Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

19515777 .. 19517054

Gene Structure 1278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G264500.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGCTCTCTCTTGCTGGAGCTCTCTTTCTTGTTGTCTCTCTCTCTCTCTAGCTCGCTCGATCTCTCTTGCTGGCTGGCTCCATGAGAGCCTCCCTTCCTCCATTCCACAGAAAGTTTGCACTGATCTGGTTCGTGGTGCAAAGGACAAGAGGCTCCGGGTTAAGGGACCCGTGAGAATGCCAACCAAGATTCTGCACATTACCACCAGAAAGTCCCCTTGTGGTGAAGGCAAGGCTTATGGCTATGGCCATTTACTCAGAGTTGGGAGTTCTCTTGACAGATTTGAGTTGCGTGTCCACAAGAGGGTGATTGACCTCTTCAGCTCTCCTGATGTCGTCAAGCAAATTACTTCCGTTACAATTGAGCCTAGTGTGGAAGTGGAGGTTACAATCTCAGACTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko03010 map00520 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

135

Amino Acids

14.72

Weight (kDa)

9.43

Isoelectric Point (pI)

63.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	247
AcuI	CTGAAG	1 cut(s)	304
AfiI	CCNNNNNNNGG	2 cut(s)	163, 304
AluBI	AGCT	3 cut(s)	21, 53, 324
AluI	AGCT	3 cut(s)	21, 53, 324
Alw21I	GWGCWC	1 cut(s)	23
Alw26I	GTCTC	1 cut(s)	41
AoxI	GGCC	1 cut(s)	247
AspS9I	GGNCC	1 cut(s)	167
AsuC2I	CCSGG	1 cut(s)	158
AsuHPI	GGTGA	2 cut(s)	236, 319
AvaII	GGWCC	1 cut(s)	167
BalI	TGGCCA	1 cut(s)	249
BanII	GRGCYC	1 cut(s)	23
Bbv12I	GWGCWC	1 cut(s)	23
BcnI	CCSGG	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	41
BfaI	CTAG	2 cut(s)	50, 369
Bme1390I	CCNGG	1 cut(s)	158
Bme18I	GGWCC	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	4 cut(s)	80, 155, 168, 169
BmrFI	CCNGG	1 cut(s)	158
BpmI	CTGGAG	1 cut(s)	37
BpuMI	CCSGG	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 304
BseLI	CCNNNNNNNGG	2 cut(s)	163, 304
BseMII	CTCAG	1 cut(s)	271
BsgI	GTGCAG	1 cut(s)	179
BshFI	GGCC	1 cut(s)	249
BsiHKAI	GWGCWC	1 cut(s)	23
BsiSI	CCGG	1 cut(s)	157
BslFI	GGGAC	2 cut(s)	180, 199
BslI	CCNNNNNNNGG	2 cut(s)	163, 304
BsmAI	GTCTC	1 cut(s)	41
BsmFI	GGGAC	2 cut(s)	180, 199
BsmI	GAATGC	1 cut(s)	183
BsnI	GGCC	1 cut(s)	249
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp143I	GATC	2 cut(s)	60, 124
BspANI	GGCC	1 cut(s)	249
BspCNI	CTCAG	1 cut(s)	270
BspLI	GGNNCC	4 cut(s)	80, 155, 168, 169
BssMI	GATC	2 cut(s)	60, 124
Bst6I	CTCTTC	1 cut(s)	323
BstC8I	GCNNGC	3 cut(s)	55, 73, 77
BstDEI	CTNAG	2 cut(s)	257, 394
BstKTI	GATC	2 cut(s)	63, 127
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	2 cut(s)	60, 124
BstSCI	CCNGG	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	249
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	3 cut(s)	55, 73, 77
Cfr13I	GGNCC	1 cut(s)	167
CviAII	CATG	1 cut(s)	83
DdeI	CTNAG	2 cut(s)	257, 394
DpnI	GATC	2 cut(s)	62, 126
DpnII	GATC	2 cut(s)	60, 124
EaeI	YGGCCR	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	323
