Prupe.5G018800_v2.0.a1

Nucleolar protein 56-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
N/A
Physical Location & Seq
Forward (+)
2061002 .. 2065319
4318 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G018800.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 480 bp
ATGAGATTCAGAGAATGGTACTCTTGGCATTTTCCTGAACTGGGAAAAAGTGTCACTGACAATTATCTCTATGCTAAAGTGGCAAAAAGTATTGAAGACAAGTCAAGATTGTCCGAAGACAGACTTCCAGATTTAACTGATATTGTTGGGCATGAAGATAAGGCAAAGGAGATTATTGAAGCTGCCAAAGCATCCATGGGGCAGGATTTTTCTCTAGCTGACTTTGATATTGTTCAGCAATTTGCAGAGAGGTTGGCGGGTCTATCTGAGTACAGGAAAGGCATTTATGATTTCCCAGGTATTAAAATGAATGATATTGCACCCAATTTGGCCTCCTTAATTGGTGTAGTAGTTGGAGCTCGATTGATATCTCATGCCTGTAGTCTCACGAATTTGGCTCTCTTCTACCCTTCAGATCCCTGGCGCAGAGAAAGCTCTCTTCAGGGCATTAAAAACCAGGGGAAACACACCCAAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
NOP5NT Nop

Protein Analysis

160

Amino Acids

17.98

Weight (kDa)

6.08

Isoelectric Point (pI)

