Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1086452 .. 1087253

Gene Structure 802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G010700.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGGTTTTGAAGCCAACCGAGTCGTCTTGCAAGAGAGAGCACACCTCTGGTTTGGTTTGTTGCCTTCTCTCTTCTTCTCTCTCGATCTCTTCCCCTCTGCCATATCTTTAGGTCGACACGACGATGTCGTTACACAGACACTCCTATCTCATCCTCCTCCCAACTTCATCAGCCAACTCAGCACCAAGGCCCTGAGGAACAGCAACAACATCGACGCCGCACAGATCGTTGCAAGTTCCAATCGATCTGGCCAAGCTTTCAACTCATTTGAAAGAGGCCTTGTTCTTGAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0001887 GO:0003674 GO:0003824 GO:0003962 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048037 GO:0050662 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00450 ko00920 ko01100 ko01110 ko01130 ko01230 map00270 map00450 map00920 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Cys_Met_Meta_PP

Protein Analysis

99

Amino Acids

10.84

Weight (kDa)

6.24

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	115
AciI	CCGC	1 cut(s)	219
AcoI	YGGCCR	1 cut(s)	250
AcyI	GRCGYC	1 cut(s)	216
AgsI	TTSAA	3 cut(s)	11, 262, 272
AluBI	AGCT	1 cut(s)	257
AluI	AGCT	1 cut(s)	257
Alw21I	GWGCWC	1 cut(s)	43
AoxI	GGCC	3 cut(s)	189, 250, 277
AspS9I	GGNCC	1 cut(s)	190
AxyI	CCTNAGG	1 cut(s)	194
BalI	TGGCCA	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	43
BcgI	CGANNNNNNTGC	2 cut(s)	193, 227
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	190
BplI	GAGNNNNNCTC	2 cut(s)	30, 62
Bsa29I	ATCGAT	1 cut(s)	244
BsaHI	GRCGYC	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	186
BsaXI	ACNNNNNCTCC	2 cut(s)	126, 156
Bse21I	CCTNAGG	1 cut(s)	194
BseCI	ATCGAT	1 cut(s)	244
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	1 cut(s)	151
BseMII	CTCAG	2 cut(s)	185, 193
BseRI	GAGGAG	1 cut(s)	147
BshFI	GGCC	3 cut(s)	191, 252, 279
BshVI	ATCGAT	1 cut(s)	244
BsiHKAI	GWGCWC	1 cut(s)	43
BsnI	GGCC	3 cut(s)	191, 252, 279
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp143I	GATC	3 cut(s)	85, 225, 245
BspACI	CCGC	1 cut(s)	219
BspANI	GGCC	3 cut(s)	191, 252, 279
BspCNI	CTCAG	2 cut(s)	186, 192
BspDI	ATCGAT	1 cut(s)	244
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	3 cut(s)	85, 225, 245
BssNI	GRCGYC	1 cut(s)	216
BssT1I	CCWWGG	1 cut(s)	186
Bst6I	CTCTTC	2 cut(s)	77, 95
BstACI	GRCGYC	1 cut(s)	216
BstDEI	CTNAG	2 cut(s)	179, 194
BstF5I	GGATG	1 cut(s)	151
BstKTI	GATC	3 cut(s)	88, 228, 248
BstMBI	GATC	3 cut(s)	85, 225, 245
BstMWI	GCNNNNNNNGC	1 cut(s)	180
Bsu15I	ATCGAT	1 cut(s)	244
Bsu36I	CCTNAGG	1 cut(s)	194
BsuRI	GGCC	3 cut(s)	191, 252, 279
BsuTUI	ATCGAT	1 cut(s)	244
