Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

25449480 .. 25451475

Gene Structure 1996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G289200.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGTATCTGCAAGAACAATTTTTCAAAGACCAAATCAAAATAATTCATGAATCAAGGGATGCAAAGGAAGAAAGCTTTGAGAGGCTGCAGCAGGAAGAACGTGACAAGGTGAAGCAGTCGTATGTCAATCCTTCAAATGGAGAGGAAAAGAAATACAGGTCGGCGGAAATTGATAACTTCATCAAGTCTCAAGAAAAAGAGATGGAAGAATTTGTGGAAGAGAGAGATATTGATGGGGATCGGGATCCGGAGACAGATATGCTGATAAAAGCTCATGAAGATAATAAAACTGCAATGAAGTGGAGGCATTGGGAGGAAGAGGTAGAACTGGAGAAGGATTTTGATGCCAAATTAACCCAGCTCATGGAGAAGTATTCCCCGCATTGTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005737 GO:0005783 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009791 GO:0009892 GO:0009987 GO:0010025 GO:0010033 GO:0010050 GO:0010166 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0012505 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0030677 GO:0030681 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035194 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0045087 GO:0046483 GO:0048519 GO:0048856 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0098542 GO:0098586 GO:1901360 GO:1901568 GO:1901570 GO:1901576 GO:1901698 GO:1901699 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XS zf-XS

Protein Analysis

131

Amino Acids

15.82

Weight (kDa)

4.74

Isoelectric Point (pI)

