Prupe.4G289600_v2.0.a1

Glycosyl hydrolases family 28

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Forward (+)
25507118 .. 25507318
201 bp
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UTR
Exon/CDS
Intron
Prupe.4G289600.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 201 bp
ATGTCCTTCCTTTCAACTGTGTTTGAATACAACATTATTGGAAGCTTAGGGAGGAATGGGAATTTTGTTCAAGTAGAGAACATTCATGTAAGTAAGATATACCTCCAAGGAACTACCAAGGGAGCTCGGATCAAGACATGGCAAGTACTAAATCAAAGTGGTATACATGCTAGCATTTTAAGTTTTACTGCCTTATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

67

Amino Acids

7.31

Weight (kDa)

9.82

Isoelectric Point (pI)

30.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 163
AclWI GGATC 1 cut(s) 137
AcsI RAATTY 1 cut(s) 61
AfaI GTAC 1 cut(s) 147
AgsI TTSAA 3 cut(s) 15, 26, 71
AluBI AGCT 2 cut(s) 45, 125
AluI AGCT 2 cut(s) 45, 125
Alw21I GWGCWC 1 cut(s) 127
AlwI GGATC 1 cut(s) 137
ApoI RAATTY 1 cut(s) 61
AsuNHI GCTAGC 1 cut(s) 170
BanII GRGCYC 1 cut(s) 127
Bbv12I GWGCWC 1 cut(s) 127
BfaI CTAG 1 cut(s) 171
BmcAI AGTACT 1 cut(s) 147
BmtI GCTAGC 1 cut(s) 174
Bpu10I CCTNAGC 1 cut(s) 46
BsaJI CCNNGG 2 cut(s) 106, 117
BseDI CCNNGG 2 cut(s) 106, 117
BsiHKAI GWGCWC 1 cut(s) 127
Bsp1286I GDGCHC 1 cut(s) 127
Bsp143I GATC 1 cut(s) 129
BspOI GCTAGC 1 cut(s) 174
BspPI GGATC 1 cut(s) 137
BssECI CCNNGG 2 cut(s) 106, 117
BssMI GATC 1 cut(s) 129
BssNAI GTATAC 1 cut(s) 164
BssT1I CCWWGG 2 cut(s) 106, 117
Bst1107I GTATAC 1 cut(s) 164
Bst4CI ACNGT 1 cut(s) 19
BstC8I GCNNGC 1 cut(s) 172
BstDEI CTNAG 1 cut(s) 46
BstKTI GATC 1 cut(s) 132
BstMBI GATC 1 cut(s) 129
BstNSI RCATGY 1 cut(s) 170
BstZ17I GTATAC 1 cut(s) 164
Cac8I GCNNGC 1 cut(s) 172
Csp6I GTAC 1 cut(s) 146
CviAII CATG 3 cut(s) 86, 138, 167
CviJI RGCY 2 cut(s) 45, 125
CviKI_1 RGCY 2 cut(s) 45, 125
CviQI GTAC 1 cut(s) 146
DdeI CTNAG 1 cut(s) 46
DpnI GATC 1 cut(s) 131
DpnII GATC 1 cut(s) 129
Ecl136II GAGCTC 1 cut(s) 125
Eco130I CCWWGG 2 cut(s) 106, 117
Eco24I GRGCYC 1 cut(s) 127
Eco53kI GAGCTC 1 cut(s) 125
EcoICRI GAGCTC 1 cut(s) 125
EcoT14I CCWWGG 2 cut(s) 106, 117
EcoT38I GRGCYC 1 cut(s) 127
ErhI CCWWGG 2 cut(s) 106, 117
FaeI CATG 3 cut(s) 89, 141, 170
FaiI YATR 6 cut(s) 87, 100, 139, 164, 168, 199
FatI CATG 3 cut(s) 85, 137, 166
FblI GTMKAC 1 cut(s) 163
FriOI GRGCYC 1 cut(s) 127
FspBI CTAG 1 cut(s) 171
Hin1II CATG 3 cut(s) 89, 141, 170
HindIII AAGCTT 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 164
Hpy188I TCNGA 1 cut(s) 129
Hpy188III TCNNGA 1 cut(s) 133
Hpy8I GTNNAC 1 cut(s) 164
HpyAV CCTTC 1 cut(s) 16
HpyCH4III ACNGT 1 cut(s) 19
HpyF3I CTNAG 1 cut(s) 46
Hsp92II CATG 3 cut(s) 89, 141, 170
Kzo9I GATC 1 cut(s) 129
LmnI GCTCC 1 cut(s) 122
MaeI CTAG 1 cut(s) 171
MalI GATC 1 cut(s) 131
MboI GATC 1 cut(s) 129
MhlI GDGCHC 1 cut(s) 127
MluCI AATT 1 cut(s) 61
MnlI CCTC 2 cut(s) 45, 113
MseI TTAA 1 cut(s) 179
NdeII GATC 1 cut(s) 129
NheI GCTAGC 1 cut(s) 170
NlaIII CATG 3 cut(s) 89, 141, 170
NspI RCATGY 1 cut(s) 170
Psp124BI GAGCTC 1 cut(s) 127
RsaI GTAC 1 cut(s) 147
RsaNI GTAC 1 cut(s) 146
SacI GAGCTC 1 cut(s) 127
SaqAI TTAA 1 cut(s) 179
Sau3AI GATC 1 cut(s) 129
ScaI AGTACT 1 cut(s) 147
SduI GDGCHC 1 cut(s) 127
SetI ASST 3 cut(s) 47, 105, 127
Sse9I AATT 1 cut(s) 61
SspMI CTAG 1 cut(s) 171
SstI GAGCTC 1 cut(s) 127
StyI CCWWGG 2 cut(s) 106, 117
TaaI ACNGT 1 cut(s) 19
TasI AATT 1 cut(s) 61
TatI WGTACW 1 cut(s) 145
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TspDTI ATGAA 1 cut(s) 74
XapI RAATTY 1 cut(s) 61
XceI RCATGY 1 cut(s) 170
XmiI GTMKAC 1 cut(s) 163
XspI CTAG 1 cut(s) 171
ZrmI AGTACT 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.