Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

3514067 .. 3517925

Gene Structure 3859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G030200.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

CCTGAAGGAGGATATGGGTCCCTTTCTTTAGACTACTTCACTTTTTCATCCAGCATTGCAGACCATCTGCGAGCAGCATCTCTTGTGATCAGTCATGCAGGGTCACGGAGCATGTTTGAGACATTGCGGCTTGGTAAGCCCTTAATTGTGGTGGTGAATGAAGATCTGATGGACAACCATCAAAGTGAGTTGGCAGAAGAACTAGCAGAGAGGAAGCATTTATACTATGCTCGCCCACAGACACTTTGTCGAACTATAGCAAATATGAATTTGGATTACCTCATTCCATATCCAGGTGATGCCACACCAGTTGCCAAGCTTATCAATAGGTTTCTTGGTTTTTCAGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006488 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0019538 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0043541 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C

Protein Analysis

118

Amino Acids

13.05

Weight (kDa)

5.24

Isoelectric Point (pI)

39.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	127
AcsI	RAATTY	1 cut(s)	268
AcuI	CTGAAG	1 cut(s)	24
AfiI	CCNNNNNNNGG	2 cut(s)	8, 293
AhdI	GACNNNNNGTC	1 cut(s)	246
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	1 cut(s)	319
AluI	AGCT	1 cut(s)	319
Alw26I	GTCTC	1 cut(s)	113
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	1 cut(s)	268
AspS9I	GGNCC	1 cut(s)	18
AsuHPI	GGTGA	2 cut(s)	166, 308
AvaII	GGWCC	1 cut(s)	18
BarI	GAAGNNNNNNTAC	2 cut(s)	206, 238
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	3 cut(s)	72, 163, 186
BciT130I	CCWGG	1 cut(s)	294
BclI	TGATCA	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	1 cut(s)	203
BfmI	CTRYAG	1 cut(s)	255
BglII	AGATCT	1 cut(s)	163
BisI	GCNGC	2 cut(s)	75, 128
BlsI	GCNGC	2 cut(s)	76, 129
Bme1390I	CCNGG	1 cut(s)	294
Bme18I	GGWCC	1 cut(s)	18
BmeRI	GACNNNNNGTC	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	18
BmiI	GGNNCC	2 cut(s)	19, 20
BmrFI	CCNGG	1 cut(s)	294
BmsI	GCATC	2 cut(s)	86, 289
Bsc4I	CCNNNNNNNGG	2 cut(s)	8, 293
Bse1I	ACTGG	1 cut(s)	308
Bse3DI	GCAATG	2 cut(s)	54, 122
BseBI	CCWGG	1 cut(s)	294
BseGI	GGATG	1 cut(s)	47
BseLI	CCNNNNNNNGG	2 cut(s)	8, 293
BseMI	GCAATG	2 cut(s)	54, 122
BseNI	ACTGG	1 cut(s)	308
BseXI	GCAGC	1 cut(s)	86
BslFI	GGGAC	1 cut(s)	4
BslI	CCNNNNNNNGG	2 cut(s)	8, 293
BsmAI	GTCTC	1 cut(s)	113
BsmFI	GGGAC	1 cut(s)	4
Bsp143I	GATC	2 cut(s)	87, 163
BspACI	CCGC	1 cut(s)	127
BspLI	GGNNCC	2 cut(s)	19, 20
BsrDI	GCAATG	2 cut(s)	54, 122
BsrI	ACTGG	1 cut(s)	308
BssMI	GATC	2 cut(s)	87, 163
Bst2UI	CCWGG	1 cut(s)	294
BstC8I	GCNNGC	2 cut(s)	72, 232
BstENI	CCTNNNNNAGG	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	47
BstKTI	GATC	2 cut(s)	90, 166
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	2 cut(s)	87, 163
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BstNI	CCWGG	1 cut(s)	294
BstNSI	RCATGY	1 cut(s)	115
BstSCI	CCNGG	1 cut(s)	292
BstSFI	CTRYAG	1 cut(s)	255
BstV1I	GCAGC	1 cut(s)	86