57.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	364
AccIII	TCCGGA	1 cut(s)	247
AciI	CCGC	2 cut(s)	164, 380
AclWI	GGATC	3 cut(s)	239, 246, 252
AcsI	RAATTY	1 cut(s)	209
AfiI	CCNNNNNNNGG	2 cut(s)	137, 364
AgsI	TTSAA	2 cut(s)	25, 135
AluBI	AGCT	3 cut(s)	75, 272, 361
AluI	AGCT	3 cut(s)	75, 272, 361
Alw26I	GTCTC	2 cut(s)	192, 245
AlwI	GGATC	3 cut(s)	239, 246, 252
Aor13HI	TCCGGA	1 cut(s)	247
ApeKI	GCWGC	2 cut(s)	85, 88
ApoI	RAATTY	1 cut(s)	209
AsuHPI	GGTGA	1 cut(s)	121
BamHI	GGATCC	1 cut(s)	244
BbvI	GCAGC	2 cut(s)	72, 100
BccI	CCATC	2 cut(s)	196, 227
BcoDI	GTCTC	2 cut(s)	192, 245
BfmI	CTRYAG	1 cut(s)	86
BisI	GCNGC	2 cut(s)	86, 89
BlsI	GCNGC	2 cut(s)	87, 90
BmiI	GGNNCC	1 cut(s)	246
BmsI	GCATC	2 cut(s)	49, 334
BpmI	CTGGAG	1 cut(s)	350
BpuEI	CTTGAG	1 cut(s)	174
BsaBI	GATNNNNATC	2 cut(s)	237, 243
BsaWI	WCCGGW	1 cut(s)	247
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 364
Bse1I	ACTGG	1 cut(s)	333
Bse3DI	GCAATG	1 cut(s)	300
Bse8I	GATNNNNATC	2 cut(s)	237, 243
BseAI	TCCGGA	1 cut(s)	247
BseGI	GGATG	1 cut(s)	64
BseJI	GATNNNNATC	2 cut(s)	237, 243
BseLI	CCNNNNNNNGG	2 cut(s)	137, 364
BseMI	GCAATG	1 cut(s)	300
BseNI	ACTGG	1 cut(s)	333
BseXI	GCAGC	2 cut(s)	72, 100
BseYI	CCCAGC	1 cut(s)	357
BsiSI	CCGG	1 cut(s)	248
BslI	CCNNNNNNNGG	2 cut(s)	137, 364
BsmAI	GTCTC	2 cut(s)	192, 245
Bsp13I	TCCGGA	1 cut(s)	247
Bsp143I	GATC	2 cut(s)	238, 244
BspACI	CCGC	2 cut(s)	164, 380
BspEI	TCCGGA	1 cut(s)	247
BspHI	TCATGA	2 cut(s)	46, 274
BspLI	GGNNCC	1 cut(s)	246
BspMAI	CTGCAG	1 cut(s)	90
BspPI	GGATC	3 cut(s)	239, 246, 252
BsrDI	GCAATG	1 cut(s)	300
BsrI	ACTGG	1 cut(s)	333
BssMI	GATC	2 cut(s)	238, 244
Bst6I	CTCTTC	2 cut(s)	213, 312
BstF5I	GGATG	1 cut(s)	64
BstKTI	GATC	2 cut(s)	241, 247
BstMAI	GTCTC	2 cut(s)	192, 245
BstMBI	GATC	2 cut(s)	238, 244
BstSFI	CTRYAG	1 cut(s)	86
BstV1I	GCAGC	2 cut(s)	72, 100
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BtsCI	GGATG	1 cut(s)	64
CciI	TCATGA	2 cut(s)	46, 274
CviAII	CATG	3 cut(s)	47, 275, 364
CviJI	RGCY	4 cut(s)	75, 85, 272, 361
CviKI_1	RGCY	4 cut(s)	75, 85, 272, 361
DpnI	GATC	2 cut(s)	240, 246
DpnII	GATC	2 cut(s)	238, 244
Eam1104I	CTCTTC	2 cut(s)	213, 312
EarI	CTCTTC	2 cut(s)	213, 312
EciI	GGCGGA	1 cut(s)	179
FaeI	CATG	3 cut(s)	50, 278, 367
FaiI	YATR	5 cut(s)	48, 123, 260, 276, 365
FatI	CATG	3 cut(s)	46, 274, 363
FauI	CCCGC	1 cut(s)	387
Fnu4HI	GCNGC	2 cut(s)	86, 89
FokI	GGATG	1 cut(s)	71
Fsp4HI	GCNGC	2 cut(s)	86, 89
GluI	GCNGC	2 cut(s)	86, 89
GsaI	CCCAGC	1 cut(s)	361
GsuI	CTGGAG	1 cut(s)	350
HapII	CCGG	1 cut(s)	248
Hin1II	CATG	3 cut(s)	50, 278, 367
HindIII	AAGCTT	1 cut(s)	73
HinfI	GANTC	1 cut(s)	50
HpaII	CCGG	1 cut(s)	248
HphI	GGTGA	1 cut(s)	121
Hpy188III	TCNNGA	5 cut(s)	47, 191, 242, 248, 275
HpyAV	CCTTC	2 cut(s)	141, 328
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	4 cut(s)	10, 62, 88, 293
HpySE526I	ACGT	1 cut(s)	100
Hsp92II	CATG	3 cut(s)	50, 278, 367
Kpn2I	TCCGGA	1 cut(s)	247
Kzo9I	GATC	2 cut(s)	238, 244
LpnPI	CCDG	5 cut(s)	77, 142, 261, 314, 371
Lsp1109I	GCAGC	2 cut(s)	72, 100
LweI	GCATC	2 cut(s)	49, 334
MaeII	ACGT	1 cut(s)	100
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	2 cut(s)	240, 246
MboI	GATC	2 cut(s)	238, 244
MboII	GAAGA	6 cut(s)	80, 107, 218, 230, 290, 329
MflI	RGATCY	1 cut(s)	244
MluCI	AATT	5 cut(s)	17, 42, 168, 209, 350
MnlI	CCTC	5 cut(s)	75, 136, 297, 307, 313
MroI	TCCGGA	1 cut(s)	247
MseI	TTAA	1 cut(s)	353
MspI	CCGG	1 cut(s)	248
NdeII	GATC	2 cut(s)	238, 244
NlaIII	CATG	3 cut(s)	50, 278, 367
NlaIV	GGNNCC	1 cut(s)	246
NmuCI	GTSAC	1 cut(s)	101
PagI	TCATGA	2 cut(s)	46, 274
PfeI	GAWTC	1 cut(s)	50
PflMI	CCANNNNNTGG	1 cut(s)	364
PkrI	GCNGC	2 cut(s)	87, 90
PspFI	CCCAGC	1 cut(s)	357
PspN4I	GGNNCC	1 cut(s)	246
PstI	CTGCAG	1 cut(s)	90
PsuI	RGATCY	1 cut(s)	244
SaqAI	TTAA	1 cut(s)	353
SatI	GCNGC	2 cut(s)	86, 89
Sau3AI	GATC	2 cut(s)	238, 244
SetI	ASST	7 cut(s)	77, 103, 111, 161, 274, 324, 363
SfaNI	GCATC	2 cut(s)	49, 334
SfcI	CTRYAG	1 cut(s)	86
SmlI	CTYRAG	1 cut(s)	189
SmoI	CTYRAG	1 cut(s)	189
Sse9I	AATT	5 cut(s)	17, 42, 168, 209, 350
SsiI	CCGC	2 cut(s)	164, 380
TaiI	ACGT	1 cut(s)	103
TasI	AATT	5 cut(s)	17, 42, 168, 209, 350
TfiI	GAWTC	1 cut(s)	50
Tru1I	TTAA	1 cut(s)	353
Tru9I	TTAA	1 cut(s)	353
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	2 cut(s)	85, 88
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	5 cut(s)	35, 63, 169, 291, 311
Van91I	CCANNNNNTGG	1 cut(s)	364
XapI	RAATTY	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.