Prupe.4G268700_v2.0.a1

Chlorophyll synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Reverse (-)
21208218 .. 21210692
2475 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G268700.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 399 bp
ATGCTGAACTACGAGCTCTCTCCTTGCCGAAGACACAACAAGGAACCTCTAAAAAATTCCCACTCCACACCCTACCGAACTATATGTGCTTCCCAAATCGATCTCACCGAACTGCACAAACCCCAGAATAAATGGAAGATTCGTCTTCAGTTGACAAAGCCTGTAACTTGGCCTCCACTGGTGTGGGGAGTAGTTTGCAGAGCTGCTGCTTCTGAAAATTTTCACTGGACTTTTGAGGACGTTGCCAAATCAATAGTTTGCATGTGTATGTCTGGCCCTTTTCTCACTGGCTATACCCAGACACTAAATGATTGGTATGACCGAGAAATTGATGCAATTAATGAACCATATCTTATGCAATTTAGTACCTTACACTATTTAAGCTTATGTTCATATTAG

Protein Analysis

133

Amino Acids

15.47

Weight (kDa)

7.63

Isoelectric Point (pI)

44.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 55, 217
AcuI CTGAAG 1 cut(s) 131
AfaI GTAC 1 cut(s) 367
AleI CACNNNNGTG 1 cut(s) 181
AluBI AGCT 3 cut(s) 16, 203, 384
AluI AGCT 3 cut(s) 16, 203, 384
Alw21I GWGCWC 1 cut(s) 18
AoxI GGCC 2 cut(s) 170, 274
ApeKI GCWGC 2 cut(s) 203, 206
ApoI RAATTY 2 cut(s) 55, 217
AseI ATTAAT 1 cut(s) 339
Asp700I GAANNNNTTC 1 cut(s) 219
AspS9I GGNCC 1 cut(s) 275
AsuHPI GGTGA 1 cut(s) 97
BanII GRGCYC 1 cut(s) 18
BbsI GAAGAC 2 cut(s) 37, 137
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 2 cut(s) 190, 193
BisI GCNGC 2 cut(s) 204, 207
BlsI GCNGC 2 cut(s) 205, 208
BmgT120I GGNCC 1 cut(s) 275
BmiI GGNNCC 1 cut(s) 45
BmsI GCATC 1 cut(s) 322
BpiI GAAGAC 2 cut(s) 37, 137
Bsa29I ATCGAT 1 cut(s) 99
BsaXI ACNNNNNCTCC 2 cut(s) 157, 187
Bse1I ACTGG 3 cut(s) 183, 230, 292
BseCI ATCGAT 1 cut(s) 99
BseNI ACTGG 3 cut(s) 183, 230, 292
BseXI GCAGC 2 cut(s) 190, 193
BsgI GTGCAG 1 cut(s) 98
BshFI GGCC 2 cut(s) 172, 276
BshVI ATCGAT 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 18
BsnI GGCC 2 cut(s) 172, 276
Bsp1286I GDGCHC 1 cut(s) 18
Bsp143I GATC 1 cut(s) 100
BspANI GGCC 2 cut(s) 172, 276
BspDI ATCGAT 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 45
BsrI ACTGG 3 cut(s) 183, 230, 292
BssMI GATC 1 cut(s) 100
BstKTI GATC 1 cut(s) 103
BstMBI GATC 1 cut(s) 100
BstNSI RCATGY 1 cut(s) 265
BstV1I GCAGC 2 cut(s) 190, 193
BstV2I GAAGAC 2 cut(s) 37, 137
BstXI CCANNNNNNTGG 1 cut(s) 183
Bsu15I ATCGAT 1 cut(s) 99
BsuRI GGCC 2 cut(s) 172, 276
BsuTUI ATCGAT 1 cut(s) 99
BtsIMutI CAGTG 3 cut(s) 176, 223, 285
Cfr13I GGNCC 1 cut(s) 275
ClaI ATCGAT 1 cut(s) 99
Csp6I GTAC 1 cut(s) 366
CviAII CATG 1 cut(s) 262
CviJI RGCY 7 cut(s) 16, 160, 172, 203, 276, 291, 384
CviKI_1 RGCY 7 cut(s) 16, 160, 172, 203, 276, 291, 384
