Prupe.4G268200_v2.0.a1

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Forward (+)
20294227 .. 20295859
1633 bp
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UTR
Exon/CDS
Intron
Prupe.4G268200.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 288 bp
ATGCCGGATTATGGAGCAAGCTACCACAGGAACTCCTCGAGCGTATTCTCTCTGAGATTGACTTGTAAGCACTTCAAGCGTTTAGTATTCTCTCCCTCTCTGATCTCCAAGGATTCCTCTTCTTCACCCTTCTCTTCTTTCCTCTTGCTTTCTCACCCTCAGTGTTATAACCACTTCGCTCTCTATGACTCTGCACTGATTCTCTCTCTCCAATTCCTTTCTTGTCTTCAATCTTTTGACCAAGTCCTCAAGAATGATCGAATTCCCTGCTTACCCTTTTGCTTTTGA

Protein Analysis

96

Amino Acids

10.85

Weight (kDa)

8.69

Isoelectric Point (pI)

71.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 168
AcsI RAATTY 1 cut(s) 261
AfiI CCNNNNNNNGG 1 cut(s) 11
AgsI TTSAA 2 cut(s) 76, 230
AluBI AGCT 1 cut(s) 21
AluI AGCT 1 cut(s) 21
Ama87I CYCGRG 1 cut(s) 37
ApoI RAATTY 1 cut(s) 261
AsuHPI GGTGA 2 cut(s) 117, 146
AvaI CYCGRG 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 218
BcgI CGANNNNNNTGC 2 cut(s) 249, 283
BmeT110I CYCGRG 1 cut(s) 37
BpiI GAAGAC 1 cut(s) 218
BpuEI CTTGAG 1 cut(s) 233
BsaJI CCNNGG 1 cut(s) 108
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 1 cut(s) 11
BseDI CCNNGG 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 11
BseMII CTCAG 2 cut(s) 44, 173
BseRI GAGGAG 1 cut(s) 25
BsgI GTGCAG 1 cut(s) 177
BsiHKCI CYCGRG 1 cut(s) 37
BsiSI CCGG 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 11
BsoBI CYCGRG 1 cut(s) 37
Bsp143I GATC 2 cut(s) 102, 256
BspCNI CTCAG 2 cut(s) 45, 172
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 2 cut(s) 102, 256
BssT1I CCWWGG 1 cut(s) 108
Bst6I CTCTTC 2 cut(s) 124, 139
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 2 cut(s) 53, 159
BstKTI GATC 2 cut(s) 105, 259
BstMBI GATC 2 cut(s) 102, 256
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstV2I GAAGAC 1 cut(s) 218
BtsIMutI CAGTG 2 cut(s) 167, 194
Cac8I GCNNGC 1 cut(s) 19
CviJI RGCY 1 cut(s) 21
CviKI_1 RGCY 1 cut(s) 21
DdeI CTNAG 2 cut(s) 53, 159
DpnI GATC 2 cut(s) 104, 258
DpnII GATC 2 cut(s) 102, 256
Eam1104I CTCTTC 2 cut(s) 124, 139
EarI CTCTTC 2 cut(s) 124, 139
Eco130I CCWWGG 1 cut(s) 108
Eco88I CYCGRG 1 cut(s) 37
EcoRI GAATTC 1 cut(s) 261
EcoT14I CCWWGG 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 108
FaiI YATR 3 cut(s) 12, 168, 186
HapII CCGG 1 cut(s) 5
HinfI GANTC 3 cut(s) 113, 188, 199
HpaII CCGG 1 cut(s) 5
HphI GGTGA 2 cut(s) 117, 146
Hpy188I TCNGA 2 cut(s) 54, 102
Hpy188III TCNNGA 1 cut(s) 250
HpyAV CCTTC 1 cut(s) 139
HpyCH4V TGCA 1 cut(s) 194
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
HpyF3I CTNAG 2 cut(s) 53, 159
Kzo9I GATC 2 cut(s) 102, 256
LmnI GCTCC 1 cut(s) 14
LpnPI CCDG 3 cut(s) 13, 18, 280
MalI GATC 2 cut(s) 104, 258
MboI GATC 2 cut(s) 102, 256
MboII GAAGA 4 cut(s) 111, 114, 126, 218
MluCI AATT 2 cut(s) 212, 261
MlyI GAGTC 1 cut(s) 182
MnlI CCTC 6 cut(s) 46, 106, 127, 152, 168, 257
MspI CCGG 1 cut(s) 5
MwoI GCNNNNNNNGC 1 cut(s) 76
NdeII GATC 2 cut(s) 102, 256
PaeR7I CTCGAG 1 cut(s) 37
PfeI GAWTC 2 cut(s) 113, 199
PflFI GACNNNGTC 1 cut(s) 242
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
PsiI TTATAA 1 cut(s) 168
PspXI VCTCGAGB 1 cut(s) 37
PsyI GACNNNGTC 1 cut(s) 242
Sau3AI GATC 2 cut(s) 102, 256
SchI GAGTC 1 cut(s) 182
SetI ASST 1 cut(s) 23
Sfr274I CTCGAG 1 cut(s) 37
SlaI CTCGAG 1 cut(s) 37
SmlI CTYRAG 2 cut(s) 37, 248
SmoI CTYRAG 2 cut(s) 37, 248
Sse9I AATT 2 cut(s) 212, 261
StyI CCWWGG 1 cut(s) 108
TaqI TCGA 2 cut(s) 38, 259
TasI AATT 2 cut(s) 212, 261
TfiI GAWTC 2 cut(s) 113, 199
TscAI CASTG 2 cut(s) 167, 201
TspRI CASTG 2 cut(s) 167, 201
Tth111I GACNNNGTC 1 cut(s) 242
XapI RAATTY 1 cut(s) 261
XhoI CTCGAG 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.