Prupe.4G282800_v2.0.a1

beta-mannosidase activity

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Forward (+)
24191120 .. 24192353
1234 bp
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UTR
Exon/CDS
Intron
Prupe.4G282800.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 336 bp
ATGAAGAGGGATTTTAATATGGAAAATATCGTGTGGAGGCAAATGGCAAAACTGGAGTTAGGAAAAGAGGAAGACGGAAATACAAGGATGTTTCACAAGTTGGTAAATGAGAGGAAGAAGAGAAAAATGATAGAGAGATTGGGATTGGGTGATGGGACCATAATAGAGGATGATGGAAGGATTGAGGAAAAACTAATTGTCTTTTCAAAAATATTATTCAAAAGAAAATGGTTTAAGGCTGAGTTTGGAGGGTTTGGATTGGAAGCCTATAATGTAGTTAATAAGAAGAGCAGTTTTCGAGTGCTGCCCTTGTATCAACATTTTTGGGGATCTTAA

Protein Analysis

112

Amino Acids

13.24

Weight (kDa)

9.77

Isoelectric Point (pI)

47.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 207, 220
ApeKI GCWGC 1 cut(s) 304
AspS9I GGNCC 1 cut(s) 156
AsuHPI GGTGA 1 cut(s) 161
AvaII GGWCC 1 cut(s) 156
BbsI GAAGAC 1 cut(s) 78
BbvI GCAGC 1 cut(s) 291
BccI CCATC 2 cut(s) 146, 167
BisI GCNGC 1 cut(s) 305
BlsI GCNGC 1 cut(s) 306
Bme18I GGWCC 1 cut(s) 156
BmgT120I GGNCC 1 cut(s) 156
BmiI GGNNCC 1 cut(s) 157
BpiI GAAGAC 1 cut(s) 78
BpmI CTGGAG 1 cut(s) 74
Bse1I ACTGG 1 cut(s) 57
BseGI GGATG 2 cut(s) 93, 175
BseMII CTCAG 1 cut(s) 231
BseNI ACTGG 1 cut(s) 57
BseXI GCAGC 1 cut(s) 291
BslFI GGGAC 1 cut(s) 169
BsmFI GGGAC 1 cut(s) 169
Bsp143I GATC 1 cut(s) 329
BspCNI CTCAG 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 157
BspQI GCTCTTC 1 cut(s) 281
BsrI ACTGG 1 cut(s) 57
BssMI GATC 1 cut(s) 329
Bst6I CTCTTC 2 cut(s) 113, 281
BstDEI CTNAG 1 cut(s) 240
BstF5I GGATG 2 cut(s) 93, 175
BstKTI GATC 1 cut(s) 332
BstMBI GATC 1 cut(s) 329
BstV1I GCAGC 1 cut(s) 291
BstV2I GAAGAC 1 cut(s) 78
BstX2I RGATCY 1 cut(s) 329
BstYI RGATCY 1 cut(s) 329
BtsCI GGATG 2 cut(s) 93, 175
Cfr13I GGNCC 1 cut(s) 156
CviJI RGCY 2 cut(s) 239, 266
CviKI_1 RGCY 2 cut(s) 239, 266
DdeI CTNAG 1 cut(s) 240
DpnI GATC 1 cut(s) 331
DpnII GATC 1 cut(s) 329
Eam1104I CTCTTC 2 cut(s) 113, 281
EarI CTCTTC 2 cut(s) 113, 281
Eco47I GGWCC 1 cut(s) 156
FaiI YATR 3 cut(s) 20, 161, 270
FaqI GGGAC 1 cut(s) 169
Fnu4HI GCNGC 1 cut(s) 305
FokI GGATG 2 cut(s) 100, 182
Fsp4HI GCNGC 1 cut(s) 305
GluI GCNGC 1 cut(s) 305
GsuI CTGGAG 1 cut(s) 74
HphI GGTGA 1 cut(s) 161
HpyAV CCTTC 1 cut(s) 171
HpyF3I CTNAG 1 cut(s) 240
Kzo9I GATC 1 cut(s) 329
LguI GCTCTTC 1 cut(s) 281
LpnPI CCDG 1 cut(s) 38
Lsp1109I GCAGC 1 cut(s) 291
MalI GATC 1 cut(s) 331
MboI GATC 1 cut(s) 329
MboII GAAGA 5 cut(s) 16, 83, 127, 130, 298
MflI RGATCY 1 cut(s) 329
MluCI AATT 1 cut(s) 195
MnlI CCTC 6 cut(s) 30, 61, 105, 160, 178, 242
MseI TTAA 4 cut(s) 15, 234, 279, 334
NdeII GATC 1 cut(s) 329
NlaIV GGNNCC 1 cut(s) 157
PciSI GCTCTTC 1 cut(s) 281
PkrI GCNGC 1 cut(s) 306
PspN4I GGNNCC 1 cut(s) 157
PspPI GGNCC 1 cut(s) 156
PsuI RGATCY 1 cut(s) 329
SapI GCTCTTC 1 cut(s) 281
SaqAI TTAA 4 cut(s) 15, 234, 279, 334
SatI GCNGC 1 cut(s) 305
Sau3AI GATC 1 cut(s) 329
Sau96I GGNCC 1 cut(s) 156
SgeI CNNG 6 cut(s) 43, 65, 96, 109, 311, 322
SinI GGWCC 1 cut(s) 156
Sse9I AATT 1 cut(s) 195
SspI AATATT 1 cut(s) 213
TaqI TCGA 1 cut(s) 298
TasI AATT 1 cut(s) 195
Tru1I TTAA 4 cut(s) 15, 234, 279, 334
Tru9I TTAA 4 cut(s) 15, 234, 279, 334
TseI GCWGC 1 cut(s) 304
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 90
VpaK11BI GGWCC 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.