Prupe.4G262800_v2.0.a1

oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Forward (+)
19169301 .. 19171964
2664 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G262800.1_v2.0.a1.CDS.4

Sequence Viewer

Length: 780 bp
ATGATGAAGACATTGTCAATGCTTTTCTCGTCGTCTATATTAAGTAGTGAAGTCCGGTATGCACTCGAAGAATACGGCTGTTTCGTGGCGTTTTATGATAAAGTTTCTGCAGAACTTCTAGACAAAATCTTTGGCCAGACCAAAGATCTGTTTGAGGTTCCAATTGAAAGCAAAATAAAGAACACAAGTGAGGAACCATATCGTGGGTATATTGGGCCAAACCCTCTCATGCCTCTCTATGAAGGCTTGGCCATCGACAATTTCACGTCCCCACAAGATACTCATAAATTCAGACAACTTATGTGGCCCGATGGCAAGAACAACTTCTGTGAGATCATAGATTCATATGCCGAGTTATTAGCAGGCTTGGAGCACACAGTGGAACAAATGCTGTTTGAAAGCTTTGAGGCAGCAAAGCAGTACGAGTCTGTTGCTAGCTACAACAGTCAACTTCTTAGGTTCCTCAAATATAACACACTAAAGGAAACTGATGCCACCTTAAGGTTTGCGAGCCATACAGACAAGAACTTTGCCACCATTGTTGTTCAGCACGATGTTGGTGGGTTGGAGGTCCAAACAAAGGAAGGTGATTGGATTAGCATTGAGTCGGCACCTTCACAGTTCTTGTTCATGGCCGGTGATGGATTGCAGGTATGGAGTAATGACAGAATACAAGCTTGCCACCATCGAGTGAAGGATTGGGGACAAGATAAGATACTCACTTGGGATGTTTACATTCAACAATGGGGTGTTGCAAGTACCGCAAGAACTAGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

260

Amino Acids

29.57

Weight (kDa)

4.89

Isoelectric Point (pI)

