Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

3859016 .. 3860173

Gene Structure 1158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G033800.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGGGTTTTCTCTCACAGGATCTTTTCTCCCAAACACTAGAAAGCTCTCGTGGCCCAACACTCCATCTCATATATTCCGTGTGGCGCCATCTCTCCTCAGTGTCCAGGTACTCAGAGGACAGGGTTTGACACTTACTATTCCAGCTTGTAGGAGTACAAAGCCACTTGAGGAGAATGCCAAGTTAAAACTTGCTCAATTTTGCTTCCTGCGTCCTTTTGCCTTTGGCAATTTCTCCTCTTTTGTCTGTTCTAGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003883 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006241 GO:0006629 GO:0006644 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009147 GO:0009148 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009208 GO:0009209 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016874 GO:0016879 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019856 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0046036 GO:0046112 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

CTP_synth_N GATase

Protein Analysis

87

Amino Acids

9.46

Weight (kDa)

10.46

Isoelectric Point (pI)

40.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	85
AclWI	GGATC	1 cut(s)	28
AcyI	GRCGYC	1 cut(s)	86
AfaI	GTAC	2 cut(s)	111, 157
AjnI	CCWGG	1 cut(s)	105
AluBI	AGCT	2 cut(s)	46, 146
AluI	AGCT	2 cut(s)	46, 146
AlwI	GGATC	1 cut(s)	28
AoxI	GGCC	1 cut(s)	53
AspLEI	GCGC	1 cut(s)	88
AspS9I	GGNCC	1 cut(s)	54
BanI	GGYRCC	1 cut(s)	85
BauI	CACGAG	1 cut(s)	49
BccI	CCATC	2 cut(s)	73, 97
BciT130I	CCWGG	1 cut(s)	107
BfaI	CTAG	2 cut(s)	39, 252
BfoI	RGCGCY	1 cut(s)	89
Bme1390I	CCNGG	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	54
BmiI	GGNNCC	1 cut(s)	87
BmrFI	CCNGG	1 cut(s)	107
BpuEI	CTTGAG	1 cut(s)	188
BsaHI	GRCGYC	1 cut(s)	86
BseBI	CCWGG	1 cut(s)	107
BseMII	CTCAG	2 cut(s)	112, 127
BseRI	GAGGAG	3 cut(s)	86, 185, 226
BshFI	GGCC	1 cut(s)	55
BshNI	GGYRCC	1 cut(s)	85
BsmI	GAATGC	1 cut(s)	181
BsnI	GGCC	1 cut(s)	55
Bsp143I	GATC	1 cut(s)	20
BspANI	GGCC	1 cut(s)	55
BspCNI	CTCAG	2 cut(s)	111, 126
BspLI	GGNNCC	1 cut(s)	87
BspPI	GGATC	1 cut(s)	28
BspT107I	GGYRCC	1 cut(s)	85
BssMI	GATC	1 cut(s)	20
BssNI	GRCGYC	1 cut(s)	86
BssSI	CACGAG	1 cut(s)	49
Bst2BI	CACGAG	1 cut(s)	49
Bst2UI	CCWGG	1 cut(s)	107
BstACI	GRCGYC	1 cut(s)	86
BstDEI	CTNAG	2 cut(s)	98, 113
BstH2I	RGCGCY	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	88
BstKTI	GATC	1 cut(s)	23
BstMBI	GATC	1 cut(s)	20
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstNI	CCWGG	1 cut(s)	107
BstSCI	CCNGG	1 cut(s)	105
BstX2I	RGATCY	1 cut(s)	20
BstYI	RGATCY	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	106
CfoI	GCGC	1 cut(s)	88
Cfr13I	GGNCC	1 cut(s)	54
CseI	GACGC	1 cut(s)	200
Csp6I	GTAC	2 cut(s)	110, 156
CviJI	RGCY	4 cut(s)	46, 55, 146, 163
CviKI_1	RGCY	4 cut(s)	46, 55, 146, 163
CviQI	GTAC	2 cut(s)	110, 156
DdeI	CTNAG	2 cut(s)	98, 113
DinI	GGCGCC	1 cut(s)	87
DpnI	GATC	1 cut(s)	22
DpnII	GATC	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	105
EgeI	GGCGCC	1 cut(s)	87
EheI	GGCGCC	1 cut(s)	87
FaiI	YATR	2 cut(s)	72, 74
FspBI	CTAG	2 cut(s)	39, 252
GlaI	GCGC	1 cut(s)	87
HaeII	RGCGCY	1 cut(s)	89
HaeIII	GGCC	1 cut(s)	55
HgaI	GACGC	1 cut(s)	200
HhaI	GCGC	1 cut(s)	88
Hin1I	GRCGYC	1 cut(s)	86
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
Hpy188I	TCNGA	1 cut(s)	116
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
HpyF3I	CTNAG	2 cut(s)	98, 113
Hsp92I	GRCGYC	1 cut(s)	86
HspAI	GCGC	1 cut(s)	86
KasI	GGCGCC	1 cut(s)	85
Kzo9I	GATC	1 cut(s)	20
LpnPI	CCDG	6 cut(s)	3, 92, 107, 119, 156, 221
MaeI	CTAG	2 cut(s)	39, 252
MalI	GATC	1 cut(s)	22
MboI	GATC	1 cut(s)	20
MflI	RGATCY	1 cut(s)	20
MluCI	AATT	2 cut(s)	197, 229
Mly113I	GGCGCC	1 cut(s)	86
MnlI	CCTC	4 cut(s)	107, 110, 163, 247
MseI	TTAA	2 cut(s)	185, 259
MspR9I	CCNGG	1 cut(s)	107
Mva1269I	GAATGC	1 cut(s)	181
MvaI	CCWGG	1 cut(s)	107
MwoI	GCNNNNNNNGC	1 cut(s)	52
NarI	GGCGCC	1 cut(s)	86
NdeII	GATC	1 cut(s)	20
NlaIV	GGNNCC	1 cut(s)	87
PctI	GAATGC	1 cut(s)	181
PluTI	GGCGCC	1 cut(s)	89
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	87
PspPI	GGNCC	1 cut(s)	54
PsuI	RGATCY	1 cut(s)	20
RsaI	GTAC	2 cut(s)	111, 157
RsaNI	GTAC	2 cut(s)	110, 156
SaqAI	TTAA	2 cut(s)	185, 259
Sau3AI	GATC	1 cut(s)	20
Sau96I	GGNCC	1 cut(s)	54
ScrFI	CCNGG	1 cut(s)	107
SetI	ASST	3 cut(s)	48, 111, 148
SfoI	GGCGCC	1 cut(s)	87
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	2 cut(s)	197, 229
SspDI	GGCGCC	1 cut(s)	85
SspMI	CTAG	2 cut(s)	39, 252
StyD4I	CCNGG	1 cut(s)	105
TasI	AATT	2 cut(s)	197, 229
TatI	WGTACW	1 cut(s)	155
Tru1I	TTAA	2 cut(s)	185, 259
Tru9I	TTAA	2 cut(s)	185, 259
TscAI	CASTG	1 cut(s)	106
TspGWI	ACGGA	1 cut(s)	68
TspRI	CASTG	1 cut(s)	106
XspI	CTAG	2 cut(s)	39, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.