Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

23776124 .. 23778869

Gene Structure 2746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G280900.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGGCAATGGGCAATGGGCAATGGGCATTGGAATGTGTGGGTGTTGGTTTCATTTCTGTTGGGAGGAAGGAAGAAGCAAACTCAGCAGAGCAGCTGTCTGGGTTGCAACTGAAAATCATCTTCGAAATAATATCTTCAACATACAAGGATGCCCAATTATGTATTTTACATCTTTGGGTGACAACCTGCTAATGTATGATGGGGATAGAACAGAGGACACCATTAACTTTCTTCAGAATAATCGGTATAAGATTTCCAAACCAGACTCAGTAAAGGATGAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000322 GO:0000323 GO:0000325 GO:0000326 GO:0000327 GO:0003006 GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0005794 GO:0005886 GO:0006457 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009505 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009960 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010109 GO:0010154 GO:0010205 GO:0010941 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0019222 GO:0022414 GO:0030312 GO:0031090 GO:0031323 GO:0031324 GO:0031974 GO:0032501 GO:0032502 GO:0033554 GO:0034975 GO:0034976 GO:0042221 GO:0042548 GO:0043067 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043467 GO:0044422 GO:0044424 GO:0044432 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070013 GO:0071944 GO:0098588 GO:0098805 GO:0140096 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

96

Amino Acids

10.97

Weight (kDa)

5.54

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	195
AcuI	CTGAAG	1 cut(s)	218
AgsI	TTSAA	1 cut(s)	139
AluBI	AGCT	1 cut(s)	95
AluI	AGCT	1 cut(s)	95
ApeKI	GCWGC	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	191
AsuII	TTCGAA	1 cut(s)	124
BbvI	GCAGC	1 cut(s)	104
BccI	CCATC	1 cut(s)	194
BfuAI	ACCTGC	1 cut(s)	195
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
BmsI	GCATC	1 cut(s)	140
Bpu14I	TTCGAA	1 cut(s)	124
Bse3DI	GCAATG	3 cut(s)	13, 20, 27
BseGI	GGATG	2 cut(s)	155, 283
BseMI	GCAATG	3 cut(s)	13, 20, 27
BseMII	CTCAG	2 cut(s)	97, 282
BseXI	GCAGC	1 cut(s)	104
Bsp119I	TTCGAA	1 cut(s)	124
BspCNI	CTCAG	2 cut(s)	96, 281
BspMI	ACCTGC	1 cut(s)	195
BspT104I	TTCGAA	1 cut(s)	124
BsrDI	GCAATG	3 cut(s)	13, 20, 27
BstBI	TTCGAA	1 cut(s)	124
BstDEI	CTNAG	2 cut(s)	83, 268
BstF5I	GGATG	2 cut(s)	155, 283
BstMWI	GCNNNNNNNGC	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	104
BtsCI	GGATG	2 cut(s)	155, 283
BveI	ACCTGC	1 cut(s)	195
CviJI	RGCY	1 cut(s)	95
CviKI_1	RGCY	1 cut(s)	95
DdeI	CTNAG	2 cut(s)	83, 268
Eco57I	CTGAAG	1 cut(s)	218
FaiI	YATR	5 cut(s)	143, 161, 198, 249, 286
Fnu4HI	GCNGC	1 cut(s)	93
FokI	GGATG	1 cut(s)	162
Fsp4HI	GCNGC	1 cut(s)	93
GluI	GCNGC	1 cut(s)	93
HinfI	GANTC	1 cut(s)	266
HphI	GGTGA	1 cut(s)	191
Hpy188I	TCNGA	1 cut(s)	237
HpyAV	CCTTC	1 cut(s)	62
HpyCH4V	TGCA	1 cut(s)	107
HpyF10VI	GCNNNNNNNGC	1 cut(s)	84
HpyF3I	CTNAG	2 cut(s)	83, 268
LpnPI	CCDG	3 cut(s)	85, 200, 276
Lsp1109I	GCAGC	1 cut(s)	104
LweI	GCATC	1 cut(s)	140
MaeIII	GTNAC	1 cut(s)	179
MboII	GAAGA	4 cut(s)	84, 113, 127, 224
MluCI	AATT	1 cut(s)	156
MlyI	GAGTC	1 cut(s)	260
MnlI	CCTC	2 cut(s)	58, 208
MseI	TTAA	1 cut(s)	225
MslI	CAYNNNNRTG	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	95
MwoI	GCNNNNNNNGC	1 cut(s)	84
NmuCI	GTSAC	1 cut(s)	179
NspV	TTCGAA	1 cut(s)	124
PkrI	GCNGC	1 cut(s)	94
PleI	GAGTC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	260
PvuII	CAGCTG	1 cut(s)	95
RseI	CAYNNNNRTG	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	1 cut(s)	93
SchI	GAGTC	1 cut(s)	260
SetI	ASST	2 cut(s)	97, 189
SfaNI	GCATC	1 cut(s)	140
SfuI	TTCGAA	1 cut(s)	124
SgeI	CNNG	4 cut(s)	112, 158, 199, 275
SmiMI	CAYNNNNRTG	1 cut(s)	32
Sse9I	AATT	1 cut(s)	156
TaqI	TCGA	1 cut(s)	124
TasI	AATT	1 cut(s)	156
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	1 cut(s)	92
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.