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BtsCI	GGATG	1 cut(s)	47
Cac8I	GCNNGC	2 cut(s)	72, 232
Cfr13I	GGNCC	1 cut(s)	18
CspCI	CAANNNNNGTGG	2 cut(s)	292, 327
CviAII	CATG	2 cut(s)	95, 112
CviJI	RGCY	3 cut(s)	130, 139, 319
CviKI_1	RGCY	3 cut(s)	130, 139, 319
DpnI	GATC	2 cut(s)	89, 165
DpnII	GATC	2 cut(s)	87, 163
DriI	GACNNNNNGTC	1 cut(s)	246
Eam1105I	GACNNNNNGTC	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	18
Eco57I	CTGAAG	1 cut(s)	24
EcoNI	CCTNNNNNAGG	1 cut(s)	6
EcoO109I	RGGNCCY	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	292
FaeI	CATG	2 cut(s)	98, 115
FaiI	YATR	8 cut(s)	15, 96, 113, 223, 228, 257, 266, 289
FaqI	GGGAC	1 cut(s)	4
FatI	CATG	2 cut(s)	94, 111
FbaI	TGATCA	1 cut(s)	87
Fnu4HI	GCNGC	2 cut(s)	75, 128
FokI	GGATG	1 cut(s)	34
Fsp4HI	GCNGC	2 cut(s)	75, 128
FspBI	CTAG	1 cut(s)	203
GluI	GCNGC	2 cut(s)	75, 128
Hin1II	CATG	2 cut(s)	98, 115
HindIII	AAGCTT	1 cut(s)	317
HphI	GGTGA	2 cut(s)	166, 308
Hpy188I	TCNGA	2 cut(s)	168, 346
HpyCH4V	TGCA	2 cut(s)	59, 98
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
Hsp92II	CATG	2 cut(s)	98, 115
KflI	GGGWCCC	1 cut(s)	18
Ksp22I	TGATCA	1 cut(s)	87
Kzo9I	GATC	2 cut(s)	87, 163
LmnI	GCTCC	1 cut(s)	108
LpnPI	CCDG	6 cut(s)	15, 64, 84, 279, 306, 321
Lsp1109I	GCAGC	1 cut(s)	86
LweI	GCATC	2 cut(s)	86, 289
MaeI	CTAG	1 cut(s)	203
MaeIII	GTNAC	1 cut(s)	102
MalI	GATC	2 cut(s)	89, 165
MboI	GATC	2 cut(s)	87, 163
MboII	GAAGA	2 cut(s)	173, 209
MflI	RGATCY	1 cut(s)	163
MluCI	AATT	2 cut(s)	144, 268
MnlI	CCTC	2 cut(s)	204, 290
MseI	TTAA	1 cut(s)	143
MslI	CAYNNNNRTG	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	1 cut(s)	136
NdeII	GATC	2 cut(s)	87, 163
NlaIII	CATG	2 cut(s)	98, 115
NlaIV	GGNNCC	2 cut(s)	19, 20
NmuCI	GTSAC	1 cut(s)	102
NspI	RCATGY	1 cut(s)	115
PkrI	GCNGC	2 cut(s)	76, 129
PpuMI	RGGWCCY	1 cut(s)	18
Psp5II	RGGWCCY	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	2 cut(s)	19, 20
PspPI	GGNCC	1 cut(s)	18
PspPPI	RGGWCCY	1 cut(s)	18
PsuI	RGATCY	1 cut(s)	163
RseI	CAYNNNNRTG	1 cut(s)	183
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	2 cut(s)	75, 128
Sau3AI	GATC	2 cut(s)	87, 163
Sau96I	GGNCC	1 cut(s)	18
ScrFI	CCNGG	1 cut(s)	294
SetI	ASST	4 cut(s)	282, 298, 321, 332
SfaNI	GCATC	2 cut(s)	86, 289
SfcI	CTRYAG	1 cut(s)	255
SinI	GGWCC	1 cut(s)	18
SmiMI	CAYNNNNRTG	1 cut(s)	183
Sse9I	AATT	2 cut(s)	144, 268
SsiI	CCGC	1 cut(s)	127
SspMI	CTAG	1 cut(s)	203
StyD4I	CCNGG	1 cut(s)	292
TaqI	TCGA	1 cut(s)	250
TasI	AATT	2 cut(s)	144, 268
TauI	GCSGC	1 cut(s)	130
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TseFI	GTSAC	1 cut(s)	102
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	1 cut(s)	102
TspDTI	ATGAA	3 cut(s)	36, 174, 281
TspGWI	ACGGA	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	18
XagI	CCTNNNNNAGG	1 cut(s)	6
XapI	RAATTY	1 cut(s)	268
XceI	RCATGY	1 cut(s)	115
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.