Prupe.4G274800_v2.0.a1

NAD-specific glutamate dehydrogenase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Reverse (-)
22913078 .. 22916536
3459 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G274800.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 342 bp
ATGTCACTTTCTAGATTGGCATCTGCTGAGTTTTCTTGGAATCGAGAGGCTTTGGAGCTGCTACTTGGCGGAGACATTGAAGATACCATTGTCATCAATATAAAAGGAAATATTGGCTCTAGCAACACCTTGGGGACATGGAGGAAAGTTATCCAAGATGAGTTCGCCCAAAAAGTAATTATCCGCAGTCGTTGCACTCTCACCTTCATAAATGGCGACTCTGCCGCTACATTGGTTATCAAAGATGGTGGTGGAGATATGATTCACTATGATGGGAATTCCAGAGTTTCTGAGAATAAAAACTCCCATGGAACCTTCTTTGCCATTCACTATGCCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

114

Amino Acids

12.42

Weight (kDa)

6.27

Isoelectric Point (pI)

55.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 69, 184, 225
AcsI RAATTY 1 cut(s) 277
AgsI TTSAA 1 cut(s) 80
AluBI AGCT 1 cut(s) 58
AluI AGCT 1 cut(s) 58
Alw26I GTCTC 1 cut(s) 66
ApeKI GCWGC 1 cut(s) 58
ApoI RAATTY 1 cut(s) 277
AsuHPI GGTGA 1 cut(s) 193
BaeI ACNNNNGTAYC 2 cut(s) 75, 108
BbvI GCAGC 1 cut(s) 45
BccI CCATC 2 cut(s) 239, 266
BcoDI GTCTC 1 cut(s) 66
BfaI CTAG 2 cut(s) 12, 120
BisI GCNGC 2 cut(s) 59, 225
BlsI GCNGC 2 cut(s) 60, 226
BmiI GGNNCC 1 cut(s) 313
BmsI GCATC 1 cut(s) 29
BsaBI GATNNNNATC 1 cut(s) 19
BsaJI CCNNGG 2 cut(s) 129, 307
Bse8I GATNNNNATC 1 cut(s) 19
BseDI CCNNGG 2 cut(s) 129, 307
BseJI GATNNNNATC 1 cut(s) 19
BseMII CTCAG 2 cut(s) 18, 282
BseXI GCAGC 1 cut(s) 45
BslFI GGGAC 1 cut(s) 148
BsmAI GTCTC 1 cut(s) 66
BsmFI GGGAC 1 cut(s) 148
Bsp19I CCATGG 1 cut(s) 307
BspACI CCGC 3 cut(s) 69, 184, 225
BspCNI CTCAG 2 cut(s) 19, 283
BspLI GGNNCC 1 cut(s) 313
BssECI CCNNGG 2 cut(s) 129, 307
BssT1I CCWWGG 2 cut(s) 129, 307
BstAPI GCANNNNNTGC 1 cut(s) 192
BstDEI CTNAG 2 cut(s) 27, 291
BstDSI CCRYGG 1 cut(s) 307
BstMAI GTCTC 1 cut(s) 66
BstMWI GCNNNNNNNGC 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 45
BtgI CCRYGG 1 cut(s) 307
CspCI CAANNNNNGTGG 2 cut(s) 229, 264
CviAII CATG 2 cut(s) 138, 308
CviJI RGCY 3 cut(s) 50, 58, 117
CviKI_1 RGCY 3 cut(s) 50, 58, 117
DdeI CTNAG 2 cut(s) 27, 291
EciI GGCGGA 1 cut(s) 84
Eco130I CCWWGG 2 cut(s) 129, 307
EcoRI GAATTC 1 cut(s) 277
EcoT14I CCWWGG 2 cut(s) 129, 307
ErhI CCWWGG 2 cut(s) 129, 307
FaeI CATG 2 cut(s) 141, 311
FaiI YATR 7 cut(s) 101, 139, 209, 260, 270, 309, 333
FaqI GGGAC 1 cut(s) 148
FatI CATG 2 cut(s) 137, 307
Fnu4HI GCNGC 2 cut(s) 59, 225
Fsp4HI GCNGC 2 cut(s) 59, 225
FspBI CTAG 2 cut(s) 12, 120
GluI GCNGC 2 cut(s) 59, 225
Hin1II CATG 2 cut(s) 141, 311
HinfI GANTC 3 cut(s) 40, 218, 262
HphI GGTGA 1 cut(s) 193
Hpy188I TCNGA 1 cut(s) 292
Hpy188III TCNNGA 3 cut(s) 12, 44, 282
HpyAV CCTTC 2 cut(s) 214, 325
HpyCH4V TGCA 1 cut(s) 195
HpyF10VI GCNNNNNNNGC 1 cut(s) 192
HpyF3I CTNAG 2 cut(s) 27, 291
Hsp92II CATG 2 cut(s) 141, 311
LmnI GCTCC 1 cut(s) 55
LpnPI CCDG 1 cut(s) 295
Lsp1109I GCAGC 1 cut(s) 45
LweI GCATC 1 cut(s) 29
MaeI CTAG 2 cut(s) 12, 120
MaeIII GTNAC 1 cut(s) 3
MboII GAAGA 1 cut(s) 92
MluCI AATT 2 cut(s) 177, 277
MlyI GAGTC 1 cut(s) 212
MnlI CCTC 2 cut(s) 40, 135
MslI CAYNNNNRTG 1 cut(s) 270
MwoI GCNNNNNNNGC 1 cut(s) 192
NcoI CCATGG 1 cut(s) 307
NlaIII CATG 2 cut(s) 141, 311
NlaIV GGNNCC 1 cut(s) 313
NmuCI GTSAC 1 cut(s) 3
PfeI GAWTC 2 cut(s) 40, 262
PkrI GCNGC 2 cut(s) 60, 226
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
PspN4I GGNNCC 1 cut(s) 313
RseI CAYNNNNRTG 1 cut(s) 270
SatI GCNGC 2 cut(s) 59, 225
SchI GAGTC 1 cut(s) 212
SetI ASST 4 cut(s) 60, 131, 206, 317
SfaNI GCATC 1 cut(s) 29
SmiMI CAYNNNNRTG 1 cut(s) 270
Sse9I AATT 2 cut(s) 177, 277
SsiI CCGC 3 cut(s) 69, 184, 225
SspI AATATT 1 cut(s) 112
SspMI CTAG 2 cut(s) 12, 120
StyI CCWWGG 2 cut(s) 129, 307
TaqI TCGA 1 cut(s) 43
TasI AATT 2 cut(s) 177, 277
TauI GCSGC 1 cut(s) 227
TfiI GAWTC 2 cut(s) 40, 262
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 1 cut(s) 58
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 1 cut(s) 196
XapI RAATTY 1 cut(s) 277
XbaI TCTAGA 1 cut(s) 11
XspI CTAG 2 cut(s) 12, 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.