EarI	CTCTTC	1 cut(s)	323
Ecl136II	GAGCTC	1 cut(s)	21
Eco24I	GRGCYC	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	167
Eco53kI	GAGCTC	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	304
EcoICRI	GAGCTC	1 cut(s)	21
EcoO109I	RGGNCCY	1 cut(s)	167
EcoT38I	GRGCYC	1 cut(s)	23
FaeI	CATG	1 cut(s)	86
FaiI	YATR	3 cut(s)	84, 240, 246
FaqI	GGGAC	2 cut(s)	180, 199
FatI	CATG	1 cut(s)	82
FriOI	GRGCYC	1 cut(s)	23
FspBI	CTAG	2 cut(s)	50, 369
GsuI	CTGGAG	1 cut(s)	37
HaeIII	GGCC	1 cut(s)	249
HapII	CCGG	1 cut(s)	157
Hin1II	CATG	1 cut(s)	86
HinfI	GANTC	2 cut(s)	190, 398
HpaII	CCGG	1 cut(s)	157
HphI	GGTGA	2 cut(s)	236, 319
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	2 cut(s)	260, 397
Hpy188III	TCNNGA	2 cut(s)	275, 329
Hpy8I	GTNNAC	1 cut(s)	298
HpyAV	CCTTC	2 cut(s)	105, 221
HpyCH4V	TGCA	3 cut(s)	120, 140, 196
HpyF3I	CTNAG	2 cut(s)	257, 394
Hsp92II	CATG	1 cut(s)	86
KflI	GGGWCCC	1 cut(s)	167
Kzo9I	GATC	2 cut(s)	60, 124
LmnI	GCTCC	3 cut(s)	18, 84, 159
LpnPI	CCDG	6 cut(s)	57, 61, 113, 170, 220, 342
MaeI	CTAG	2 cut(s)	50, 369
MaeIII	GTNAC	2 cut(s)	355, 385
MalI	GATC	2 cut(s)	62, 126
MboI	GATC	2 cut(s)	60, 124
MboII	GAAGA	1 cut(s)	310
MfeI	CAATTG	1 cut(s)	360
MhlI	GDGCHC	1 cut(s)	23
MlsI	TGGCCA	1 cut(s)	249
MluCI	AATT	2 cut(s)	345, 360
MluNI	TGGCCA	1 cut(s)	249
MlyI	GAGTC	1 cut(s)	392
MnlI	CCTC	6 cut(s)	101, 109, 144, 297, 326, 376
Mox20I	TGGCCA	1 cut(s)	249
MscI	TGGCCA	1 cut(s)	249
MseI	TTAA	2 cut(s)	162, 403
Msp20I	TGGCCA	1 cut(s)	249
MspI	CCGG	1 cut(s)	157
MspR9I	CCNGG	1 cut(s)	158
MunI	CAATTG	1 cut(s)	360
Mva1269I	GAATGC	1 cut(s)	183
NciI	CCSGG	1 cut(s)	158
NdeII	GATC	2 cut(s)	60, 124
NlaIII	CATG	1 cut(s)	86
NlaIV	GGNNCC	4 cut(s)	80, 155, 168, 169
PctI	GAATGC	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	190
PleI	GAGTC	1 cut(s)	392
PpsI	GAGTC	1 cut(s)	392
PpuMI	RGGWCCY	1 cut(s)	167
Psp124BI	GAGCTC	1 cut(s)	23
Psp5II	RGGWCCY	1 cut(s)	167
PspN4I	GGNNCC	4 cut(s)	80, 155, 168, 169
PspPI	GGNCC	1 cut(s)	167
PspPPI	RGGWCCY	1 cut(s)	167
SacI	GAGCTC	1 cut(s)	23
SaqAI	TTAA	2 cut(s)	162, 403
Sau3AI	GATC	2 cut(s)	60, 124
Sau96I	GGNCC	1 cut(s)	167
SchI	GAGTC	1 cut(s)	392
ScrFI	CCNGG	1 cut(s)	158
SduI	GDGCHC	1 cut(s)	23
SetI	ASST	5 cut(s)	23, 55, 318, 326, 387
SinI	GGWCC	1 cut(s)	167
Sse9I	AATT	2 cut(s)	345, 360
SspMI	CTAG	2 cut(s)	50, 369
SstI	GAGCTC	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	156
TaqI	TCGA	1 cut(s)	59
TasI	AATT	2 cut(s)	345, 360
TfiI	GAWTC	1 cut(s)	190
Tru1I	TTAA	2 cut(s)	162, 403
Tru9I	TTAA	2 cut(s)	162, 403
TscAI	CASTG	1 cut(s)	127
TspGWI	ACGGA	1 cut(s)	343
TspRI	CASTG	1 cut(s)	127
VpaK11BI	GGWCC	1 cut(s)	167
XspI	CTAG	2 cut(s)	50, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.