Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

4313445 .. 4321409

Gene Structure 7965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G038400.1_v2.0.a1.CDS.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGTTTCGGACAATTTTCGACGCCAATGCCGGAGAGGGTTTGGGCCAGCCAACTCCTGATTCCTCAGAGAAGGTCAACATCTCCCTAGTCTCCCTTCTCAAAATGCTCAATCACGATAGAGCCGGGGTCCCTTTGGAGGTCATGGGCTTGTTGCTCGGAAGCTTCCCCGACGAATACACAACTCATGTTGTGGACGTCGTTGCGATGCCGCAGCGTGGTACTGGTGTCAGTGTCGAGGCCATAGATCATGTCTTCCAGACTGATATGCTCGATATGCGTAAGCAAACTCAACGACATGAGATGGTCGTAGGCTGGTACCATTCGCATCCTGGATTTGGCTGTTGGTTATATGGCGTGGACATGACTACGCAACAGGGATTTGAAGCCTTAAATCGACGTGCTGTGGCTGTGGTGGTGGACCCCATTCAGAGTGTCAAGGGTAAGGTGGTTATCGATGCTTTCCGCCTTATTAACCCAAATACTGCATTGATCCATGGGTTAAACCGGAATTATTACTCCCTAGCAGTAAATTTCAGGATGAATGGAGTTGAGGAGAAAATGTTGCTTAACCTTCATAAGAAGAAATGGACTGATGGGCTGACGATGAGGCAATTTGATGCTCATTCAAAAACAAGCGAGCAGACTCTTCAGAAGATGTCCAACTTAGCTATTAAGTACAATAATGCACTGCAAGAGGATGGCGATGCACAGCCGGAGAAGCTTGCAATTGCAAATGTGGGAAGGGCAGATGCCAAGAAACACCTGGAAGAACATGTCTACAACATGATGTCCTCAAACATAGCCCAGACCACCTTGGGAACCGTACTCGACACAGTTGCGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

282

Amino Acids

31.34

Weight (kDa)

6.25

Isoelectric Point (pI)

