Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

3720410 .. 3723723

Gene Structure 3314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G032600.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCGACCGAAGCACCAGAGCAAGCCCCGCCAGCTGATGGAATCCAATCTCTTTCAATTTCCGAGTCTCCACCATCCAGTTCCTCAAGTCCAACTATCCAAATGAGTTTGGAGGAGAAGTACCAGATGGTGAGGAGCGTGGCAGAGGAGTGTATTCAAGATGACGAGCTTCGGAATTTACTGGCTCATAAGCCCGAACCCATCTGCTATGATGGGTTTGAACCCTCCGGTCGAATGCACATTGCTCAGGGAGTTATGAAGACGATAAATGTGAACAAGATGACCTCTGCTGGCTGCAGAATAGAGACTGTTGGGCGCTACATGATAGAGATATGGAAGGCTGCTGGGATGAATTTGGACAATGGCAAAGTTGAGTTTGTGTGGTCTTCAGAGGAGATTAATGCGAGATCACATGAGTATTGGCCTCGTGTGATGGACATAGCTCGAAAGTATACAGTTAACAGGATGACTAGGTGTGGTCAGATTATGGGTCGAAATGAGCCAGGTGATATAAATGCATCCCAAATTCTCTACCCATGTATGCAATGTGCAGATATATTCTTCCTTCAGGCGGACATCTGTCAGATGGGAATGGATCAGCGTAAAGTAAATGTTCTTGCAAGAGAGTACTGTGATGACATCAAGAAGAAGAACAAGCCTATTATCTTGTCACACCACATGTTACCTGGTTTGAAGCAAGGGCAGGAGAAGATGTCTAAAAGTGATGTATCGTCCTCCATATTCATGGAAGATGAAGAGGCTGAAGTGAATTTGAAGATAAAGAAAGCGTACTGTCCTCCAAATGTTGTTGAAGGGAATCCATGTATGGAGTATGTGAGGTATCTCATCCTACCTTGGTTCAATGAGTTCATTGTAGAACGTTTTGAAAAGAACGGCGGAAATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004831 GO:0005488 GO:0005515 GO:0005524 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006437 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0031406 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0042803 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043177 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0046483 GO:0046983 GO:0071704 GO:0072545 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

303

Amino Acids

34.32

Weight (kDa)

5.44

Isoelectric Point (pI)

