Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

904742 .. 911741

Gene Structure 7000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G008500.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGAGCCCCCTCACAAACTTAGATCTAGGTAGCATGAATCGCGGAGACAATTTCAAGAAAAAGAAATTAAATCACCCTCCTAGCAGCTTTGTCAAATCGCTGTGGCTGACAGCAATTATTCTTAAAATCATATTATTTTTTAATTTACCAAATAGAAGCCGATGCTGTGGCCGAGAAATTGCCCGGTTATTTCGACGTCATCATGGATTTCGGTACTGTGAAATCCAAATTGGAGAGAGATATTATCCGCTTGGGAATATTGAGCATGCAGCAGCCAAGAATCTCAGTGGTGTTTTTGAGACCAAGTGGAAAGAAGATACGGAGAAAAAGCCAAATGCTATTTGTCCCCCTCTCCGCAGGGTCCACCTTAGACTTCACTTAAGAAATTGGGTGTATACCCTCAAGGAAGATGATGAGTTGGAAGGTCAGGATGAGGAGGCTTTTGTGAATCGAGATTGGAAGGAATTTTCTAACTGTTTGAGGTTTCCAAGTGTTATGTGTATCAGAGTAGAATACCTATTTAGGATTGCAACTTATAATGCGTGGTCACATATACAGTTCTGTAATCTTAATCTTTTCATTTATTCCGATGTTATGCTTAACTCTCGTGTTTTATTCATTCCGTTTGATATAATTTGGTGTTTTATCATTCTGATGCAAAAAATTTCTCTCAGCCTTGTCATTATGGGTAACAACACTGAGTTTCAAAGCTCAGTTGTTTGGCTTTCTGAAAATTTAACGCTTGTCGATGCAAGAGTTAATCTTGTTGAGTGCAACATAAGAGTGCTTGGAGGACTTGTCTCTGGTCATCTACTTGCCACTGATTCTACAGACAGGTTGGGTGAAGGTACACAAGAATCAGCGGCTTACTTTGGCCGAGGATTTGGGGAAACACTTTCTACCTGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0004571 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006491 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015923 GO:0015924 GO:0016020 GO:0016787 GO:0016798 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0031090 GO:0031984 GO:0033554 GO:0034976 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0071704 GO:0098588 GO:0098791 GO:1901135 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Glyco_hydro_47

Protein Analysis

304

Amino Acids

35.07

Weight (kDa)

