Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

22166073 .. 22167786

Gene Structure 1714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G271500.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGACAGGATGCATTTTTGCACCGTATTTCATGCATGAAGAGGCTGTTACGGATTTCTCCTCCATCTGCAATGTCTTTGGCGCAAACAAAATGTCAAAGATTCTATCTCAGCTTCCAATGAGTGAGCGCTCCGTTACGTCATGGACGATGGCAGTTGAAGCTCATGCCAGGGATATCGATCCCATATATGGCTGTATTTCCTATATTTTACATCTCCAACAACAGGTGCGCAACATACAAGCACAGTTGGATGAAGCGCACGTACAGTTAGCTCGTGCAGTTGCTCCTGTTGCAAACCCTAATCAAGATCTGGAAAATAGTAACGAGCAATCTGAAGTGGCAAACCCAACTGAGCAAGCTGCAGTGGCAAAACCTACTGAGTTTGAAAGTTTACCACAATTCAGTTTAACCCATACAAATAATGGCGACCAACGGTGTTTGTCGCCAATTGTGTTTTTTCTTGTAGTGATTCTTGATCAACCGAGTGGTCAAACTTTCCAAATTCGGAAGACTCTCCATGTTTGGACAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0022622 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

178

Amino Acids

19.73

Weight (kDa)

5.08

Isoelectric Point (pI)