61.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	38
AccI	GTMKAC	1 cut(s)	452
AciI	CCGC	3 cut(s)	29, 572, 897
AclI	AACGTT	1 cut(s)	880
AclWI	GGATC	1 cut(s)	603
AcsI	RAATTY	4 cut(s)	175, 352, 525, 769
AcuI	CTGAAG	3 cut(s)	372, 551, 783
AfaI	GTAC	3 cut(s)	122, 629, 791
AfiI	CCNNNNNNNGG	2 cut(s)	38, 571
AflIII	ACRYGT	1 cut(s)	678
AgsI	TTSAA	8 cut(s)	57, 158, 221, 694, 775, 812, 862, 887
AjnI	CCWGG	2 cut(s)	502, 685
AluBI	AGCT	3 cut(s)	35, 169, 443
AluI	AGCT	3 cut(s)	35, 169, 443
Alw26I	GTCTC	2 cut(s)	72, 299
AlwI	GGATC	1 cut(s)	603
AoxI	GGCC	1 cut(s)	422
ApeKI	GCWGC	2 cut(s)	294, 341
ApoI	RAATTY	4 cut(s)	175, 352, 525, 769
AseI	ATTAAT	1 cut(s)	399
AspLEI	GCGC	1 cut(s)	318
AsuHPI	GGTGA	2 cut(s)	142, 518
BauI	CACGAG	1 cut(s)	426
BbsI	GAAGAC	2 cut(s)	266, 378
BbvI	GCAGC	2 cut(s)	281, 328
BccI	CCATC	7 cut(s)	32, 82, 121, 206, 209, 427, 580
BciT130I	CCWGG	2 cut(s)	504, 687
BcoDI	GTCTC	2 cut(s)	72, 299
BfaI	CTAG	1 cut(s)	471
BfmI	CTRYAG	1 cut(s)	295
BfoI	RGCGCY	1 cut(s)	319
BisI	GCNGC	2 cut(s)	295, 342
BlsI	GCNGC	2 cut(s)	296, 343
BmcAI	AGTACT	1 cut(s)	629
Bme1390I	CCNGG	2 cut(s)	504, 687
BmrFI	CCNGG	2 cut(s)	504, 687
BmsI	GCATC	1 cut(s)	527
BoxI	GACNNNNGTC	1 cut(s)	579
BpiI	GAAGAC	2 cut(s)	266, 378
Bpu10I	CCTNAGC	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	70
BsaJI	CCNNGG	1 cut(s)	854
BsaWI	WCCGGW	1 cut(s)	227
BsaXI	ACNNNNNCTCC	4 cut(s)	104, 134, 698, 728
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 571
Bse1I	ACTGG	2 cut(s)	78, 186
Bse3DI	GCAATG	2 cut(s)	240, 551
BseBI	CCWGG	2 cut(s)	504, 687
BseDI	CCNNGG	1 cut(s)	854
BseGI	GGATG	5 cut(s)	74, 354, 471, 518, 846
BseLI	CCNNNNNNNGG	2 cut(s)	38, 571
BseMI	GCAATG	2 cut(s)	240, 551
BseMII	CTCAG	1 cut(s)	260
BseNI	ACTGG	2 cut(s)	78, 186
BseRI	GAGGAG	4 cut(s)	128, 148, 161, 407
BseXI	GCAGC	2 cut(s)	281, 328
BseYI	CCCAGC	1 cut(s)	344
BsgI	GTGCAG	1 cut(s)	570
Bsh1285I	CGRYCG	2 cut(s)	9, 232
BshFI	GGCC	1 cut(s)	424
BsiEI	CGRYCG	2 cut(s)	9, 232
BsiSI	CCGG	1 cut(s)	228
BslI	CCNNNNNNNGG	2 cut(s)	38, 571
BsmAI	GTCTC	2 cut(s)	72, 299
BsmI	GAATGC	1 cut(s)	240
BsnI	GGCC	1 cut(s)	424
Bsp143I	GATC	2 cut(s)	407, 595
BspACI	CCGC	3 cut(s)	29, 572, 897
BspANI	GGCC	1 cut(s)	424
BspCNI	CTCAG	1 cut(s)	259
BspMAI	CTGCAG	1 cut(s)	299
BspPI	GGATC	1 cut(s)	603
BsrDI	GCAATG	2 cut(s)	240, 551
BsrI	ACTGG	2 cut(s)	78, 186
BssECI	CCNNGG	1 cut(s)	854
BssMI	GATC	2 cut(s)	407, 595
BssNAI	GTATAC	1 cut(s)	453
BssSI	CACGAG	1 cut(s)	426
BssT1I	CCWWGG	1 cut(s)	854
Bst1107I	GTATAC	1 cut(s)	453
Bst2BI	CACGAG	1 cut(s)	426
Bst2UI	CCWGG	2 cut(s)	504, 687
