Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

19841297 .. 19846212

Gene Structure 4916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G265900.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGAACGGAAGATGAGGTTTGGGCTCTTTCATCCGATTGTTTCTCTGCTATTCTTTGTGAACCACACCTTTCCGGTGCCATCGAACCCAAGTCCAATCGCCCATGGTTCGAGGCTAAGAGATATGGACGTGTGTGCTGTTTTGGTGCATTGCTTTGCTGGTGTTTCGAGACGGGTTTGTTGCAGTGCAGCTATCATTACAGCATATCTGATGAGAACAGAACATTTATCACAACAAGAAGCACTAGGATCCCCAAGGCAAAGCTGTGAGTTTGTTTGCCCCAATGATGGTTTTCTAGATCAGCTCAAATTTACGAGGAAATGGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006109 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009893 GO:0009987 GO:0010562 GO:0010675 GO:0010676 GO:0010906 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0031323 GO:0031325 GO:0033131 GO:0033133 GO:0033674 GO:0036211 GO:0042325 GO:0042327 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045913 GO:0045937 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051338 GO:0051347 GO:0062012 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903299 GO:1903301

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

110

Amino Acids

12.34

Weight (kDa)

8.91

Isoelectric Point (pI)

50.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	76
AclWI	GGATC	2 cut(s)	243, 256
AcsI	RAATTY	1 cut(s)	308
AfiI	CCNNNNNNNGG	1 cut(s)	287
AflIII	ACRYGT	1 cut(s)	129
AjiI	CACGTC	1 cut(s)	130
AluBI	AGCT	3 cut(s)	191, 264, 304
AluI	AGCT	3 cut(s)	191, 264, 304
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	2 cut(s)	243, 256
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	1 cut(s)	308
BamHI	GGATCC	1 cut(s)	248
BanI	GGYRCC	1 cut(s)	76
BanII	GRGCYC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	200
BccI	CCATC	2 cut(s)	88, 281
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	2 cut(s)	245, 296
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
BmgBI	CACGTC	1 cut(s)	130
BmiI	GGNNCC	2 cut(s)	78, 250
BsaJI	CCNNGG	2 cut(s)	103, 254
BsaWI	WCCGGW	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
Bse3DI	GCAATG	1 cut(s)	148
BseDI	CCNNGG	2 cut(s)	103, 254
BseGI	GGATG	1 cut(s)	31
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseMI	GCAATG	1 cut(s)	148
BseXI	GCAGC	1 cut(s)	200
BsgI	GTGCAG	1 cut(s)	207
BshNI	GGYRCC	1 cut(s)	76
BsiSI	CCGG	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmAI	GTCTC	1 cut(s)	163
BsmBI	CGTCTC	1 cut(s)	163
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	2 cut(s)	248, 298
Bsp19I	CCATGG	1 cut(s)	103
BspLI	GGNNCC	2 cut(s)	78, 250
BspPI	GGATC	2 cut(s)	243, 256
BspT107I	GGYRCC	1 cut(s)	76
BsrDI	GCAATG	1 cut(s)	148
BssECI	CCNNGG	2 cut(s)	103, 254
BssMI	GATC	2 cut(s)	248, 298
BssT1I	CCWWGG	2 cut(s)	103, 254
BstDEI	CTNAG	1 cut(s)	116
BstDSI	CCRYGG	1 cut(s)	103
BstF5I	GGATG	1 cut(s)	31
BstKTI	GATC	2 cut(s)	251, 301
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	2 cut(s)	248, 298
BstV1I	GCAGC	1 cut(s)	200
BstX2I	RGATCY	1 cut(s)	248
BstYI	RGATCY	1 cut(s)	248
BtgI	CCRYGG	1 cut(s)	103
BtrI	CACGTC	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	31
BtsI	GCAGTG	1 cut(s)	190
BtsIMutI	CAGTG	1 cut(s)	190
CviAII	CATG	1 cut(s)	104
CviJI	RGCY	6 cut(s)	25, 115, 191, 264, 304, 326
CviKI_1	RGCY	6 cut(s)	25, 115, 191, 264, 304, 326
DdeI	CTNAG	1 cut(s)	116
DpnI	GATC	2 cut(s)	250, 300
DpnII	GATC	2 cut(s)	248, 298
Eco130I	CCWWGG	2 cut(s)	103, 254
Eco24I	GRGCYC	1 cut(s)	27
EcoT14I	CCWWGG	2 cut(s)	103, 254
EcoT38I	GRGCYC	1 cut(s)	27
ErhI	CCWWGG	2 cut(s)	103, 254
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	1 cut(s)	107
FaiI	YATR	3 cut(s)	105, 125, 205
FatI	CATG	1 cut(s)	103
Fnu4HI	GCNGC	1 cut(s)	189
FokI	GGATG	1 cut(s)	18
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	2 cut(s)	245, 296
GluI	GCNGC	1 cut(s)	189
HapII	CCGG	1 cut(s)	74
Hin1II	CATG	1 cut(s)	107
HpaII	CCGG	1 cut(s)	74
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	2 cut(s)	36, 210
Hpy188III	TCNNGA	2 cut(s)	168, 296
Hpy8I	GTNNAC	1 cut(s)	61
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	3 cut(s)	148, 183, 188
HpyF3I	CTNAG	1 cut(s)	116
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	1 cut(s)	107
Kzo9I	GATC	2 cut(s)	248, 298
LpnPI	CCDG	2 cut(s)	87, 144
Lsp1109I	GCAGC	1 cut(s)	200
MaeI	CTAG	2 cut(s)	245, 296
MaeII	ACGT	1 cut(s)	129
MalI	GATC	2 cut(s)	250, 300
MboI	GATC	2 cut(s)	248, 298
MboII	GAAGA	1 cut(s)	22
MflI	RGATCY	1 cut(s)	248
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	1 cut(s)	308
MnlI	CCTC	3 cut(s)	9, 105, 309
MseI	TTAA	1 cut(s)	328
MspI	CCGG	1 cut(s)	74
NcoI	CCATGG	1 cut(s)	103
NdeII	GATC	2 cut(s)	248, 298
NlaIII	CATG	1 cut(s)	107
NlaIV	GGNNCC	2 cut(s)	78, 250
PkrI	GCNGC	1 cut(s)	190
PspN4I	GGNNCC	2 cut(s)	78, 250
PsuI	RGATCY	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	328
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	2 cut(s)	248, 298
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	6 cut(s)	20, 71, 132, 193, 266, 306
Sse9I	AATT	1 cut(s)	308
SspMI	CTAG	2 cut(s)	245, 296
StyI	CCWWGG	2 cut(s)	103, 254
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	3 cut(s)	83, 110, 167
TasI	AATT	1 cut(s)	308
Tru1I	TTAA	1 cut(s)	328
Tru9I	TTAA	1 cut(s)	328
TscAI	CASTG	1 cut(s)	190
TseI	GCWGC	1 cut(s)	188
TspDTI	ATGAA	1 cut(s)	20
TspGWI	ACGGA	1 cut(s)	22
TspRI	CASTG	1 cut(s)	190
XapI	RAATTY	1 cut(s)	308
XbaI	TCTAGA	1 cut(s)	295
XspI	CTAG	2 cut(s)	245, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.