNGG	3 cut(s)	318, 536, 830
BsmAI	GTCTC	4 cut(s)	170, 510, 806, 1004
BsmFI	GGGAC	2 cut(s)	271, 916
BsmI	GAATGC	1 cut(s)	198
BsnI	GGCC	1 cut(s)	823
Bso31I	GGTCTC	2 cut(s)	806, 1004
Bsp119I	TTCGAA	1 cut(s)	268
Bsp1286I	GDGCHC	1 cut(s)	1155
Bsp143I	GATC	5 cut(s)	148, 205, 239, 387, 798
BspACI	CCGC	5 cut(s)	143, 447, 783, 834, 988
BspANI	GGCC	1 cut(s)	823
BspLI	GGNNCC	3 cut(s)	241, 844, 972
BspMAI	CTGCAG	2 cut(s)	745, 979
BspMI	ACCTGC	1 cut(s)	147
BspPI	GGATC	4 cut(s)	143, 200, 234, 247
BspT104I	TTCGAA	1 cut(s)	268
BspTNI	GGTCTC	2 cut(s)	806, 1004
BsrBI	CCGCTC	1 cut(s)	988
BsrDI	GCAATG	3 cut(s)	369, 388, 579
BsrFI	RCCGGY	1 cut(s)	815
BsrI	ACTGG	1 cut(s)	283
BssAI	RCCGGY	1 cut(s)	815
BssECI	CCNNGG	3 cut(s)	289, 667, 692
BssMI	GATC	5 cut(s)	148, 205, 239, 387, 798
BssT1I	CCWWGG	2 cut(s)	289, 667
Bst2UI	CCWGG	1 cut(s)	693
Bst4CI	ACNGT	4 cut(s)	531, 703, 850, 890
Bst6I	CTCTTC	5 cut(s)	1007, 1121, 1126, 1131, 1136
BstBI	TTCGAA	1 cut(s)	268
BstC8I	GCNNGC	2 cut(s)	781, 862
BstF5I	GGATG	2 cut(s)	279, 757
BstKTI	GATC	5 cut(s)	151, 208, 242, 390, 801
BstMAI	GTCTC	4 cut(s)	170, 510, 806, 1004
BstMBI	GATC	5 cut(s)	148, 205, 239, 387, 798
BstMWI	GCNNNNNNNGC	4 cut(s)	314, 590, 683, 752
BstNI	CCWGG	1 cut(s)	693
BstNSI	RCATGY	1 cut(s)	505
BstSCI	CCNGG	1 cut(s)	691
BstSFI	CTRYAG	3 cut(s)	741, 927, 975
BstSLI	GKGCMC	1 cut(s)	1155
BstV1I	GCAGC	8 cut(s)	295, 317, 437, 538, 541, 673, 727, 755
BstX2I	RGATCY	1 cut(s)	239
BstXI	CCANNNNNNTGG	2 cut(s)	179, 290
BstYI	RGATCY	1 cut(s)	239
BsuI	GTATCC	1 cut(s)	636
BsuRI	GGCC	1 cut(s)	823
BtsCI	GGATG	2 cut(s)	279, 757
BtsI	GCAGTG	2 cut(s)	312, 381
BtsIMutI	CAGTG	4 cut(s)	312, 381, 652, 895
BveI	ACCTGC	1 cut(s)	147
Cac8I	GCNNGC	2 cut(s)	781, 862
Cfr10I	RCCGGY	1 cut(s)	815
Cfr13I	GGNCC	2 cut(s)	472, 971
Csp6I	GTAC	5 cut(s)	367, 704, 724, 1027, 1074
CspAI	ACCGGT	1 cut(s)	815
CspCI	CAANNNNNGTGG	2 cut(s)	898, 933
CviAII	CATG	4 cut(s)	430, 502, 949, 1094
CviQI	GTAC	5 cut(s)	367, 704, 724, 1027, 1074
DpnI	GATC	5 cut(s)	150, 207, 241, 389, 800
DpnII	GATC	5 cut(s)	148, 205, 239, 387, 798
DriI	GACNNNNNGTC	1 cut(s)	283
EaeI	YGGCCR	1 cut(s)	821
Eam1104I	CTCTTC	5 cut(s)	1007, 1121, 1126, 1131, 1136
Eam1105I	GACNNNNNGTC	1 cut(s)	283
EarI	CTCTTC	5 cut(s)	1007, 1121, 1126, 1131, 1136