35.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 640
AccB1I GGYRCC 1 cut(s) 610
AccB7I CCANNNNNTGG 1 cut(s) 203
AciI CCGC 1 cut(s) 762
AcoI YGGCCR 3 cut(s) 133, 249, 633
AcsI RAATTY 1 cut(s) 287
AdeI CACNNNGTG 1 cut(s) 379
AfaI GTAC 2 cut(s) 422, 760
AfiI CCNNNNNNNGG 3 cut(s) 203, 501, 580
AflII CTTAAG 1 cut(s) 499
AgsI TTSAA 3 cut(s) 167, 398, 740
AhlI ACTAGT 1 cut(s) 770
AjiI CACGTC 1 cut(s) 267
AluBI AGCT 3 cut(s) 402, 438, 677
AluI AGCT 3 cut(s) 402, 438, 677
Alw21I GWGCWC 1 cut(s) 375
AoxI GGCC 5 cut(s) 133, 215, 249, 305, 633
ApeKI GCWGC 1 cut(s) 410
ApoI RAATTY 1 cut(s) 287
ArsI GACNNNNNNTTYG 4 cut(s) 113, 145, 512, 544
Asp700I GAANNNNTTC 1 cut(s) 323
AspS9I GGNCC 3 cut(s) 215, 306, 571
AsuHPI GGTGA 2 cut(s) 599, 650
AsuNHI GCTAGC 1 cut(s) 434
AvaII GGWCC 1 cut(s) 571
BalI TGGCCA 2 cut(s) 135, 251
BanI GGYRCC 1 cut(s) 610
BbsI GAAGAC 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 375
BbvI GCAGC 1 cut(s) 422
BccI CCATC 4 cut(s) 260, 305, 635, 693
BceAI ACGGC 1 cut(s) 91
BcgI CGANNNNNNTGC 2 cut(s) 413, 447
BcuI ACTAGT 1 cut(s) 770
BfaI CTAG 3 cut(s) 119, 435, 771
BfmI CTRYAG 1 cut(s) 108
BfrI CTTAAG 1 cut(s) 499
BfuAI ACCTGC 1 cut(s) 640
BglII AGATCT 1 cut(s) 145
BisI GCNGC 1 cut(s) 411
BlsI GCNGC 1 cut(s) 412
Bme18I GGWCC 1 cut(s) 571
BmgBI CACGTC 1 cut(s) 267
BmgT120I GGNCC 3 cut(s) 215, 306, 571
BmiI GGNNCC 4 cut(s) 159, 195, 461, 612
BmsI GCATC 1 cut(s) 481
BmtI GCTAGC 1 cut(s) 438
BpiI GAAGAC 1 cut(s) 14
BsaWI WCCGGW 1 cut(s) 54
Bsc4I CCNNNNNNNGG 3 cut(s) 203, 501, 580
Bse118I RCCGGY 1 cut(s) 635
BseGI GGATG 1 cut(s) 733
BseLI CCNNNNNNNGG 3 cut(s) 203, 501, 580
BseXI GCAGC 1 cut(s) 422
BshFI GGCC 5 cut(s) 135, 217, 251, 307, 635
BshNI GGYRCC 1 cut(s) 610
BsiHKAI GWGCWC 1 cut(s) 375
BsiSI CCGG 2 cut(s) 55, 636
BslFI GGGAC 2 cut(s) 253, 717
BslI CCNNNNNNNGG 3 cut(s) 203, 501, 580
BsmFI GGGAC 2 cut(s) 253, 717
BsnI GGCC 5 cut(s) 135, 217, 251, 307, 635
Bsp1286I GDGCHC 1 cut(s) 375
Bsp143I GATC 2 cut(s) 145, 333
BspACI CCGC 1 cut(s) 762
BspANI GGCC 5 cut(s) 135, 217, 251, 307, 635
BspLI GGNNCC 4 cut(s) 159, 195, 461, 612
BspMAI CTGCAG 1 cut(s) 112
BspMI ACCTGC 1 cut(s) 640
BspOI GCTAGC 1 cut(s) 438
BspT107I GGYRCC 1 cut(s) 610
BspTI CTTAAG 1 cut(s) 499
BsrFI RCCGGY 1 cut(s) 635
BssAI RCCGGY 1 cut(s) 635
BssMI GATC 2 cut(s) 145, 333
Bst4CI ACNGT 3 cut(s) 379, 446, 621
BstAFI CTTAAG 1 cut(s) 499
BstC8I GCNNGC 4 cut(s) 364, 436, 511, 679
BstDEI CTNAG 1 cut(s) 455
BstF5I GGATG 1 cut(s) 733
BstKTI GATC 2 cut(s) 148, 336
BstMBI GATC 2 cut(s) 145, 333
BstMWI GCNNNNNNNGC 1 cut(s) 761
BstSFI CTRYAG 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 422
BstV2I GAAGAC 1 cut(s) 14
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BsuRI GGCC 5 cut(s) 135, 217, 251, 307, 635
BtrI CACGTC 1 cut(s) 267
BtsCI GGATG 1 cut(s) 733
BtsIMutI CAGTG 1 cut(s) 384
BveI ACCTGC 1 cut(s) 640
Cac8I GCNNGC 4 cut(s) 364, 436, 511, 679
Cfr10I RCCGGY 1 cut(s) 635
Cfr13I GGNCC 3 cut(s) 215, 306, 571
Csp6I GTAC 2 cut(s) 421, 759
CspCI CAANNNNNGTGG 4 cut(s) 284, 319, 523, 558
CviAII CATG 2 cut(s) 229, 631
CviQI GTAC 2 cut(s) 421, 759
DdeI CTNAG 1 cut(s) 455
DpnI GATC 2 cut(s) 147, 335
DpnII GATC 2 cut(s) 145, 333
DraIII CACNNNGTG 1 cut(s) 379
EaeI YGGCCR 3 cut(s) 133, 249, 633
Eco47I GGWCC 1 cut(s) 571
FaeI CATG 2 cut(s) 232, 634
FalI AAGNNNNNCTT 2 cut(s) 308, 340
FaqI GGGAC 2 cut(s) 253, 717