Bst4CI	ACNGT	4 cut(s)	310, 457, 632, 794
Bst6I	CTCTTC	1 cut(s)	750
BstC8I	GCNNGC	3 cut(s)	24, 33, 292
BstDEI	CTNAG	1 cut(s)	246
BstF5I	GGATG	5 cut(s)	74, 354, 471, 518, 846
BstH2I	RGCGCY	1 cut(s)	319
BstHHI	GCGC	1 cut(s)	318
BstKTI	GATC	2 cut(s)	410, 598
BstMAI	GTCTC	2 cut(s)	72, 299
BstMBI	GATC	2 cut(s)	407, 595
BstMCI	CGRYCG	2 cut(s)	9, 232
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 28, 32
BstNI	CCWGG	2 cut(s)	504, 687
BstNSI	RCATGY	1 cut(s)	682
BstPAI	GACNNNNGTC	1 cut(s)	579
BstSCI	CCNGG	2 cut(s)	502, 685
BstSFI	CTRYAG	1 cut(s)	295
BstV1I	GCAGC	2 cut(s)	281, 328
BstV2I	GAAGAC	2 cut(s)	266, 378
BstXI	CCANNNNNNTGG	1 cut(s)	745
BstZ17I	GTATAC	1 cut(s)	453
BsuRI	GGCC	1 cut(s)	424
BtsCI	GGATG	5 cut(s)	74, 354, 471, 518, 846
Cac8I	GCNNGC	3 cut(s)	24, 33, 292
CfoI	GCGC	1 cut(s)	318
CsiI	ACCWGGT	1 cut(s)	685
Csp6I	GTAC	3 cut(s)	121, 628, 790
CviAII	CATG	6 cut(s)	322, 413, 537, 679, 745, 822
CviQI	GTAC	3 cut(s)	121, 628, 790
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	2 cut(s)	409, 597
DpnII	GATC	2 cut(s)	407, 595
Eam1104I	CTCTTC	1 cut(s)	750
EarI	CTCTTC	1 cut(s)	750
EciI	GGCGGA	1 cut(s)	587
Eco130I	CCWWGG	1 cut(s)	854
Eco57I	CTGAAG	3 cut(s)	372, 551, 783
EcoRII	CCWGG	2 cut(s)	502, 685
EcoT14I	CCWWGG	1 cut(s)	854
EcoT22I	ATGCAT	1 cut(s)	520
ErhI	CCWWGG	1 cut(s)	854
FaeI	CATG	6 cut(s)	325, 416, 540, 682, 748, 825
FatI	CATG	6 cut(s)	321, 412, 536, 678, 744, 821
FauI	CCCGC	1 cut(s)	36
FblI	GTMKAC	1 cut(s)	452
Fnu4HI	GCNGC	2 cut(s)	295, 342
FokI	GGATG	5 cut(s)	61, 361, 478, 505, 833
Fsp4HI	GCNGC	2 cut(s)	295, 342
FspBI	CTAG	1 cut(s)	471
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	2 cut(s)	295, 342
GsaI	CCCAGC	1 cut(s)	348
HaeII	RGCGCY	1 cut(s)	319
HaeIII	GGCC	1 cut(s)	424
HapII	CCGG	1 cut(s)	228
HhaI	GCGC	1 cut(s)	318
Hin1II	CATG	6 cut(s)	325, 416, 540, 682, 748, 825
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HinfI	GANTC	3 cut(s)	42, 65, 817
HpaI	GTTAAC	1 cut(s)	460
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	2 cut(s)	142, 518
Hpy166II	GTNNAC	3 cut(s)	274, 453, 460
Hpy188I	TCNGA	5 cut(s)	64, 174, 391, 483, 585
Hpy188III	TCNNGA	2 cut(s)	158, 643
Hpy8I	GTNNAC	3 cut(s)	274, 453, 460
HpyAV	CCTTC	3 cut(s)	331, 575, 806
HpyCH4III	ACNGT	4 cut(s)	310, 457, 632, 794
HpyCH4IV	ACGT	1 cut(s)	880
HpyCH4V	TGCA	6 cut(s)	238, 297, 518, 544, 551, 620
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 28, 32
HpyF3I	CTNAG	1 cut(s)	246
HpySE526I	ACGT	1 cut(s)	880
Hsp92II	CATG	6 cut(s)	325, 416, 540, 682, 748, 825
HspAI	GCGC	1 cut(s)	316
KspAI	GTTAAC	1 cut(s)	460
Kzo9I	GATC	2 cut(s)	407, 595