8.5

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	537
AatII	GACGTC	1 cut(s)	199
AccI	GTMKAC	1 cut(s)	395
AccII	CGCG	1 cut(s)	42
AciI	CCGC	4 cut(s)	42, 248, 355, 863
AcoI	YGGCCR	2 cut(s)	169, 874
AcsI	RAATTY	3 cut(s)	464, 663, 733
AcyI	GRCGYC	1 cut(s)	196
AfaI	GTAC	2 cut(s)	215, 850
AflII	CTTAAG	1 cut(s)	379
AgsI	TTSAA	2 cut(s)	55, 707
AjuI	GAANNNNNNNTTGG	2 cut(s)	213, 245
AluBI	AGCT	2 cut(s)	87, 711
AluI	AGCT	2 cut(s)	87, 711
Alw26I	GTCTC	3 cut(s)	39, 293, 805
AoxI	GGCC	2 cut(s)	169, 874
ApeKI	GCWGC	3 cut(s)	84, 269, 272
ApoI	RAATTY	3 cut(s)	464, 663, 733
AspS9I	GGNCC	1 cut(s)	361
AsuC2I	CCSGG	1 cut(s)	184
AsuHPI	GGTGA	2 cut(s)	65, 854
AvaII	GGWCC	1 cut(s)	361
BanII	GRGCYC	1 cut(s)	8
BauI	CACGAG	1 cut(s)	606
BbvI	GCAGC	3 cut(s)	96, 281, 284
BcnI	CCSGG	1 cut(s)	184
BcoDI	GTCTC	3 cut(s)	39, 293, 805
BfaI	CTAG	2 cut(s)	26, 81
BfmI	CTRYAG	1 cut(s)	828
BfrI	CTTAAG	1 cut(s)	379
BglII	AGATCT	1 cut(s)	22
BisI	GCNGC	4 cut(s)	85, 270, 273, 864
BlsI	GCNGC	4 cut(s)	86, 271, 274, 865
Bme1390I	CCNGG	1 cut(s)	184
Bme18I	GGWCC	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	361
BmiI	GGNNCC	1 cut(s)	362
BmrFI	CCNGG	1 cut(s)	184
BmsI	GCATC	3 cut(s)	152, 645, 739
BpuEI	CTTGAG	1 cut(s)	386
BpuMI	CCSGG	1 cut(s)	184
BsaHI	GRCGYC	1 cut(s)	196
BsaI	GGTCTC	1 cut(s)	293
BsaJI	CCNNGG	1 cut(s)	877
BsaXI	ACNNNNNCTCC	2 cut(s)	783, 813
BseDI	CCNNGG	1 cut(s)	877
BseGI	GGATG	1 cut(s)	436
BseMII	CTCAG	4 cut(s)	298, 685, 690, 726
BseRI	GAGGAG	1 cut(s)	449
BseXI	GCAGC	3 cut(s)	96, 281, 284
Bsh1236I	CGCG	1 cut(s)	42
BshFI	GGCC	2 cut(s)	171, 876
BsiSI	CCGG	1 cut(s)	184
BslFI	GGGAC	1 cut(s)	330
BsmAI	GTCTC	3 cut(s)	39, 293, 805
BsmFI	GGGAC	1 cut(s)	330
BsnI	GGCC	2 cut(s)	171, 876
Bso31I	GGTCTC	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	22
BspACI	CCGC	4 cut(s)	42, 248, 355, 863
BspANI	GGCC	2 cut(s)	171, 876
BspCNI	CTCAG	4 cut(s)	297, 684, 691, 725
BspFNI	CGCG	1 cut(s)	42
BspLI	GGNNCC	1 cut(s)	362
BspTI	CTTAAG	1 cut(s)	379
BspTNI	GGTCTC	1 cut(s)	293
BssECI	CCNNGG	1 cut(s)	877
BssMI	GATC	1 cut(s)	22
BssNAI	GTATAC	1 cut(s)	396
BssNI	GRCGYC	1 cut(s)	196
BssSI	CACGAG	1 cut(s)	606
Bst1107I	GTATAC	1 cut(s)	396
Bst2BI	CACGAG	1 cut(s)	606
Bst4CI	ACNGT	3 cut(s)	218, 476, 558
BstACI	GRCGYC	1 cut(s)	196
BstAFI	CTTAAG	1 cut(s)	379
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	6 cut(s)	19, 284, 368, 671, 699, 712
BstF5I	GGATG	1 cut(s)	436
BstFNI	CGCG	1 cut(s)	42
BstKTI	GATC	1 cut(s)	25
BstMAI	GTCTC	3 cut(s)	39, 293, 805
BstMBI	GATC	1 cut(s)	22
BstMWI	GCNNNNNNNGC	1 cut(s)	39
BstNSI	RCATGY	1 cut(s)	269
BstSCI	CCNGG	1 cut(s)	182
BstSFI	CTRYAG	1 cut(s)	828
BstUI	CGCG	1 cut(s)	42
BstV1I	GCAGC	3 cut(s)	96, 281, 284
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
BstZ17I	GTATAC	1 cut(s)	396
BsuRI	GGCC	2 cut(s)	171, 876
BtsCI	GGATG	1 cut(s)	436
BtsIMutI	CAGTG	3 cut(s)	292, 696, 819
Cac8I	GCNNGC	1 cut(s)	267
Cfr13I	GGNCC	1 cut(s)	361
Csp6I	GTAC	2 cut(s)	214, 849
CviAII	CATG	3 cut(s)	34, 203, 266
CviQI	GTAC	2 cut(s)	214, 849
DdeI	CTNAG	6 cut(s)	19, 284, 368, 671, 699, 712
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
EaeI	YGGCCR	2 cut(s)	169, 874
Eco24I	GRGCYC	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	293
Eco47I	GGWCC	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	3 cut(s)	37, 206, 269
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	3 cut(s)	33, 202, 265
FblI	GTMKAC	1 cut(s)	395
