Prupe.5G008400_v2.0.a1

BOI-related E3 ubiquitin-protein ligase 3

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
N/A
Physical Location & Seq
Reverse (-)
900015 .. 900882
868 bp
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UTR
Exon/CDS
Intron
Prupe.5G008400.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 201 bp
ATGCCATCCAATCAATCTTTAAGGAGGAAGTGGAAAGCGAGAAGAATAATGGACGCCATAGAGGTTGGGATGGTGAAGAGGCCCAGAGACAACAGGGAAGAGATTGAGAAAATTCGGAAATTGAATTGGGCTTTGGAAGAGAAGGTCAAGCCGTTGTGTATAAAGAATCATGTTTTGCTCACGCCAAGGTGGAGGGGATGA

Protein Analysis

67

Amino Acids

8.02

Weight (kDa)

10.95

Isoelectric Point (pI)

72.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 111
AcyI GRCGYC 1 cut(s) 54
AgsI TTSAA 1 cut(s) 124
AjuI GAANNNNNNNTTGG 2 cut(s) 116, 148
Alw26I GTCTC 1 cut(s) 81
AoxI GGCC 1 cut(s) 80
ApoI RAATTY 1 cut(s) 111
AspS9I GGNCC 1 cut(s) 81
AsuHPI GGTGA 1 cut(s) 85
BccI CCATC 2 cut(s) 13, 64
BceAI ACGGC 1 cut(s) 136
BcoDI GTCTC 1 cut(s) 81
BmgT120I GGNCC 1 cut(s) 81
BsaHI GRCGYC 1 cut(s) 54
BsaJI CCNNGG 1 cut(s) 185
BseDI CCNNGG 1 cut(s) 185
BseGI GGATG 2 cut(s) 5, 75
BshFI GGCC 1 cut(s) 82
BsmAI GTCTC 1 cut(s) 81
BsnI GGCC 1 cut(s) 82
BspANI GGCC 1 cut(s) 82
BssECI CCNNGG 1 cut(s) 185
BssNI GRCGYC 1 cut(s) 54
BssT1I CCWWGG 1 cut(s) 185
Bst6I CTCTTC 3 cut(s) 71, 93, 132
BstACI GRCGYC 1 cut(s) 54
BstF5I GGATG 2 cut(s) 5, 75
BstMAI GTCTC 1 cut(s) 81
BsuRI GGCC 1 cut(s) 82
BtsCI GGATG 2 cut(s) 5, 75
Cfr13I GGNCC 1 cut(s) 81
CseI GACGC 1 cut(s) 62
CviAII CATG 1 cut(s) 170
CviJI RGCY 3 cut(s) 82, 131, 151
CviKI_1 RGCY 3 cut(s) 82, 131, 151
Eam1104I CTCTTC 3 cut(s) 71, 93, 132
EarI CTCTTC 3 cut(s) 71, 93, 132
Eco130I CCWWGG 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 185
ErhI CCWWGG 1 cut(s) 185
FaeI CATG 1 cut(s) 173
FaiI YATR 3 cut(s) 59, 161, 171
FatI CATG 1 cut(s) 169
FokI GGATG 1 cut(s) 82
HaeIII GGCC 1 cut(s) 82
HgaI GACGC 1 cut(s) 62
Hin1I GRCGYC 1 cut(s) 54
Hin1II CATG 1 cut(s) 173
HinfI GANTC 1 cut(s) 166
HphI GGTGA 1 cut(s) 85
Hpy188I TCNGA 1 cut(s) 117
HpyAV CCTTC 1 cut(s) 136
Hsp92I GRCGYC 1 cut(s) 54
Hsp92II CATG 1 cut(s) 173
LpnPI CCDG 2 cut(s) 79, 97
MboII GAAGA 4 cut(s) 54, 88, 110, 149
MluCI AATT 3 cut(s) 111, 119, 124
MnlI CCTC 4 cut(s) 18, 55, 72, 186
MseI TTAA 1 cut(s) 20
NlaIII CATG 1 cut(s) 173
PfeI GAWTC 1 cut(s) 166
PspPI GGNCC 1 cut(s) 81
SaqAI TTAA 1 cut(s) 20
Sau96I GGNCC 1 cut(s) 81
SetI ASST 3 cut(s) 66, 147, 191
SgeI CNNG 6 cut(s) 51, 96, 106, 160, 182, 193
Sse9I AATT 3 cut(s) 111, 119, 124
StyI CCWWGG 1 cut(s) 185
TasI AATT 3 cut(s) 111, 119, 124
TfiI GAWTC 1 cut(s) 166
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
XapI RAATTY 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.