36.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 257
AclWI GGATC 1 cut(s) 410
AcsI RAATTY 1 cut(s) 391
AcuI CTGAAG 2 cut(s) 396, 425
AfaI GTAC 2 cut(s) 20, 272
AfiI CCNNNNNNNGG 1 cut(s) 41
AgsI TTSAA 2 cut(s) 95, 179
AjnI CCWGG 3 cut(s) 295, 419, 456
AluBI AGCT 4 cut(s) 182, 218, 359, 435
AluI AGCT 4 cut(s) 182, 218, 359, 435
Alw21I GWGCWC 1 cut(s) 361
Alw26I GTCTC 1 cut(s) 389
AlwI GGATC 1 cut(s) 410
AoxI GGCC 1 cut(s) 330
ApeKI GCWGC 1 cut(s) 182
ApoI RAATTY 1 cut(s) 391
AspLEI GCGC 1 cut(s) 426
BanII GRGCYC 1 cut(s) 361
BbsI GAAGAC 2 cut(s) 102, 123
Bbv12I GWGCWC 1 cut(s) 361
BbvI GCAGC 1 cut(s) 169
BciT130I CCWGG 3 cut(s) 297, 421, 458
BcoDI GTCTC 1 cut(s) 389
BfaI CTAG 1 cut(s) 215
BfmI CTRYAG 1 cut(s) 379
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
Bme1390I CCNGG 3 cut(s) 297, 421, 458
BmrFI CCNGG 3 cut(s) 297, 421, 458
BmrI ACTGGG 1 cut(s) 50
BmsI GCATC 1 cut(s) 200
BmuI ACTGGG 1 cut(s) 50
BpiI GAAGAC 2 cut(s) 102, 123
BsaBI GATNNNNATC 1 cut(s) 367
BsaJI CCNNGG 4 cut(s) 195, 295, 419, 457
Bsc4I CCNNNNNNNGG 1 cut(s) 41
Bse1I ACTGG 1 cut(s) 45
Bse8I GATNNNNATC 1 cut(s) 367
BseBI CCWGG 3 cut(s) 297, 421, 458
BseDI CCNNGG 4 cut(s) 195, 295, 419, 457
BseGI GGATG 1 cut(s) 191
BseJI GATNNNNATC 1 cut(s) 367
BseLI CCNNNNNNNGG 1 cut(s) 41
BseMII CTCAG 1 cut(s) 258
BseNI ACTGG 1 cut(s) 45
BseXI GCAGC 1 cut(s) 169
BshFI GGCC 1 cut(s) 332
BsiHKAI GWGCWC 1 cut(s) 361
BslI CCNNNNNNNGG 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 389
BsnI GGCC 1 cut(s) 332
Bsp1286I GDGCHC 1 cut(s) 361
Bsp143I GATC 1 cut(s) 415
Bsp19I CCATGG 1 cut(s) 195
BspACI CCGC 1 cut(s) 257
BspANI GGCC 1 cut(s) 332
BspCNI CTCAG 1 cut(s) 259
BspPI GGATC 1 cut(s) 410
BsrI ACTGG 1 cut(s) 45
BssECI CCNNGG 4 cut(s) 195, 295, 419, 457
BssMI GATC 1 cut(s) 415
BssT1I CCWWGG 1 cut(s) 195
Bst2UI CCWGG 3 cut(s) 297, 421, 458
Bst6I CTCTTC 2 cut(s) 407, 444
BstDEI CTNAG 1 cut(s) 267
BstDSI CCRYGG 1 cut(s) 195
BstF5I GGATG 1 cut(s) 191
BstHHI GCGC 1 cut(s) 426
BstKTI GATC 1 cut(s) 418
BstMAI GTCTC 1 cut(s) 389
BstMBI GATC 1 cut(s) 415
BstMWI GCNNNNNNNGC 3 cut(s) 80, 188, 432
BstNI CCWGG 3 cut(s) 297, 421, 458
BstSCI CCNGG 3 cut(s) 295, 419, 456
BstSFI CTRYAG 1 cut(s) 379
BstV1I GCAGC 1 cut(s) 169
BstV2I GAAGAC 2 cut(s) 102, 123
BstX2I RGATCY 1 cut(s) 415
BstYI RGATCY 1 cut(s) 415
BsuRI GGCC 1 cut(s) 332
BtgI CCRYGG 1 cut(s) 195
BtsCI GGATG 1 cut(s) 191
BtsIMutI CAGTG 1 cut(s) 54
CfoI GCGC 1 cut(s) 426
Csp6I GTAC 2 cut(s) 19, 271
CviAII CATG 3 cut(s) 152, 196, 374
CviJI RGCY 6 cut(s) 182, 218, 332, 359, 398, 435
CviKI_1 RGCY 6 cut(s) 182, 218, 332, 359, 398, 435
CviQI GTAC 2 cut(s) 19, 271
DdeI CTNAG 1 cut(s) 267
DpnI GATC 1 cut(s) 417
DpnII GATC 1 cut(s) 415
Eam1104I CTCTTC 2 cut(s) 407, 444
EarI CTCTTC 2 cut(s) 407, 444
Ecl136II GAGCTC 1 cut(s) 359
Eco130I CCWWGG 1 cut(s) 195
Eco24I GRGCYC 1 cut(s) 361
Eco32I GATATC 1 cut(s) 369
