Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

202891 .. 203448

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G000600.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGAGATCACCCCCAAGTCATCATCGTCCGCCCTGGGAAGATTGTGCCGTAAACTGTCTCCAAGAAAGACAAAGGCAGGTCATCATGATGTAGAGGGCCCAATTGAGAACCCAACAACATGCAGCAGCATCAGCAGCAACAGCGACCTCCAGATGTGGAAGGTGTTTGATTTCTTCGACGAGAACGGAGATGGTAAGATTTCCCCAGCAGAGCTGCAGACTTGTGTGAGGAGTGTTGGGGGAGAGCTGTCTGAGGAGGAAGCGGAGGCCGCCGTGGAGGCTTCGGATTTGGATGGAGATGGGCTGCTGGGGTTTGAAGAATTCCAGAAGTTGATGGAAGCCACAAACGAGGACAACAACAATCAGCAGCTCAGAGATGCCTTTGGGATGTATGAAATGGAAGGCTCCGGCTGCATAACCCCAGCCAGCTTGAAGAGGATGCTCAGCCGCCTCGGCGACTCTCGCTCCATCGATGACTGCAAGGCCATGATTCGAGCGTTCGACCTTAATGGAGATGGGGCTCTCAGCTTTAATGAGTTCACAATCATGATGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0009611 GO:0010035 GO:0010193 GO:0016020 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0046872 GO:0050896 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_8

Protein Analysis

186

Amino Acids

20.28

Weight (kDa)

4.53

Isoelectric Point (pI)

