Prupe.4G284200_v2.0.a1

Ammonium transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Forward (+)
24618770 .. 24619137
368 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G284200.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 333 bp
ATGTGCACTCTTTTGCCCGTCACAAACTCGCGCGGATGCGTGTACGGAGGCTCAGGAGGAATGCAAATCCTCAAACAAATTGTGGGAGCCCTATTTATCATTGGATGGAATATTGTGGTCACCTCCATTATTTGCCTAGTCTTACGGTGTATAGTTCCGTTGCGCATGCCGGAGGAACAGTTGCTGATTGGGGATGACGCAGTGCATGGAGAAGAGGCATATGCATTGTGGGGTGATGGGGAGAAGTATGATGTTACTAGGCATGAACTTTGCTCCGATGATACGTCACACGCTCAAAAATATCCATCCAGTGGTGCCACTCAGGTGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ammonium_transp

Protein Analysis

111

Amino Acids

11.92

Weight (kDa)

4.93

Isoelectric Point (pI)

44.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 164
AccB1I GGYRCC 1 cut(s) 314
AccB7I CCANNNNNTGG 1 cut(s) 311
AccII CGCG 2 cut(s) 31, 33
AciI CCGC 1 cut(s) 33
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 1 cut(s) 311
AleI CACNNNNGTG 1 cut(s) 323
Alw21I GWGCWC 1 cut(s) 8
Alw44I GTGCAC 1 cut(s) 4
AlwNI CAGNNNCTG 1 cut(s) 184
ApaLI GTGCAC 1 cut(s) 4
AspLEI GCGC 2 cut(s) 33, 165
AsuHPI GGTGA 2 cut(s) 112, 245
BaeGI GKGCMC 1 cut(s) 8
BanI GGYRCC 1 cut(s) 314
BanII GRGCYC 1 cut(s) 91
Bbv12I GWGCWC 1 cut(s) 8
BccI CCATC 3 cut(s) 99, 230, 313
BfaI CTAG 2 cut(s) 137, 258
BmiI GGNNCC 2 cut(s) 88, 316
BmsI GCATC 1 cut(s) 26
Bpu10I CCTNAGC 1 cut(s) 52
BsaXI ACNNNNNCTCC 2 cut(s) 164, 194
Bsc4I CCNNNNNNNGG 1 cut(s) 311
Bse1I ACTGG 1 cut(s) 309
BseGI GGATG 4 cut(s) 41, 110, 199, 305
BseLI CCNNNNNNNGG 1 cut(s) 311
BseMII CTCAG 1 cut(s) 66
BseNI ACTGG 1 cut(s) 309
BseSI GKGCMC 1 cut(s) 8
Bsh1236I CGCG 2 cut(s) 31, 33
BshNI GGYRCC 1 cut(s) 314
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 311
BsmI GAATGC 1 cut(s) 66
Bsp1286I GDGCHC 2 cut(s) 8, 91
BspACI CCGC 1 cut(s) 33
BspCNI CTCAG 1 cut(s) 65
BspFNI CGCG 2 cut(s) 31, 33
BspLI GGNNCC 2 cut(s) 88, 316
BspT107I GGYRCC 1 cut(s) 314
BsrI ACTGG 1 cut(s) 309
Bst4CI ACNGT 2 cut(s) 147, 180
Bst6I CTCTTC 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 167
BstDEI CTNAG 2 cut(s) 52, 321
BstEII GGTNACC 1 cut(s) 118
BstF5I GGATG 4 cut(s) 41, 110, 199, 305
BstFNI CGCG 2 cut(s) 31, 33
BstHHI GCGC 2 cut(s) 33, 165
BstNSI RCATGY 1 cut(s) 169
BstPI GGTNACC 1 cut(s) 118
BstSLI GKGCMC 1 cut(s) 8
BstUI CGCG 2 cut(s) 31, 33
BstXI CCANNNNNNTGG 1 cut(s) 325
BtsCI GGATG 4 cut(s) 41, 110, 199, 305
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 2 cut(s) 207, 316
Cac8I GCNNGC 1 cut(s) 167
CaiI CAGNNNCTG 1 cut(s) 184
CfoI GCGC 2 cut(s) 33, 165
CseI GACGC 1 cut(s) 206
Csp6I GTAC 1 cut(s) 43
CviAII CATG 3 cut(s) 166, 206, 263
CviJI RGCY 2 cut(s) 51, 89
CviKI_1 RGCY 2 cut(s) 51, 89