FatI CATG 2 cut(s) 228, 630
FauNDI CATATG 1 cut(s) 346
Fnu4HI GCNGC 1 cut(s) 411
FokI GGATG 1 cut(s) 740
Fsp4HI GCNGC 1 cut(s) 411
FspBI CTAG 3 cut(s) 119, 435, 771
GluI GCNGC 1 cut(s) 411
HaeIII GGCC 5 cut(s) 135, 217, 251, 307, 635
HapII CCGG 2 cut(s) 55, 636
Hin1II CATG 2 cut(s) 232, 634
HincII GTYRAC 1 cut(s) 449
HindII GTYRAC 1 cut(s) 449
HindIII AAGCTT 2 cut(s) 400, 675
HinfI GANTC 3 cut(s) 341, 425, 605
HpaII CCGG 2 cut(s) 55, 636
HphI GGTGA 2 cut(s) 599, 650
Hpy166II GTNNAC 2 cut(s) 449, 733
Hpy188I TCNGA 1 cut(s) 293
Hpy188III TCNNGA 1 cut(s) 119
Hpy8I GTNNAC 2 cut(s) 449, 733
Hpy99I CGWCG 1 cut(s) 34
HpyAV CCTTC 4 cut(s) 236, 578, 624, 688
HpyCH4III ACNGT 3 cut(s) 379, 446, 621
HpyCH4IV ACGT 1 cut(s) 266
HpyCH4V TGCA 4 cut(s) 62, 110, 649, 755
HpyF10VI GCNNNNNNNGC 1 cut(s) 761
HpyF3I CTNAG 1 cut(s) 455
HpySE526I ACGT 1 cut(s) 266
Hsp92II CATG 2 cut(s) 232, 634
Kzo9I GATC 2 cut(s) 145, 333
LmnI GCTCC 1 cut(s) 370
LpnPI CCDG 5 cut(s) 68, 149, 348, 635, 649
Lsp1109I GCAGC 1 cut(s) 422
LweI GCATC 1 cut(s) 481
MaeI CTAG 3 cut(s) 119, 435, 771
MaeII ACGT 1 cut(s) 266
MalI GATC 2 cut(s) 147, 335
MboI GATC 2 cut(s) 145, 333
MboII GAAGA 2 cut(s) 19, 80
MfeI CAATTG 1 cut(s) 162
MflI RGATCY 1 cut(s) 145
MhlI GDGCHC 1 cut(s) 375
MlsI TGGCCA 2 cut(s) 135, 251
MluCI AATT 3 cut(s) 162, 259, 287
MluNI TGGCCA 2 cut(s) 135, 251
MlyI GAGTC 2 cut(s) 434, 614
MmeI TCCRAC 1 cut(s) 546
MnlI CCTC 7 cut(s) 148, 184, 234, 243, 400, 473, 562
Mox20I TGGCCA 2 cut(s) 135, 251
MroXI GAANNNNTTC 1 cut(s) 323
MscI TGGCCA 2 cut(s) 135, 251
MseI TTAA 2 cut(s) 41, 500
Msp20I TGGCCA 2 cut(s) 135, 251
MspCI CTTAAG 1 cut(s) 499
MspI CCGG 2 cut(s) 55, 636
MunI CAATTG 1 cut(s) 162
MwoI GCNNNNNNNGC 1 cut(s) 761
NdeI CATATG 1 cut(s) 346
NdeII GATC 2 cut(s) 145, 333
NheI GCTAGC 1 cut(s) 434
NlaIII CATG 2 cut(s) 232, 634
NlaIV GGNNCC 4 cut(s) 159, 195, 461, 612
NmeAIII GCCGAG 1 cut(s) 376
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PdmI GAANNNNTTC 1 cut(s) 323
PfeI GAWTC 1 cut(s) 341
PflFI GACNNNGTC 1 cut(s) 13
PflMI CCANNNNNTGG 1 cut(s) 203
PkrI GCNGC 1 cut(s) 412
PleI GAGTC 2 cut(s) 433, 613
PpsI GAGTC 2 cut(s) 433, 613
PspN4I GGNNCC 4 cut(s) 159, 195, 461, 612
PspPI GGNCC 3 cut(s) 215, 306, 571
PstI CTGCAG 1 cut(s) 112
PsuI RGATCY 1 cut(s) 145
PsyI GACNNNGTC 1 cut(s) 13
RsaI GTAC 2 cut(s) 422, 760
RsaNI GTAC 2 cut(s) 421, 759
SaqAI TTAA 2 cut(s) 41, 500
SatI GCNGC 1 cut(s) 411
Sau3AI GATC 2 cut(s) 145, 333
Sau96I GGNCC 3 cut(s) 215, 306, 571
SchI GAGTC 2 cut(s) 434, 614
SduI GDGCHC 1 cut(s) 375
SfaNI GCATC 1 cut(s) 481
SfcI CTRYAG 1 cut(s) 108
SinI GGWCC 1 cut(s) 571
SmlI CTYRAG 1 cut(s) 499
SmoI CTYRAG 1 cut(s) 499
SpeI ACTAGT 1 cut(s) 770
Sse9I AATT 3 cut(s) 162, 259, 287
SsiI CCGC 1 cut(s) 762
SspMI CTAG 3 cut(s) 119, 435, 771
TaaI ACNGT 3 cut(s) 379, 446, 621
TaiI ACGT 1 cut(s) 269
TaqI TCGA 3 cut(s) 66, 255, 688
TasI AATT 3 cut(s) 162, 259, 287
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 2 cut(s) 41, 500
Tru9I TTAA 2 cut(s) 41, 500
TscAI CASTG 1 cut(s) 384
TseI GCWGC 1 cut(s) 410
TspDTI ATGAA 4 cut(s) 20, 255, 333, 619
TspRI CASTG 1 cut(s) 384
Tth111I GACNNNGTC 1 cut(s) 13
Van91I CCANNNNNTGG 1 cut(s) 203
Vha464I CTTAAG 1 cut(s) 499
VpaK11BI GGWCC 1 cut(s) 571
XapI RAATTY 1 cut(s) 287
XbaI TCTAGA 1 cut(s) 118
XmnI GAANNNNTTC 1 cut(s) 323
XspI CTAG 3 cut(s) 119, 435, 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.