51.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	230
AclWI	GGATC	1 cut(s)	173
AcsI	RAATTY	1 cut(s)	501
AcuI	CTGAAG	1 cut(s)	354
AfaI	GTAC	1 cut(s)	264
AfeI	AGCGCT	1 cut(s)	128
AfiI	CCNNNNNNNGG	2 cut(s)	188, 223
AgsI	TTSAA	2 cut(s)	158, 386
AjnI	CCWGG	1 cut(s)	167
AluBI	AGCT	5 cut(s)	112, 161, 272, 359, 530
AluI	AGCT	5 cut(s)	112, 161, 272, 359, 530
AlwI	GGATC	1 cut(s)	173
Aor51HI	AGCGCT	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	359
ApoI	RAATTY	1 cut(s)	501
ArsI	GACNNNNNNTTYG	2 cut(s)	77, 109
AspLEI	GCGC	4 cut(s)	83, 129, 231, 259
BarI	GAAGNNNNNNTAC	2 cut(s)	246, 278
BauI	CACGAG	1 cut(s)	273
BbsI	GAAGAC	1 cut(s)	515
BbvI	GCAGC	1 cut(s)	346
BccI	CCATC	2 cut(s)	71, 142
BciT130I	CCWGG	1 cut(s)	169
BclI	TGATCA	1 cut(s)	475
BfmI	CTRYAG	1 cut(s)	360
BfoI	RGCGCY	1 cut(s)	130
BglII	AGATCT	1 cut(s)	307
BisI	GCNGC	1 cut(s)	360
BlsI	GCNGC	1 cut(s)	361
Bme1390I	CCNGG	1 cut(s)	169
BmrFI	CCNGG	1 cut(s)	169
BpiI	GAAGAC	1 cut(s)	515
Bsa29I	ATCGAT	1 cut(s)	177
BsaAI	YACGTR	1 cut(s)	262
BsaBI	GATNNNNATC	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	2 cut(s)	188, 223
Bse3DI	GCAATG	1 cut(s)	76
Bse8I	GATNNNNATC	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	169
BseCI	ATCGAT	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	168
BseGI	GGATG	2 cut(s)	14, 256
BseJI	GATNNNNATC	1 cut(s)	177
BseLI	CCNNNNNNNGG	2 cut(s)	188, 223
BseMI	GCAATG	1 cut(s)	76
BseMII	CTCAG	3 cut(s)	122, 342, 369
BseRI	GAGGAG	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	346
BsgI	GTGCAG	1 cut(s)	297
BshVI	ATCGAT	1 cut(s)	177
BslI	CCNNNNNNNGG	2 cut(s)	188, 223
Bsp143I	GATC	3 cut(s)	178, 307, 475
BspCNI	CTCAG	3 cut(s)	121, 343, 370
BspDI	ATCGAT	1 cut(s)	177
BspMAI	CTGCAG	1 cut(s)	364
BspPI	GGATC	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	3 cut(s)	178, 307, 475
BssSI	CACGAG	1 cut(s)	273
Bst2BI	CACGAG	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	169
Bst4CI	ACNGT	4 cut(s)	24, 246, 267, 435
Bst6I	CTCTTC	1 cut(s)	33
BstBAI	YACGTR	1 cut(s)	262
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	3 cut(s)	108, 351, 378
BstF5I	GGATG	2 cut(s)	14, 256
BstH2I	RGCGCY	1 cut(s)	130
BstHHI	GCGC	4 cut(s)	83, 129, 231, 259
BstKTI	GATC	3 cut(s)	181, 310, 478
BstMBI	GATC	3 cut(s)	178, 307, 475
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 290, 365
BstNI	CCWGG	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	167
BstSFI	CTRYAG	1 cut(s)	360
BstV1I	GCAGC	1 cut(s)	346
BstV2I	GAAGAC	1 cut(s)	515
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
Bsu15I	ATCGAT	1 cut(s)	177
BsuTUI	ATCGAT	1 cut(s)	177
BtsCI	GGATG	2 cut(s)	14, 256
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	1 cut(s)	369
Cac8I	GCNNGC	1 cut(s)	357
CfoI	GCGC	4 cut(s)	83, 129, 231, 259
ClaI	ATCGAT	1 cut(s)	177
Csp6I	GTAC	1 cut(s)	263
CviAII	CATG	5 cut(s)	31, 35, 141, 164, 518
CviJI	RGCY	7 cut(s)	44, 112, 161, 192, 272, 359, 530
CviKI_1	RGCY	7 cut(s)	44, 112, 161, 192, 272, 359, 530
CviQI	GTAC	1 cut(s)	263
DdeI	CTNAG	3 cut(s)	108, 351, 378
DpnI	GATC	3 cut(s)	180, 309, 477
DpnII	GATC	3 cut(s)	178, 307, 475