42.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	68
AciI	CCGC	4 cut(s)	30, 263, 270, 448
AcsI	RAATTY	1 cut(s)	320
AgsI	TTSAA	2 cut(s)	317, 433
AjnI	CCWGG	1 cut(s)	33
AluBI	AGCT	5 cut(s)	214, 247, 370, 429, 528
AluI	AGCT	5 cut(s)	214, 247, 370, 429, 528
Alw26I	GTCTC	1 cut(s)	63
AoxI	GGCC	3 cut(s)	97, 267, 483
ApaI	GGGCCC	1 cut(s)	101
ApeKI	GCWGC	7 cut(s)	123, 126, 135, 214, 304, 367, 411
ApoI	RAATTY	1 cut(s)	320
AspS9I	GGNCC	2 cut(s)	97, 98
BaeGI	GKGCMC	1 cut(s)	101
BanII	GRGCYC	2 cut(s)	101, 523
BbvI	GCAGC	7 cut(s)	135, 138, 147, 201, 291, 379, 398
BccI	CCATC	6 cut(s)	185, 287, 293, 328, 476, 509
BceAI	ACGGC	2 cut(s)	33, 257
BciT130I	CCWGG	1 cut(s)	35
BcoDI	GTCTC	1 cut(s)	63
BfmI	CTRYAG	1 cut(s)	215
BfuAI	ACCTGC	1 cut(s)	68
BglI	GCCNNNNNGGC	2 cut(s)	278, 453
BisI	GCNGC	9 cut(s)	124, 127, 136, 215, 270, 305, 368, 412, 448
BlpI	GCTNAGC	1 cut(s)	443
BlsI	GCNGC	9 cut(s)	125, 128, 137, 216, 271, 306, 369, 413, 449
Bme1390I	CCNGG	1 cut(s)	35
BmgT120I	GGNCC	2 cut(s)	97, 98
BmiI	GGNNCC	2 cut(s)	99, 406
BmrFI	CCNGG	1 cut(s)	35
BmsI	GCATC	4 cut(s)	138, 367, 429, 540
BpmI	CTGGAG	1 cut(s)	134
Bpu1102I	GCTNAGC	1 cut(s)	443
Bsa29I	ATCGAT	1 cut(s)	471
BsaJI	CCNNGG	4 cut(s)	33, 34, 273, 451
BsaXI	ACNNNNNCTCC	2 cut(s)	449, 479
BseBI	CCWGG	1 cut(s)	35
BseCI	ATCGAT	1 cut(s)	471
BseDI	CCNNGG	4 cut(s)	33, 34, 273, 451
BseGI	GGATG	3 cut(s)	298, 393, 444
BseMII	CTCAG	4 cut(s)	243, 385, 457, 538
BseRI	GAGGAG	2 cut(s)	244, 269
BseSI	GKGCMC	1 cut(s)	101
BseXI	GCAGC	7 cut(s)	135, 138, 147, 201, 291, 379, 398
BseYI	CCCAGC	3 cut(s)	205, 307, 421
BshFI	GGCC	3 cut(s)	99, 269, 485
BshVI	ATCGAT	1 cut(s)	471
BsiSI	CCGG	1 cut(s)	408
BsmAI	GTCTC	1 cut(s)	63
BsnI	GGCC	3 cut(s)	99, 269, 485
Bsp120I	GGGCCC	1 cut(s)	97
Bsp1286I	GDGCHC	2 cut(s)	101, 523
Bsp143I	GATC	1 cut(s)	6
Bsp1720I	GCTNAGC	1 cut(s)	443
BspACI	CCGC	4 cut(s)	30, 263, 270, 448
BspANI	GGCC	3 cut(s)	99, 269, 485
BspCNI	CTCAG	4 cut(s)	244, 384, 456, 537
BspDI	ATCGAT	1 cut(s)	471
BspHI	TCATGA	2 cut(s)	85, 546
BspLI	GGNNCC	2 cut(s)	99, 406
BspMAI	CTGCAG	1 cut(s)	219
BspMI	ACCTGC	1 cut(s)	68
BssECI	CCNNGG	4 cut(s)	33, 34, 273, 451
BssMI	GATC	1 cut(s)	6
Bst2UI	CCWGG	1 cut(s)	35
Bst4CI	ACNGT	1 cut(s)	57
Bst6I	CTCTTC	1 cut(s)	428
BstC8I	GCNNGC	1 cut(s)	427
BstDEI	CTNAG	4 cut(s)	252, 371, 443, 524
BstDSI	CCRYGG	1 cut(s)	273
BstF5I	GGATG	3 cut(s)	298, 393, 444
BstKTI	GATC	1 cut(s)	9
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	1 cut(s)	6
BstMWI	GCNNNNNNNGC	8 cut(s)	132, 135, 141, 269, 278, 411, 453, 462
BstNI	CCWGG	1 cut(s)	35
BstNSI	RCATGY	1 cut(s)	123
BstSCI	CCNGG	1 cut(s)	33
BstSFI	CTRYAG	1 cut(s)	215
BstSLI	GKGCMC	1 cut(s)	101
BstV1I	GCAGC	7 cut(s)	135, 138, 147, 201, 291, 379, 398
Bsu15I	ATCGAT	1 cut(s)	471
BsuRI	GGCC	3 cut(s)	99, 269, 485
BsuTUI	ATCGAT	1 cut(s)	471
BtgI	CCRYGG	1 cut(s)	273
BtsCI	GGATG	3 cut(s)	298, 393, 444
BveI	ACCTGC	1 cut(s)	68
Cac8I	GCNNGC	1 cut(s)	427
CciI	TCATGA	2 cut(s)	85, 546
Cfr13I	GGNCC	2 cut(s)	97, 98
ClaI	ATCGAT	1 cut(s)	471
CviAII	CATG	4 cut(s)	86, 120, 487, 547
DdeI	CTNAG	4 cut(s)	252, 371, 443, 524
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	428
EarI	CTCTTC	1 cut(s)	428
EciI	GGCGGA	1 cut(s)	19
Eco24I	GRGCYC	2 cut(s)	101, 523
EcoO109I	RGGNCCY	1 cut(s)	97