Eco130I	CCWWGG	2 cut(s)	289, 667
Eco31I	GGTCTC	2 cut(s)	806, 1004
Eco47I	GGWCC	2 cut(s)	472, 971
EcoO109I	RGGNCCY	1 cut(s)	971
EcoRII	CCWGG	1 cut(s)	691
EcoT14I	CCWWGG	2 cut(s)	289, 667
ErhI	CCWWGG	2 cut(s)	289, 667
FaeI	CATG	4 cut(s)	433, 505, 952, 1097
FaqI	GGGAC	2 cut(s)	271, 916
FatI	CATG	4 cut(s)	429, 501, 948, 1093
FauNDI	CATATG	1 cut(s)	37
FokI	GGATG	2 cut(s)	266, 764
FspBI	CTAG	1 cut(s)	422
HaeIII	GGCC	1 cut(s)	823
HapII	CCGG	1 cut(s)	816
Hin1II	CATG	4 cut(s)	433, 505, 952, 1097
HincII	GTYRAC	1 cut(s)	534
HindII	GTYRAC	1 cut(s)	534
HindIII	AAGCTT	1 cut(s)	1056
HinfI	GANTC	3 cut(s)	101, 211, 904
HpaII	CCGG	1 cut(s)	816
HphI	GGTGA	1 cut(s)	709
Hpy166II	GTNNAC	3 cut(s)	534, 726, 1074
Hpy188I	TCNGA	3 cut(s)	210, 811, 829
Hpy188III	TCNNGA	3 cut(s)	152, 770, 1010
Hpy8I	GTNNAC	3 cut(s)	534, 726, 1074
HpyAV	CCTTC	4 cut(s)	595, 824, 833, 889
HpyCH4III	ACNGT	4 cut(s)	531, 703, 850, 890
HpyCH4IV	ACGT	1 cut(s)	300
HpyF10VI	GCNNNNNNNGC	4 cut(s)	314, 590, 683, 752
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	4 cut(s)	433, 505, 952, 1097
Kzo9I	GATC	5 cut(s)	148, 205, 239, 387, 798
LmnI	GCTCC	2 cut(s)	86, 842
Lsp1109I	GCAGC	8 cut(s)	295, 317, 437, 538, 541, 673, 727, 755
LweI	GCATC	3 cut(s)	391, 464, 742
MaeI	CTAG	1 cut(s)	422
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	2 cut(s)	647, 697
MalI	GATC	5 cut(s)	150, 207, 241, 389, 800
MbiI	CCGCTC	1 cut(s)	988
MboI	GATC	5 cut(s)	148, 205, 239, 387, 798
MboII	GAAGA	6 cut(s)	994, 1060, 1108, 1113, 1118, 1123
MfeI	CAATTG	1 cut(s)	450
MflI	RGATCY	1 cut(s)	239
MhlI	GDGCHC	1 cut(s)	1155
MlsI	TGGCCA	1 cut(s)	823
MluCI	AATT	8 cut(s)	198, 450, 463, 877, 882, 981, 1032, 1110
MluNI	TGGCCA	1 cut(s)	823
MlyI	GAGTC	2 cut(s)	110, 898
MmeI	TCCRAC	2 cut(s)	242, 267
MnlI	CCTC	4 cut(s)	225, 767, 893, 906
Mox20I	TGGCCA	1 cut(s)	823
MscI	TGGCCA	1 cut(s)	823
MseI	TTAA	5 cut(s)	77, 441, 881, 1083, 1137
MslI	CAYNNNNRTG	2 cut(s)	374, 500
Msp20I	TGGCCA	1 cut(s)	823
MspA1I	CMGCKG	2 cut(s)	308, 746
MspI	CCGG	1 cut(s)	816
MspR9I	CCNGG	1 cut(s)	693
MunI	CAATTG	1 cut(s)	450
Mva1269I	GAATGC	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	693
MwoI	GCNNNNNNNGC	4 cut(s)	314, 590, 683, 752
NdeI	CATATG	1 cut(s)	37
NdeII	GATC	5 cut(s)	148, 205, 239, 387, 798
