Prupe.4G256600_v2.0.a1

Cytochrome C oxidase, subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Forward (+)
18061668 .. 18063121
1454 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G256600.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 453 bp
ATGCAGGATTTGCAGCCAACAGAATTTGATGATATTGGCCATATTGTTGGTTCATCTACTTCTAAAGGTGATGGTGTAGTTGGAACACAAGAGAGCATTGCTATGCAGCATACAACGGAAACAAATCCAGTTTGCAACAGGTCCCCAAAAGTGAGTCGTTTTTGGACCAACTGGACATTCAAGAATACTTGGAATGATGCCATATCACAGCTGCTTAGAATCTCTGTAAAGTCAGAAGAAGAAAAAGACCATTCACTAATGACAAGATACATAAGGGCAAAATCTAAACATAGCCCTCGACCAAGCGTTGTCAAGGAGATACGTTATGGCATGGTGCTTGCTTTGGCTACTGGAAAGCTTTGGAAAATGCATCATTGGAATGAGCAGAGGAAAGTGAGGGTGTTCCATGACTTGCTTGAAAAAGGTGAAATTAGAGTTGTTGCTAGGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

17.34

Weight (kDa)

9.48

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 37
AcsI RAATTY 1 cut(s) 23
AgsI TTSAA 2 cut(s) 181, 419
AjuI GAANNNNNNNTTGG 2 cut(s) 161, 193
AluBI AGCT 2 cut(s) 211, 358
AluI AGCT 2 cut(s) 211, 358
AoxI GGCC 1 cut(s) 37
ApeKI GCWGC 3 cut(s) 13, 106, 211
ApoI RAATTY 1 cut(s) 23
AspS9I GGNCC 2 cut(s) 141, 165
AsuHPI GGTGA 2 cut(s) 80, 437
AvaII GGWCC 2 cut(s) 141, 165
BalI TGGCCA 1 cut(s) 39
BbvI GCAGC 3 cut(s) 25, 118, 198
BccI CCATC 1 cut(s) 65
BfaI CTAG 1 cut(s) 444
BisI GCNGC 3 cut(s) 14, 107, 212
BlsI GCNGC 3 cut(s) 15, 108, 213
Bme18I GGWCC 2 cut(s) 141, 165
BmgT120I GGNCC 2 cut(s) 141, 165
BmiI GGNNCC 1 cut(s) 143
BmsI GCATC 2 cut(s) 187, 379
Bse1I ACTGG 3 cut(s) 128, 176, 355
Bse3DI GCAATG 1 cut(s) 96
BseMI GCAATG 1 cut(s) 96
BseNI ACTGG 3 cut(s) 128, 176, 355
BseXI GCAGC 3 cut(s) 25, 118, 198
BshFI GGCC 1 cut(s) 39
BslFI GGGAC 1 cut(s) 127
BsmFI GGGAC 1 cut(s) 127
BsnI GGCC 1 cut(s) 39
BspANI GGCC 1 cut(s) 39
BspLI GGNNCC 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 96
BsrI ACTGG 3 cut(s) 128, 176, 355
BstAPI GCANNNNNTGC 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 1 cut(s) 215
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstV1I GCAGC 3 cut(s) 25, 118, 198
BstXI CCANNNNNNTGG 1 cut(s) 47
BsuRI GGCC 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 339
Cfr13I GGNCC 2 cut(s) 141, 165
CviAII CATG 2 cut(s) 331, 407
CviJI RGCY 6 cut(s) 16, 39, 211, 294, 347, 358
CviKI_1 RGCY 6 cut(s) 16, 39, 211, 294, 347, 358
DdeI CTNAG 1 cut(s) 215
EaeI YGGCCR 1 cut(s) 37