EcoRI	GAATTC	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	33
EcoT38I	GRGCYC	2 cut(s)	101, 523
FaeI	CATG	4 cut(s)	89, 123, 490, 550
FaiI	YATR	6 cut(s)	87, 121, 393, 416, 488, 548
FatI	CATG	4 cut(s)	85, 119, 486, 546
Fnu4HI	GCNGC	9 cut(s)	124, 127, 136, 215, 270, 305, 368, 412, 448
FokI	GGATG	3 cut(s)	305, 400, 451
FriOI	GRGCYC	2 cut(s)	101, 523
Fsp4HI	GCNGC	9 cut(s)	124, 127, 136, 215, 270, 305, 368, 412, 448
GluI	GCNGC	9 cut(s)	124, 127, 136, 215, 270, 305, 368, 412, 448
GsaI	CCCAGC	3 cut(s)	209, 311, 425
GsuI	CTGGAG	1 cut(s)	134
HaeIII	GGCC	3 cut(s)	99, 269, 485
HapII	CCGG	1 cut(s)	408
Hin1II	CATG	4 cut(s)	89, 123, 490, 550
HinfI	GANTC	2 cut(s)	458, 490
HpaII	CCGG	1 cut(s)	408
Hpy166II	GTNNAC	2 cut(s)	53, 540
Hpy188I	TCNGA	3 cut(s)	253, 286, 374
Hpy188III	TCNNGA	4 cut(s)	86, 151, 325, 547
Hpy8I	GTNNAC	2 cut(s)	53, 540
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	2 cut(s)	154, 395
HpyCH4III	ACNGT	1 cut(s)	57
HpyCH4V	TGCA	4 cut(s)	123, 217, 414, 480
HpyF10VI	GCNNNNNNNGC	8 cut(s)	132, 135, 141, 269, 278, 411, 453, 462
HpyF3I	CTNAG	4 cut(s)	252, 371, 443, 524
Hsp92II	CATG	4 cut(s)	89, 123, 490, 550
Kzo9I	GATC	1 cut(s)	6
LmnI	GCTCC	2 cut(s)	410, 470
Lsp1109I	GCAGC	7 cut(s)	135, 138, 147, 201, 291, 379, 398
LweI	GCATC	4 cut(s)	138, 367, 429, 540
MalI	GATC	1 cut(s)	8
MboI	GATC	1 cut(s)	6
MboII	GAAGA	4 cut(s)	51, 166, 329, 445
MfeI	CAATTG	1 cut(s)	102
MhlI	GDGCHC	2 cut(s)	101, 523
MluCI	AATT	2 cut(s)	102, 320
MlyI	GAGTC	1 cut(s)	452
MseI	TTAA	3 cut(s)	507, 531, 556
MslI	CAYNNNNRTG	2 cut(s)	87, 545
MspI	CCGG	1 cut(s)	408
MspR9I	CCNGG	1 cut(s)	35
MunI	CAATTG	1 cut(s)	102
MvaI	CCWGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	8 cut(s)	132, 135, 141, 269, 278, 411, 453, 462
NdeII	GATC	1 cut(s)	6
NlaIII	CATG	4 cut(s)	89, 123, 490, 550
NlaIV	GGNNCC	2 cut(s)	99, 406
NmeAIII	GCCGAG	1 cut(s)	432
NspI	RCATGY	1 cut(s)	123
PagI	TCATGA	2 cut(s)	85, 546
PasI	CCCWGGG	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	490
PkrI	GCNGC	9 cut(s)	125, 128, 137, 216, 271, 306, 369, 413, 449
PleI	GAGTC	1 cut(s)	452
PpsI	GAGTC	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	33
PspFI	CCCAGC	3 cut(s)	205, 307, 421
PspGI	CCWGG	1 cut(s)	33
PspN4I	GGNNCC	2 cut(s)	99, 406
PspOMI	GGGCCC	1 cut(s)	97
PspPI	GGNCC	2 cut(s)	97, 98
PstI	CTGCAG	1 cut(s)	219
RseI	CAYNNNNRTG	2 cut(s)	87, 545
SaqAI	TTAA	3 cut(s)	507, 531, 556
SatI	GCNGC	9 cut(s)	124, 127, 136, 215, 270, 305, 368, 412, 448
Sau3AI	GATC	1 cut(s)	6
Sau96I	GGNCC	2 cut(s)	97, 98
SchI	GAGTC	1 cut(s)	452
ScrFI	CCNGG	1 cut(s)	35
SduI	GDGCHC	2 cut(s)	101, 523
SetI	ASST	9 cut(s)	82, 150, 165, 216, 249, 372, 431, 507, 530
SfaNI	GCATC	4 cut(s)	138, 367, 429, 540
SfcI	CTRYAG	1 cut(s)	215
SmiMI	CAYNNNNRTG	2 cut(s)	87, 545
Sse9I	AATT	2 cut(s)	102, 320
SsiI	CCGC	4 cut(s)	30, 263, 270, 448
StyD4I	CCNGG	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	57
TaqI	TCGA	4 cut(s)	177, 471, 493, 501
TasI	AATT	2 cut(s)	102, 320
TauI	GCSGC	2 cut(s)	272, 450
TfiI	GAWTC	1 cut(s)	490
Tru1I	TTAA	3 cut(s)	507, 531, 556
Tru9I	TTAA	3 cut(s)	507, 531, 556
TseI	GCWGC	7 cut(s)	123, 126, 135, 214, 304, 367, 411
TspDTI	ATGAA	1 cut(s)	408
TspGWI	ACGGA	1 cut(s)	201
XapI	RAATTY	1 cut(s)	320
XceI	RCATGY	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.