Fnu4HI	GCNGC	4 cut(s)	85, 270, 273, 864
FokI	GGATG	1 cut(s)	443
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	4 cut(s)	85, 270, 273, 864
FspBI	CTAG	2 cut(s)	26, 81
GluI	GCNGC	4 cut(s)	85, 270, 273, 864
HaeIII	GGCC	2 cut(s)	171, 876
HapII	CCGG	1 cut(s)	184
Hin1I	GRCGYC	1 cut(s)	196
Hin1II	CATG	3 cut(s)	37, 206, 269
HinfI	GANTC	5 cut(s)	37, 280, 448, 824, 857
HpaII	CCGG	1 cut(s)	184
HphI	GGTGA	2 cut(s)	65, 854
Hpy166II	GTNNAC	3 cut(s)	364, 396, 851
Hpy188I	TCNGA	4 cut(s)	506, 589, 654, 730
Hpy188III	TCNNGA	3 cut(s)	55, 428, 452
Hpy8I	GTNNAC	3 cut(s)	364, 396, 851
Hpy99I	CGWCG	1 cut(s)	198
HpyAV	CCTTC	3 cut(s)	416, 454, 839
HpyCH4III	ACNGT	3 cut(s)	218, 476, 558
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	6 cut(s)	269, 530, 658, 752, 774, 906
HpyF10VI	GCNNNNNNNGC	1 cut(s)	39
HpyF3I	CTNAG	6 cut(s)	19, 284, 368, 671, 699, 712
HpySE526I	ACGT	1 cut(s)	196
Hsp92I	GRCGYC	1 cut(s)	196
Hsp92II	CATG	3 cut(s)	37, 206, 269
Kzo9I	GATC	1 cut(s)	22
LpnPI	CCDG	5 cut(s)	197, 343, 413, 789, 820
Lsp1109I	GCAGC	3 cut(s)	96, 281, 284
LweI	GCATC	3 cut(s)	152, 645, 739
MaeI	CTAG	2 cut(s)	26, 81
MaeII	ACGT	1 cut(s)	196
MaeIII	GTNAC	2 cut(s)	546, 689
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MboII	GAAGA	2 cut(s)	326, 419
MflI	RGATCY	1 cut(s)	22
MhlI	GDGCHC	1 cut(s)	8
MmeI	TCCRAC	1 cut(s)	399
MnlI	CCTC	9 cut(s)	20, 87, 360, 410, 427, 430, 474, 785, 872
MseI	TTAA	8 cut(s)	68, 123, 141, 380, 570, 600, 737, 759
MslI	CAYNNNNRTG	2 cut(s)	653, 782
MspA1I	CMGCKG	1 cut(s)	863
MspCI	CTTAAG	1 cut(s)	379
MspI	CCGG	1 cut(s)	184
MspR9I	CCNGG	1 cut(s)	184
MvnI	CGCG	1 cut(s)	42
MwoI	GCNNNNNNNGC	1 cut(s)	39
NciI	CCSGG	1 cut(s)	184
NdeII	GATC	1 cut(s)	22
NlaIII	CATG	3 cut(s)	37, 206, 269
NlaIV	GGNNCC	1 cut(s)	362
NmeAIII	GCCGAG	2 cut(s)	197, 902
NmuCI	GTSAC	1 cut(s)	546
NspI	RCATGY	1 cut(s)	269
PaeI	GCATGC	1 cut(s)	269
PfeI	GAWTC	5 cut(s)	37, 280, 448, 824, 857
PkrI	GCNGC	4 cut(s)	86, 271, 274, 865
PsiI	TTATAA	1 cut(s)	537
PspN4I	GGNNCC	1 cut(s)	362
PspPI	GGNCC	1 cut(s)	361
PsuI	RGATCY	1 cut(s)	22
RsaI	GTAC	2 cut(s)	215, 850
RsaNI	GTAC	2 cut(s)	214, 849
RseI	CAYNNNNRTG	2 cut(s)	653, 782
SaqAI	TTAA	8 cut(s)	68, 123, 141, 380, 570, 600, 737, 759
SatI	GCNGC	4 cut(s)	85, 270, 273, 864
Sau3AI	GATC	1 cut(s)	22
Sau96I	GGNCC	1 cut(s)	361
ScrFI	CCNGG	1 cut(s)	184
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	3 cut(s)	152, 645, 739
SfcI	CTRYAG	1 cut(s)	828
SinI	GGWCC	1 cut(s)	361
SmiMI	CAYNNNNRTG	2 cut(s)	653, 782
SmlI	CTYRAG	2 cut(s)	379, 401
SmoI	CTYRAG	2 cut(s)	379, 401
SphI	GCATGC	1 cut(s)	269
SsiI	CCGC	4 cut(s)	42, 248, 355, 863
SspI	AATATT	1 cut(s)	259
SspMI	CTAG	2 cut(s)	26, 81
StyD4I	CCNGG	1 cut(s)	182
TaaI	ACNGT	3 cut(s)	218, 476, 558
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	3 cut(s)	193, 451, 747
TauI	GCSGC	1 cut(s)	866
TfiI	GAWTC	5 cut(s)	37, 280, 448, 824, 857
Tru1I	TTAA	8 cut(s)	68, 123, 141, 380, 570, 600, 737, 759
Tru9I	TTAA	8 cut(s)	68, 123, 141, 380, 570, 600, 737, 759
TscAI	CASTG	3 cut(s)	292, 703, 826
TseFI	GTSAC	1 cut(s)	546
TseI	GCWGC	3 cut(s)	84, 269, 272
Tsp45I	GTSAC	1 cut(s)	546
TspDTI	ATGAA	3 cut(s)	50, 568, 607
TspGWI	ACGGA	2 cut(s)	335, 612
TspRI	CASTG	3 cut(s)	292, 703, 826
Vha464I	CTTAAG	1 cut(s)	379
VpaK11BI	GGWCC	1 cut(s)	361
XapI	RAATTY	3 cut(s)	464, 663, 733
XceI	RCATGY	1 cut(s)	269
XmiI	GTMKAC	1 cut(s)	395
XspI	CTAG	2 cut(s)	26, 81
ZraI	GACGTC	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.