Eco47I GGWCC 2 cut(s) 141, 165
EcoO109I RGGNCCY 1 cut(s) 141
EcoT22I ATGCAT 1 cut(s) 372
FaeI CATG 2 cut(s) 334, 410
FaiI YATR 9 cut(s) 42, 104, 111, 203, 272, 291, 327, 332, 408
FaqI GGGAC 1 cut(s) 127
FatI CATG 2 cut(s) 330, 406
Fnu4HI GCNGC 3 cut(s) 14, 107, 212
Fsp4HI GCNGC 3 cut(s) 14, 107, 212
FspBI CTAG 1 cut(s) 444
GluI GCNGC 3 cut(s) 14, 107, 212
HaeIII GGCC 1 cut(s) 39
Hin1II CATG 2 cut(s) 334, 410
HindIII AAGCTT 1 cut(s) 356
HinfI GANTC 2 cut(s) 154, 219
HphI GGTGA 2 cut(s) 80, 437
Hpy188I TCNGA 1 cut(s) 235
Hpy188III TCNNGA 1 cut(s) 181
HpyCH4IV ACGT 1 cut(s) 322
HpyCH4V TGCA 5 cut(s) 4, 13, 106, 135, 370
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 215
HpySE526I ACGT 1 cut(s) 322
Hsp92II CATG 2 cut(s) 334, 410
LpnPI CCDG 4 cut(s) 124, 141, 157, 336
Lsp1109I GCAGC 3 cut(s) 25, 118, 198
LweI GCATC 2 cut(s) 187, 379
MaeI CTAG 1 cut(s) 444
MaeII ACGT 1 cut(s) 322
MboII GAAGA 2 cut(s) 248, 251
MlsI TGGCCA 1 cut(s) 39
MluCI AATT 2 cut(s) 23, 429
MluNI TGGCCA 1 cut(s) 39
MlyI GAGTC 1 cut(s) 163
MmeI TCCRAC 1 cut(s) 61
MnlI CCTC 3 cut(s) 306, 381, 390
Mox20I TGGCCA 1 cut(s) 39
Mph1103I ATGCAT 1 cut(s) 372
MscI TGGCCA 1 cut(s) 39
MslI CAYNNNNRTG 2 cut(s) 101, 378
Msp20I TGGCCA 1 cut(s) 39
MspA1I CMGCKG 1 cut(s) 211
MwoI GCNNNNNNNGC 1 cut(s) 10
NlaIII CATG 2 cut(s) 334, 410
NlaIV GGNNCC 1 cut(s) 143
NsiI ATGCAT 1 cut(s) 372
PfeI GAWTC 1 cut(s) 219
PkrI GCNGC 3 cut(s) 15, 108, 213
PleI GAGTC 1 cut(s) 162
PpsI GAGTC 1 cut(s) 162
PpuMI RGGWCCY 1 cut(s) 141
Psp5II RGGWCCY 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 143
PspPI GGNCC 2 cut(s) 141, 165
PspPPI RGGWCCY 1 cut(s) 141
PvuII CAGCTG 1 cut(s) 211
RseI CAYNNNNRTG 2 cut(s) 101, 378
SatI GCNGC 3 cut(s) 14, 107, 212
Sau96I GGNCC 2 cut(s) 141, 165
SchI GAGTC 1 cut(s) 163
SetI ASST 6 cut(s) 70, 143, 213, 325, 360, 427
SfaNI GCATC 2 cut(s) 187, 379
SinI GGWCC 2 cut(s) 141, 165
SmiMI CAYNNNNRTG 2 cut(s) 101, 378
Sse9I AATT 2 cut(s) 23, 429
SspMI CTAG 1 cut(s) 444
TaiI ACGT 1 cut(s) 325
TaqI TCGA 1 cut(s) 298
TasI AATT 2 cut(s) 23, 429
TfiI GAWTC 1 cut(s) 219
TseI GCWGC 3 cut(s) 13, 106, 211
TspDTI ATGAA 1 cut(s) 42
TspGWI ACGGA 1 cut(s) 131
VpaK11BI GGWCC 2 cut(s) 141, 165
XapI RAATTY 1 cut(s) 23
XspI CTAG 1 cut(s) 444
Zsp2I ATGCAT 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.