Eco53kI GAGCTC 1 cut(s) 359
Eco57I CTGAAG 2 cut(s) 396, 425
EcoICRI GAGCTC 1 cut(s) 359
EcoRII CCWGG 3 cut(s) 295, 419, 456
EcoRV GATATC 1 cut(s) 369
EcoT14I CCWWGG 1 cut(s) 195
EcoT38I GRGCYC 1 cut(s) 361
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 3 cut(s) 155, 199, 377
FaiI YATR 6 cut(s) 72, 153, 197, 288, 375, 478
FalI AAGNNNNNCTT 2 cut(s) 108, 140
FatI CATG 3 cut(s) 151, 195, 373
FauI CCCGC 1 cut(s) 250
Fnu4HI GCNGC 1 cut(s) 183
FokI GGATG 1 cut(s) 178
FriOI GRGCYC 1 cut(s) 361
Fsp4HI GCNGC 1 cut(s) 183
FspBI CTAG 1 cut(s) 215
GlaI GCGC 1 cut(s) 425
GluI GCNGC 1 cut(s) 183
HaeIII GGCC 1 cut(s) 332
HhaI GCGC 1 cut(s) 426
Hin1II CATG 3 cut(s) 155, 199, 377
Hin6I GCGC 1 cut(s) 424
HinP1I GCGC 1 cut(s) 424
HinfI GANTC 1 cut(s) 6
Hpy188I TCNGA 4 cut(s) 11, 115, 268, 415
Hpy188III TCNNGA 4 cut(s) 35, 105, 128, 388
HpyAV CCTTC 1 cut(s) 420
HpyCH4V TGCA 2 cut(s) 245, 320
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 188, 432
HpyF3I CTNAG 1 cut(s) 267
Hsp92II CATG 3 cut(s) 155, 199, 377
HspAI GCGC 1 cut(s) 424
Kzo9I GATC 1 cut(s) 415
LmnI GCTCC 1 cut(s) 356
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 1 cut(s) 200
MaeI CTAG 1 cut(s) 215
MaeIII GTNAC 1 cut(s) 52
MalI GATC 1 cut(s) 417
MboI GATC 1 cut(s) 415
MboII GAAGA 5 cut(s) 107, 128, 167, 394, 431
MflI RGATCY 1 cut(s) 415
MhlI GDGCHC 1 cut(s) 361
MluCI AATT 5 cut(s) 61, 239, 325, 339, 391
MmeI TCCRAC 1 cut(s) 334
MnlI CCTC 2 cut(s) 243, 343
MseI TTAA 4 cut(s) 134, 303, 338, 450
MspR9I CCNGG 3 cut(s) 297, 421, 458
MvaI CCWGG 3 cut(s) 297, 421, 458
MwoI GCNNNNNNNGC 3 cut(s) 80, 188, 432
NcoI CCATGG 1 cut(s) 195
NdeII GATC 1 cut(s) 415
NlaIII CATG 3 cut(s) 155, 199, 377
NmuCI GTSAC 1 cut(s) 52
PfeI GAWTC 1 cut(s) 6
PkrI GCNGC 1 cut(s) 184
Psp124BI GAGCTC 1 cut(s) 361
Psp6I CCWGG 3 cut(s) 295, 419, 456
PspGI CCWGG 3 cut(s) 295, 419, 456
PsuI RGATCY 1 cut(s) 415
RsaI GTAC 2 cut(s) 20, 272
RsaNI GTAC 2 cut(s) 19, 271
SacI GAGCTC 1 cut(s) 361
SaqAI TTAA 4 cut(s) 134, 303, 338, 450
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 1 cut(s) 415
ScrFI CCNGG 3 cut(s) 297, 421, 458
SduI GDGCHC 1 cut(s) 361
SetI ASST 6 cut(s) 184, 220, 254, 301, 361, 437
SfaNI GCATC 1 cut(s) 200
SfcI CTRYAG 1 cut(s) 379
Sse9I AATT 5 cut(s) 61, 239, 325, 339, 391
SsiI CCGC 1 cut(s) 257
SspMI CTAG 1 cut(s) 215
SstI GAGCTC 1 cut(s) 361
StyD4I CCNGG 3 cut(s) 295, 419, 456
StyI CCWWGG 1 cut(s) 195
TaqI TCGA 1 cut(s) 361
TasI AATT 5 cut(s) 61, 239, 325, 339, 391
TatI WGTACW 1 cut(s) 270
TfiI GAWTC 1 cut(s) 6
Tru1I TTAA 4 cut(s) 134, 303, 338, 450
Tru9I TTAA 4 cut(s) 134, 303, 338, 450
TscAI CASTG 1 cut(s) 61
TseFI GTSAC 1 cut(s) 52
TseI GCWGC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 2 cut(s) 168, 323
TspRI CASTG 1 cut(s) 61
XapI RAATTY 1 cut(s) 391
XcmI CCANNNNNNNNNTGG 1 cut(s) 193
XspI CTAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.