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 2 cut(s) 52, 321
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Eco24I GRGCYC 1 cut(s) 91
Eco91I GGTNACC 1 cut(s) 118
EcoO65I GGTNACC 1 cut(s) 118
EcoT22I ATGCAT 1 cut(s) 226
EcoT38I GRGCYC 1 cut(s) 91
FaeI CATG 3 cut(s) 169, 209, 266
FaiI YATR 7 cut(s) 152, 167, 207, 220, 222, 249, 264
FatI CATG 3 cut(s) 165, 205, 262
FauNDI CATATG 1 cut(s) 220
FokI GGATG 4 cut(s) 48, 117, 206, 292
FriOI GRGCYC 1 cut(s) 91
FspBI CTAG 2 cut(s) 137, 258
FspI TGCGCA 1 cut(s) 164
GlaI GCGC 2 cut(s) 32, 164
HapII CCGG 1 cut(s) 170
HgaI GACGC 1 cut(s) 206
HhaI GCGC 2 cut(s) 33, 165
Hin1II CATG 3 cut(s) 169, 209, 266
Hin6I GCGC 2 cut(s) 31, 163
HinP1I GCGC 2 cut(s) 31, 163
HpaII CCGG 1 cut(s) 170
HphI GGTGA 2 cut(s) 112, 245
Hpy166II GTNNAC 2 cut(s) 6, 43
Hpy188I TCNGA 1 cut(s) 277
Hpy188III TCNNGA 1 cut(s) 54
Hpy8I GTNNAC 2 cut(s) 6, 43
HpyCH4III ACNGT 2 cut(s) 147, 180
HpyCH4IV ACGT 1 cut(s) 284
HpyCH4V TGCA 4 cut(s) 6, 64, 205, 224
HpyF3I CTNAG 2 cut(s) 52, 321
HpySE526I ACGT 1 cut(s) 284
Hsp92II CATG 3 cut(s) 169, 209, 266
HspAI GCGC 2 cut(s) 31, 163
LmnI GCTCC 2 cut(s) 86, 278
LpnPI CCDG 4 cut(s) 39, 183, 308, 322
LweI GCATC 1 cut(s) 26
MaeI CTAG 2 cut(s) 137, 258
MaeII ACGT 1 cut(s) 284
MaeIII GTNAC 4 cut(s) 19, 118, 253, 285
MboII GAAGA 1 cut(s) 224
MhlI GDGCHC 2 cut(s) 8, 91
MluCI AATT 1 cut(s) 78
MnlI CCTC 6 cut(s) 41, 50, 80, 133, 166, 208
Mph1103I ATGCAT 1 cut(s) 226
MslI CAYNNNNRTG 1 cut(s) 323
MspI CCGG 1 cut(s) 170
Mva1269I GAATGC 1 cut(s) 66
MvnI CGCG 2 cut(s) 31, 33
NdeI CATATG 1 cut(s) 220
NlaIII CATG 3 cut(s) 169, 209, 266
NlaIV GGNNCC 2 cut(s) 88, 316
NmuCI GTSAC 3 cut(s) 19, 118, 285
NsbI TGCGCA 1 cut(s) 164
NsiI ATGCAT 1 cut(s) 226
NspI RCATGY 1 cut(s) 169
OliI CACNNNNGTG 1 cut(s) 323
PaeI GCATGC 1 cut(s) 169
PctI GAATGC 1 cut(s) 66
PflMI CCANNNNNTGG 1 cut(s) 311
PspEI GGTNACC 1 cut(s) 118
PspN4I GGNNCC 2 cut(s) 88, 316
PstNI CAGNNNCTG 1 cut(s) 184
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 323
SduI GDGCHC 2 cut(s) 8, 91
SetI ASST 3 cut(s) 125, 287, 327
SfaNI GCATC 1 cut(s) 26
SmiMI CAYNNNNRTG 1 cut(s) 323
SphI GCATGC 1 cut(s) 169
Sse9I AATT 1 cut(s) 78
SsiI CCGC 1 cut(s) 33
SspI AATATT 1 cut(s) 112
SspMI CTAG 2 cut(s) 137, 258
TaaI ACNGT 2 cut(s) 147, 180
TaiI ACGT 1 cut(s) 287
TasI AATT 1 cut(s) 78
TscAI CASTG 2 cut(s) 207, 316
TseFI GTSAC 3 cut(s) 19, 118, 285
Tsp45I GTSAC 3 cut(s) 19, 118, 285
TspDTI ATGAA 1 cut(s) 279
TspGWI ACGGA 2 cut(s) 60, 147
TspRI CASTG 2 cut(s) 207, 316
Van91I CCANNNNNTGG 1 cut(s) 311
VneI GTGCAC 1 cut(s) 4
XceI RCATGY 1 cut(s) 169
XspI CTAG 2 cut(s) 137, 258
Zsp2I ATGCAT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.