LmnI	GCTCC	1 cut(s)	135
Lsp1109I	GCAGC	2 cut(s)	281, 328
LweI	GCATC	1 cut(s)	527
MabI	ACCWGGT	1 cut(s)	685
MaeI	CTAG	1 cut(s)	471
MaeII	ACGT	1 cut(s)	880
MaeIII	GTNAC	2 cut(s)	669, 681
MalI	GATC	2 cut(s)	409, 597
MboI	GATC	2 cut(s)	407, 595
MboII	GAAGA	9 cut(s)	271, 378, 553, 658, 661, 721, 761, 767, 787
MluCI	AATT	5 cut(s)	57, 175, 352, 525, 769
MlyI	GAGTC	1 cut(s)	74
MmeI	TCCRAC	1 cut(s)	116
Mph1103I	ATGCAT	1 cut(s)	520
MseI	TTAA	2 cut(s)	399, 459
MslI	CAYNNNNRTG	1 cut(s)	743
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	2 cut(s)	504, 687
Mva1269I	GAATGC	1 cut(s)	240
MvaI	CCWGG	2 cut(s)	504, 687
MwoI	GCNNNNNNNGC	3 cut(s)	11, 28, 32
NdeII	GATC	2 cut(s)	407, 595
NlaIII	CATG	6 cut(s)	325, 416, 540, 682, 748, 825
NmuCI	GTSAC	1 cut(s)	669
NsiI	ATGCAT	1 cut(s)	520
NspI	RCATGY	1 cut(s)	682
PciI	ACATGT	1 cut(s)	678
PctI	GAATGC	1 cut(s)	240
PfeI	GAWTC	2 cut(s)	42, 817
PflMI	CCANNNNNTGG	1 cut(s)	38
PkrI	GCNGC	2 cut(s)	296, 343
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
PscI	ACATGT	1 cut(s)	678
PshAI	GACNNNNGTC	1 cut(s)	579
PshBI	ATTAAT	1 cut(s)	399
Psp1406I	AACGTT	1 cut(s)	880
Psp6I	CCWGG	2 cut(s)	502, 685
PspFI	CCCAGC	1 cut(s)	344
PspGI	CCWGG	2 cut(s)	502, 685
PstI	CTGCAG	1 cut(s)	299
PvuII	CAGCTG	1 cut(s)	35
RsaI	GTAC	3 cut(s)	122, 629, 791
RsaNI	GTAC	3 cut(s)	121, 628, 790
RseI	CAYNNNNRTG	1 cut(s)	743
SaqAI	TTAA	2 cut(s)	399, 459
SatI	GCNGC	2 cut(s)	295, 342
Sau3AI	GATC	2 cut(s)	407, 595
ScaI	AGTACT	1 cut(s)	629
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	2 cut(s)	504, 687
SexAI	ACCWGGT	1 cut(s)	685
SfaNI	GCATC	1 cut(s)	527
SfcI	CTRYAG	1 cut(s)	295
SmiMI	CAYNNNNRTG	1 cut(s)	743
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
Sse9I	AATT	5 cut(s)	57, 175, 352, 525, 769
SsiI	CCGC	3 cut(s)	29, 572, 897
SspMI	CTAG	1 cut(s)	471
StyD4I	CCNGG	2 cut(s)	502, 685
StyI	CCWWGG	1 cut(s)	854
TaaI	ACNGT	4 cut(s)	310, 457, 632, 794
TaiI	ACGT	1 cut(s)	883
TaqI	TCGA	3 cut(s)	232, 445, 493
TaqII	GACCGA	1 cut(s)	23
TasI	AATT	5 cut(s)	57, 175, 352, 525, 769
TatI	WGTACW	1 cut(s)	627
TfiI	GAWTC	2 cut(s)	42, 817
Tru1I	TTAA	2 cut(s)	399, 459
Tru9I	TTAA	2 cut(s)	399, 459
TseFI	GTSAC	1 cut(s)	669
TseI	GCWGC	2 cut(s)	294, 341
Tsp45I	GTSAC	1 cut(s)	669
TspDTI	ATGAA	5 cut(s)	272, 365, 733, 768, 859
Van91I	CCANNNNNTGG	1 cut(s)	38
VspI	ATTAAT	1 cut(s)	399
XapI	RAATTY	4 cut(s)	175, 352, 525, 769
XceI	RCATGY	1 cut(s)	682
XcmI	CCANNNNNNNNNTGG	1 cut(s)	683
XmiI	GTMKAC	1 cut(s)	452
XspI	CTAG	1 cut(s)	471
ZrmI	AGTACT	1 cut(s)	629
Zsp2I	ATGCAT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.