CviQI GTAC 1 cut(s) 366
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
Ecl136II GAGCTC 1 cut(s) 16
Eco24I GRGCYC 1 cut(s) 18
Eco53kI GAGCTC 1 cut(s) 16
Eco57I CTGAAG 1 cut(s) 131
EcoICRI GAGCTC 1 cut(s) 16
EcoT38I GRGCYC 1 cut(s) 18
FaeI CATG 1 cut(s) 265
FatI CATG 1 cut(s) 261
Fnu4HI GCNGC 2 cut(s) 204, 207
FriOI GRGCYC 1 cut(s) 18
Fsp4HI GCNGC 2 cut(s) 204, 207
GluI GCNGC 2 cut(s) 204, 207
HaeIII GGCC 2 cut(s) 172, 276
Hin1II CATG 1 cut(s) 265
HincII GTYRAC 1 cut(s) 153
HindII GTYRAC 1 cut(s) 153
HindIII AAGCTT 1 cut(s) 382
HinfI GANTC 1 cut(s) 139
HphI GGTGA 1 cut(s) 97
Hpy166II GTNNAC 1 cut(s) 153
Hpy188I TCNGA 1 cut(s) 214
Hpy8I GTNNAC 1 cut(s) 153
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 5 cut(s) 115, 198, 261, 335, 358
HpySE526I ACGT 1 cut(s) 240
Hsp92II CATG 1 cut(s) 265
Kzo9I GATC 1 cut(s) 100
LpnPI CCDG 7 cut(s) 137, 164, 174, 211, 258, 273, 311
Lsp1109I GCAGC 2 cut(s) 190, 193
LweI GCATC 1 cut(s) 322
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 1 cut(s) 163
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 3 cut(s) 42, 137, 148
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 5 cut(s) 55, 217, 327, 336, 359
MnlI CCTC 3 cut(s) 57, 183, 229
MroXI GAANNNNTTC 1 cut(s) 219
MseI TTAA 2 cut(s) 339, 380
MslI CAYNNNNRTG 2 cut(s) 181, 266
NdeII GATC 1 cut(s) 100
NlaIII CATG 1 cut(s) 265
NlaIV GGNNCC 1 cut(s) 45
NspI RCATGY 1 cut(s) 265
OliI CACNNNNGTG 1 cut(s) 181
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 219
PfeI GAWTC 1 cut(s) 139
PkrI GCNGC 2 cut(s) 205, 208
PshBI ATTAAT 1 cut(s) 339
Psp124BI GAGCTC 1 cut(s) 18
PspN4I GGNNCC 1 cut(s) 45
PspPI GGNCC 1 cut(s) 275
RsaI GTAC 1 cut(s) 367
RsaNI GTAC 1 cut(s) 366
RseI CAYNNNNRTG 2 cut(s) 181, 266
SacI GAGCTC 1 cut(s) 18
SaqAI TTAA 2 cut(s) 339, 380
SatI GCNGC 2 cut(s) 204, 207
Sau3AI GATC 1 cut(s) 100
Sau96I GGNCC 1 cut(s) 275
SduI GDGCHC 1 cut(s) 18
SetI ASST 6 cut(s) 18, 49, 205, 243, 371, 386
SfaNI GCATC 1 cut(s) 322
SmiMI CAYNNNNRTG 2 cut(s) 181, 266
Sse9I AATT 5 cut(s) 55, 217, 327, 336, 359
SstI GAGCTC 1 cut(s) 18
TaiI ACGT 1 cut(s) 243
TaqI TCGA 1 cut(s) 99
TaqII GACCGA 1 cut(s) 336
TasI AATT 5 cut(s) 55, 217, 327, 336, 359
TfiI GAWTC 1 cut(s) 139
Tru1I TTAA 2 cut(s) 339, 380
Tru9I TTAA 2 cut(s) 339, 380
TscAI CASTG 3 cut(s) 183, 230, 292
TseI GCWGC 2 cut(s) 203, 206
TspDTI ATGAA 2 cut(s) 357, 381
TspRI CASTG 3 cut(s) 183, 230, 292
VspI ATTAAT 1 cut(s) 339
XapI RAATTY 2 cut(s) 55, 217
XceI RCATGY 1 cut(s) 265
XmnI GAANNNNTTC 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.