BtsCI	GGATG	1 cut(s)	151
Cfr13I	GGNCC	1 cut(s)	190
ClaI	ATCGAT	1 cut(s)	244
CseI	GACGC	1 cut(s)	224
CviJI	RGCY	6 cut(s)	14, 174, 191, 252, 257, 279
CviKI_1	RGCY	6 cut(s)	14, 174, 191, 252, 257, 279
DdeI	CTNAG	2 cut(s)	179, 194
DpnI	GATC	3 cut(s)	87, 227, 247
DpnII	GATC	3 cut(s)	85, 225, 245
EaeI	YGGCCR	1 cut(s)	250
Eam1104I	CTCTTC	2 cut(s)	77, 95
EarI	CTCTTC	2 cut(s)	77, 95
Eco130I	CCWWGG	1 cut(s)	186
Eco147I	AGGCCT	1 cut(s)	279
Eco81I	CCTNAGG	1 cut(s)	194
EcoO109I	RGGNCCY	1 cut(s)	190
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
FaiI	YATR	1 cut(s)	104
FblI	GTMKAC	1 cut(s)	115
Fnu4HI	GCNGC	1 cut(s)	219
FokI	GGATG	1 cut(s)	138
Fsp4HI	GCNGC	1 cut(s)	219
GluI	GCNGC	1 cut(s)	219
HaeIII	GGCC	3 cut(s)	191, 252, 279
HgaI	GACGC	1 cut(s)	224
Hin1I	GRCGYC	1 cut(s)	216
HincII	GTYRAC	1 cut(s)	116
HindII	GTYRAC	1 cut(s)	116
HindIII	AAGCTT	1 cut(s)	255
HinfI	GANTC	1 cut(s)	21
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188III	TCNNGA	2 cut(s)	83, 287
Hpy8I	GTNNAC	1 cut(s)	116
Hpy99I	CGWCG	2 cut(s)	125, 218
HpyAV	CCTTC	1 cut(s)	75
HpyCH4V	TGCA	2 cut(s)	31, 233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	180
HpyF3I	CTNAG	2 cut(s)	179, 194
Hsp92I	GRCGYC	1 cut(s)	216
Kzo9I	GATC	3 cut(s)	85, 225, 245
LpnPI	CCDG	3 cut(s)	34, 206, 234
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	3 cut(s)	87, 227, 247
MboI	GATC	3 cut(s)	85, 225, 245
MboII	GAAGA	3 cut(s)	64, 67, 82
MhlI	GDGCHC	1 cut(s)	43
MlsI	TGGCCA	1 cut(s)	252
MluNI	TGGCCA	1 cut(s)	252
MlyI	GAGTC	1 cut(s)	30
MnlI	CCTC	6 cut(s)	56, 106, 165, 168, 189, 269
Mox20I	TGGCCA	1 cut(s)	252
MscI	TGGCCA	1 cut(s)	252
MslI	CAYNNNNRTG	1 cut(s)	123
Msp20I	TGGCCA	1 cut(s)	252
MwoI	GCNNNNNNNGC	1 cut(s)	180
NdeII	GATC	3 cut(s)	85, 225, 245
PceI	AGGCCT	1 cut(s)	279
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PflFI	GACNNNGTC	1 cut(s)	125
PkrI	GCNGC	1 cut(s)	220
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
PspPI	GGNCC	1 cut(s)	190
PsyI	GACNNNGTC	1 cut(s)	125
RseI	CAYNNNNRTG	1 cut(s)	123
SalI	GTCGAC	1 cut(s)	114
SatI	GCNGC	1 cut(s)	219
Sau3AI	GATC	3 cut(s)	85, 225, 245
Sau96I	GGNCC	1 cut(s)	190
SchI	GAGTC	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	43
SetI	ASST	3 cut(s)	48, 115, 259
SmiMI	CAYNNNNRTG	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
SseBI	AGGCCT	1 cut(s)	279
SsiI	CCGC	1 cut(s)	219
StuI	AGGCCT	1 cut(s)	279
StyI	CCWWGG	1 cut(s)	186
TaqI	TCGA	4 cut(s)	84, 115, 213, 244
TauI	GCSGC	1 cut(s)	221
TspDTI	ATGAA	1 cut(s)	157
Tth111I	GACNNNGTC	1 cut(s)	125
XmiI	GTMKAC	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.