NlaIII	CATG	4 cut(s)	433, 505, 952, 1097
NlaIV	GGNNCC	3 cut(s)	241, 844, 972
NmuCI	GTSAC	2 cut(s)	647, 697
NspI	RCATGY	1 cut(s)	505
NspV	TTCGAA	1 cut(s)	268
PciI	ACATGT	1 cut(s)	501
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PctI	GAATGC	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	211
PflMI	CCANNNNNTGG	1 cut(s)	318
PinAI	ACCGGT	1 cut(s)	815
PleI	GAGTC	2 cut(s)	109, 898
PpsI	GAGTC	2 cut(s)	109, 898
PpuMI	RGGWCCY	1 cut(s)	971
PscI	ACATGT	1 cut(s)	501
PsiI	TTATAA	1 cut(s)	161
Psp5II	RGGWCCY	1 cut(s)	971
Psp6I	CCWGG	1 cut(s)	691
PspGI	CCWGG	1 cut(s)	691
PspN4I	GGNNCC	3 cut(s)	241, 844, 972
PspPI	GGNCC	2 cut(s)	472, 971
PspPPI	RGGWCCY	1 cut(s)	971
PstI	CTGCAG	2 cut(s)	745, 979
PsuI	RGATCY	1 cut(s)	239
PvuII	CAGCTG	2 cut(s)	308, 746
RsaI	GTAC	5 cut(s)	368, 705, 725, 1028, 1075
RsaNI	GTAC	5 cut(s)	367, 704, 724, 1027, 1074
RseI	CAYNNNNRTG	2 cut(s)	374, 500
SaqAI	TTAA	5 cut(s)	77, 441, 881, 1083, 1137
Sau3AI	GATC	5 cut(s)	148, 205, 239, 387, 798
Sau96I	GGNCC	2 cut(s)	472, 971
SchI	GAGTC	2 cut(s)	110, 898
ScrFI	CCNGG	1 cut(s)	693
SduI	GDGCHC	1 cut(s)	1155
SfaNI	GCATC	3 cut(s)	391, 464, 742
SfcI	CTRYAG	3 cut(s)	741, 927, 975
SfuI	TTCGAA	1 cut(s)	268
SinI	GGWCC	2 cut(s)	472, 971
SmiMI	CAYNNNNRTG	2 cut(s)	374, 500
SmlI	CTYRAG	1 cut(s)	770
SmoI	CTYRAG	1 cut(s)	770
Sse9I	AATT	8 cut(s)	198, 450, 463, 877, 882, 981, 1032, 1110
SsiI	CCGC	5 cut(s)	143, 447, 783, 834, 988
SspMI	CTAG	1 cut(s)	422
StyD4I	CCNGG	1 cut(s)	691
StyI	CCWWGG	2 cut(s)	289, 667
TaaI	ACNGT	4 cut(s)	531, 703, 850, 890
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	4 cut(s)	204, 249, 268, 788
TasI	AATT	8 cut(s)	198, 450, 463, 877, 882, 981, 1032, 1110
TatI	WGTACW	2 cut(s)	703, 1073
TauI	GCSGC	3 cut(s)	145, 837, 991
TfiI	GAWTC	1 cut(s)	211
Tru1I	TTAA	5 cut(s)	77, 441, 881, 1083, 1137
Tru9I	TTAA	5 cut(s)	77, 441, 881, 1083, 1137
TscAI	CASTG	4 cut(s)	319, 381, 652, 895
TseFI	GTSAC	2 cut(s)	647, 697
TseI	GCWGC	8 cut(s)	305, 308, 425, 551, 554, 686, 740, 743
Tsp45I	GTSAC	2 cut(s)	647, 697
TspDTI	ATGAA	3 cut(s)	446, 552, 972
TspRI	CASTG	4 cut(s)	319, 381, 652, 895
Van91I	CCANNNNNTGG	1 cut(s)	318
VpaK11BI	GGWCC	2 cut(s)	472, 971
XapI	RAATTY	2 cut(s)	198, 877
XceI	RCATGY	1 cut(s)	505
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.