Prupe.4G278100_v2.0.a1

WD40 repeats

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Reverse (-)
23276130 .. 23278496
2367 bp
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UTR
Exon/CDS
Intron
Prupe.4G278100.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 201 bp
ATGTTCGACTTTCTCCCCTCCAAGGAAGATTCAGAGGTTCTAGTGGTGCTACAAATGAAGTGGTGCTCTATTTTGAAAATATCAATTCTCAAGCAGCAAACAGTAAAAGGTCTAGATGCAGCATTTATTGGACCCAATGAAAATCAATTTGCAGTTCTTTATGATGATAAGATTGGACTGGTTTTTATATATTTTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

67

Amino Acids

7.53

Weight (kDa)

4.72

Isoelectric Point (pI)

35.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 22
AgsI TTSAA 1 cut(s) 76
Alw21I GWGCWC 1 cut(s) 68
ApeKI GCWGC 2 cut(s) 94, 119
AspS9I GGNCC 1 cut(s) 131
AvaII GGWCC 1 cut(s) 131
Bbv12I GWGCWC 1 cut(s) 68
BbvI GCAGC 2 cut(s) 106, 131
BfaI CTAG 2 cut(s) 41, 113
BisI GCNGC 2 cut(s) 95, 120
BlsI GCNGC 2 cut(s) 96, 121
Bme18I GGWCC 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 133
BmsI GCATC 1 cut(s) 106
BpuEI CTTGAG 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 21
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse1I ACTGG 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 21
BseLI CCNNNNNNNGG 1 cut(s) 22
BseNI ACTGG 1 cut(s) 183
BseXI GCAGC 2 cut(s) 106, 131
BsiHKAI GWGCWC 1 cut(s) 68
BslI CCNNNNNNNGG 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 68
BspLI GGNNCC 1 cut(s) 133
BsrI ACTGG 1 cut(s) 183
BssECI CCNNGG 1 cut(s) 21
BssT1I CCWWGG 1 cut(s) 21
Bst4CI ACNGT 1 cut(s) 103
BstV1I GCAGC 2 cut(s) 106, 131
Cfr13I GGNCC 1 cut(s) 131
CspCI CAANNNNNGTGG 2 cut(s) 41, 76
Eco130I CCWWGG 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 131
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
FaiI YATR 3 cut(s) 162, 188, 190
Fnu4HI GCNGC 2 cut(s) 95, 120
Fsp4HI GCNGC 2 cut(s) 95, 120
FspBI CTAG 2 cut(s) 41, 113
GluI GCNGC 2 cut(s) 95, 120
HinfI GANTC 1 cut(s) 29
Hpy188I TCNGA 1 cut(s) 34
Hpy188III TCNNGA 1 cut(s) 113
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4V TGCA 2 cut(s) 119, 152
LpnPI CCDG 1 cut(s) 164
Lsp1109I GCAGC 2 cut(s) 106, 131
LweI GCATC 1 cut(s) 106
MaeI CTAG 2 cut(s) 41, 113
MboII GAAGA 1 cut(s) 38
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 2 cut(s) 84, 146
MnlI CCTC 2 cut(s) 28, 28
NlaIV GGNNCC 1 cut(s) 133
PfeI GAWTC 1 cut(s) 29
PkrI GCNGC 2 cut(s) 96, 121
PspN4I GGNNCC 1 cut(s) 133
PspPI GGNCC 1 cut(s) 131
SatI GCNGC 2 cut(s) 95, 120
Sau96I GGNCC 1 cut(s) 131
SduI GDGCHC 1 cut(s) 68
SetI ASST 2 cut(s) 39, 112
SfaNI GCATC 1 cut(s) 106
SgeI CNNG 5 cut(s) 34, 53, 103, 125, 191
SinI GGWCC 1 cut(s) 131
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 2 cut(s) 84, 146
SspMI CTAG 2 cut(s) 41, 113
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 1 cut(s) 103
TaqI TCGA 1 cut(s) 6
TasI AATT 2 cut(s) 84, 146
TfiI GAWTC 1 cut(s) 29
TseI GCWGC 2 cut(s) 94, 119
TspDTI ATGAA 2 cut(s) 71, 153
VpaK11BI GGWCC 1 cut(s) 131
XbaI TCTAGA 1 cut(s) 112
XspI CTAG 2 cut(s) 41, 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.