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Eco32I	GATATC	1 cut(s)	175
Eco47III	AGCGCT	1 cut(s)	128
Eco57I	CTGAAG	1 cut(s)	354
EcoRII	CCWGG	1 cut(s)	167
EcoRV	GATATC	1 cut(s)	175
EcoT22I	ATGCAT	2 cut(s)	14, 36
FaeI	CATG	5 cut(s)	34, 38, 144, 167, 521
FatI	CATG	5 cut(s)	30, 34, 140, 163, 517
FbaI	TGATCA	1 cut(s)	475
Fnu4HI	GCNGC	1 cut(s)	360
FokI	GGATG	2 cut(s)	21, 263
Fsp4HI	GCNGC	1 cut(s)	360
FspI	TGCGCA	1 cut(s)	230
GlaI	GCGC	4 cut(s)	82, 128, 230, 258
GluI	GCNGC	1 cut(s)	360
HaeII	RGCGCY	1 cut(s)	130
HhaI	GCGC	4 cut(s)	83, 129, 231, 259
Hin1II	CATG	5 cut(s)	34, 38, 144, 167, 521
Hin6I	GCGC	4 cut(s)	81, 127, 229, 257
HinP1I	GCGC	4 cut(s)	81, 127, 229, 257
HinfI	GANTC	3 cut(s)	100, 469, 511
Hpy166II	GTNNAC	1 cut(s)	392
Hpy188I	TCNGA	2 cut(s)	334, 507
Hpy188III	TCNNGA	3 cut(s)	305, 311, 473
Hpy8I	GTNNAC	1 cut(s)	392
HpyCH4III	ACNGT	4 cut(s)	24, 246, 267, 435
HpyCH4IV	ACGT	2 cut(s)	137, 261
HpyCH4V	TGCA	7 cut(s)	12, 20, 34, 69, 278, 293, 362
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 290, 365
HpyF3I	CTNAG	3 cut(s)	108, 351, 378
HpySE526I	ACGT	2 cut(s)	137, 261
Hsp92II	CATG	5 cut(s)	34, 38, 144, 167, 521
HspAI	GCGC	4 cut(s)	81, 127, 229, 257
Ksp22I	TGATCA	1 cut(s)	475
Kzo9I	GATC	3 cut(s)	178, 307, 475
LmnI	GCTCC	2 cut(s)	134, 289
LpnPI	CCDG	5 cut(s)	154, 181, 209, 296, 300
Lsp1109I	GCAGC	1 cut(s)	346
MaeII	ACGT	2 cut(s)	137, 261
MaeIII	GTNAC	3 cut(s)	46, 133, 320
MalI	GATC	3 cut(s)	180, 309, 477
MboI	GATC	3 cut(s)	178, 307, 475
MboII	GAAGA	2 cut(s)	50, 520
MfeI	CAATTG	1 cut(s)	447
MflI	RGATCY	1 cut(s)	307
MluCI	AATT	3 cut(s)	398, 447, 501
MlyI	GAGTC	1 cut(s)	505
MmeI	TCCRAC	2 cut(s)	228, 241
MnlI	CCTC	2 cut(s)	34, 70
Mph1103I	ATGCAT	2 cut(s)	14, 36
MseI	TTAA	2 cut(s)	407, 532
MspR9I	CCNGG	1 cut(s)	169
MunI	CAATTG	1 cut(s)	447
MvaI	CCWGG	1 cut(s)	169
MwoI	GCNNNNNNNGC	3 cut(s)	158, 290, 365
NdeII	GATC	3 cut(s)	178, 307, 475
NlaIII	CATG	5 cut(s)	34, 38, 144, 167, 521
NsbI	TGCGCA	1 cut(s)	230
NsiI	ATGCAT	2 cut(s)	14, 36
PcsI	WCGNNNNNNNCGW	1 cut(s)	143
PfeI	GAWTC	2 cut(s)	100, 469
PkrI	GCNGC	1 cut(s)	361
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
Ppu21I	YACGTR	1 cut(s)	262
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
PstI	CTGCAG	1 cut(s)	364
PsuI	RGATCY	1 cut(s)	307
RsaI	GTAC	1 cut(s)	264
RsaNI	GTAC	1 cut(s)	263
SaqAI	TTAA	2 cut(s)	407, 532
SatI	GCNGC	1 cut(s)	360
Sau3AI	GATC	3 cut(s)	178, 307, 475
SchI	GAGTC	1 cut(s)	505
ScrFI	CCNGG	1 cut(s)	169
SetI	ASST	9 cut(s)	114, 140, 163, 228, 264, 274, 361, 376, 532
SfcI	CTRYAG	1 cut(s)	360
Sse9I	AATT	3 cut(s)	398, 447, 501
StyD4I	CCNGG	1 cut(s)	167
TaaI	ACNGT	4 cut(s)	24, 246, 267, 435
TaiI	ACGT	2 cut(s)	140, 264
TaqI	TCGA	1 cut(s)	177
TasI	AATT	3 cut(s)	398, 447, 501
TfiI	GAWTC	2 cut(s)	100, 469
Tru1I	TTAA	2 cut(s)	407, 532
Tru9I	TTAA	2 cut(s)	407, 532
TscAI	CASTG	1 cut(s)	369
TseI	GCWGC	1 cut(s)	359
TspDTI	ATGAA	3 cut(s)	19, 51, 267
TspGWI	ACGGA	2 cut(s)	65, 121
TspRI	CASTG	1 cut(s)	369
XapI	RAATTY	1 cut(s)	501
XcmI	CCANNNNNNNNNTGG	1 cut(s)	419
Zsp2I	ATGCAT	2 cut(s)	14, 36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.