34.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	198
Acc65I	GGTACC	1 cut(s)	315
AccB1I	GGYRCC	1 cut(s)	315
AccI	GTMKAC	1 cut(s)	777
AciI	CCGC	2 cut(s)	209, 463
AclWI	GGATC	1 cut(s)	484
AcsI	RAATTY	1 cut(s)	529
AcuI	CTGAAG	1 cut(s)	632
AcyI	GRCGYC	2 cut(s)	21, 195
AfaI	GTAC	4 cut(s)	220, 317, 677, 825
AfiI	CCNNNNNNNGG	3 cut(s)	136, 215, 335
AflIII	ACRYGT	1 cut(s)	772
AgsI	TTSAA	2 cut(s)	383, 627
AjiI	CACGTC	1 cut(s)	398
AjnI	CCWGG	2 cut(s)	328, 762
AjuI	GAANNNNNNNTTGG	2 cut(s)	43, 75
AluBI	AGCT	3 cut(s)	162, 668, 721
AluI	AGCT	3 cut(s)	162, 668, 721
Alw26I	GTCTC	1 cut(s)	94
AlwI	GGATC	1 cut(s)	484
AoxI	GGCC	2 cut(s)	43, 237
ApeKI	GCWGC	1 cut(s)	211
ApoI	RAATTY	1 cut(s)	529
Asp718I	GGTACC	1 cut(s)	315
AspS9I	GGNCC	3 cut(s)	43, 127, 418
AsuC2I	CCSGG	1 cut(s)	124
AvaII	GGWCC	2 cut(s)	127, 418
BaeI	ACNNNNGTAYC	2 cut(s)	210, 243
BanI	GGYRCC	1 cut(s)	315
BbsI	GAAGAC	1 cut(s)	244
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	3 cut(s)	295, 587, 692
BcgI	CGANNNNNNTGC	3 cut(s)	8, 42, 818
BciT130I	CCWGG	2 cut(s)	330, 764
BcnI	CCSGG	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	94
BfaI	CTAG	3 cut(s)	86, 521, 844
BisI	GCNGC	2 cut(s)	209, 212
BlsI	GCNGC	2 cut(s)	210, 213
Bme1390I	CCNGG	3 cut(s)	124, 330, 764
Bme18I	GGWCC	2 cut(s)	127, 418
BmgBI	CACGTC	1 cut(s)	398
BmgT120I	GGNCC	3 cut(s)	43, 127, 418
BmiI	GGNNCC	5 cut(s)	128, 129, 317, 420, 820
BmrFI	CCNGG	3 cut(s)	124, 330, 764
BmsI	GCATC	6 cut(s)	195, 334, 445, 607, 694, 739
BpiI	GAAGAC	1 cut(s)	244
BpuMI	CCSGG	1 cut(s)	124
Bsa29I	ATCGAT	1 cut(s)	453
BsaHI	GRCGYC	2 cut(s)	21, 195
BsaJI	CCNNGG	3 cut(s)	123, 493, 813
BsaWI	WCCGGW	1 cut(s)	504
BsaXI	ACNNNNNCTCC	2 cut(s)	545, 575
Bsc4I	CCNNNNNNNGG	3 cut(s)	136, 215, 335
Bse1I	ACTGG	1 cut(s)	226
BseBI	CCWGG	2 cut(s)	330, 764
BseCI	ATCGAT	1 cut(s)	453
BseDI	CCNNGG	3 cut(s)	123, 493, 813
BseGI	GGATG	3 cut(s)	325, 543, 703
BseLI	CCNNNNNNNGG	3 cut(s)	136, 215, 335
BseMII	CTCAG	1 cut(s)	78
BseNI	ACTGG	1 cut(s)	226
BseRI	GAGGAG	1 cut(s)	566
BseXI	GCAGC	1 cut(s)	223
BshFI	GGCC	2 cut(s)	45, 239
BshNI	GGYRCC	1 cut(s)	315
BshVI	ATCGAT	1 cut(s)	453
BsiSI	CCGG	4 cut(s)	30, 123, 505, 713
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	3 cut(s)	136, 215, 335
BsmAI	GTCTC	1 cut(s)	94
BsmFI	GGGAC	1 cut(s)	113
BsnI	GGCC	2 cut(s)	45, 239
Bsp143I	GATC	2 cut(s)	244, 489
Bsp19I	CCATGG	1 cut(s)	493
BspACI	CCGC	2 cut(s)	209, 463
BspANI	GGCC	2 cut(s)	45, 239
BspCNI	CTCAG	1 cut(s)	77
BspDI	ATCGAT	1 cut(s)	453
BspLI	GGNNCC	5 cut(s)	128, 129, 317, 420, 820
BspPI	GGATC	1 cut(s)	484
BspT107I	GGYRCC	1 cut(s)	315
BsrI	ACTGG	1 cut(s)	226
BssECI	CCNNGG	3 cut(s)	123, 493, 813
BssMI	GATC	2 cut(s)	244, 489
BssNI	GRCGYC	2 cut(s)	21, 195
BssT1I	CCWWGG	2 cut(s)	493, 813
Bst2UI	CCWGG	2 cut(s)	330, 764
Bst4CI	ACNGT	2 cut(s)	823, 835
Bst6I	CTCTTC	1 cut(s)	651
BstACI	GRCGYC	2 cut(s)	21, 195
BstC8I	GCNNGC	3 cut(s)	47, 638, 723
BstDEI	CTNAG	2 cut(s)	64, 664
BstDSI	CCRYGG	1 cut(s)	493
BstF5I	GGATG	3 cut(s)	325, 543, 703
BstKTI	GATC	2 cut(s)	247, 492
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	2 cut(s)	244, 489
BstMWI	GCNNNNNNNGC	2 cut(s)	274, 718
BstNI	CCWGG	2 cut(s)	330, 764
BstNSI	RCATGY	1 cut(s)	776
BstSCI	CCNGG	3 cut(s)	122, 328, 762
BstV1I	GCAGC	1 cut(s)	223
BstV2I	GAAGAC	1 cut(s)	244
Bsu15I	ATCGAT	1 cut(s)	453
BsuRI	GGCC	2 cut(s)	45, 239
BsuTUI	ATCGAT	1 cut(s)	453
BtgI	CCRYGG	1 cut(s)	493
BtgZI	GCGATG	2 cut(s)	218, 717
BtrI	CACGTC	1 cut(s)	398
BtsCI	GGATG	3 cut(s)	325, 543, 703
BtsI	GCAGTG	1 cut(s)	686
BtsIMutI	CAGTG	2 cut(s)	235, 686
Cac8I	GCNNGC	3 cut(s)	47, 638, 723
Cfr13I	GGNCC	3 cut(s)	43, 127, 418
ClaI	ATCGAT	1 cut(s)	453
CseI	GACGC	1 cut(s)	29
Csp6I	GTAC	4 cut(s)	219, 316, 676, 824
CviAII	CATG	8 cut(s)	142, 185, 248, 296, 361, 494, 773, 784
CviQI	GTAC	4 cut(s)	219, 316, 676, 824
DdeI	CTNAG	2 cut(s)	64, 664
DpnI	GATC	2 cut(s)	246, 491
DpnII	GATC	2 cut(s)	244, 489
Eam1104I	CTCTTC	1 cut(s)	651
EarI	CTCTTC	1 cut(s)	651
EciI	GGCGGA	1 cut(s)	452
Eco130I	CCWWGG	2 cut(s)	493, 813
Eco47I	GGWCC	2 cut(s)	127, 418
Eco57I	CTGAAG	1 cut(s)	632
EcoO109I	RGGNCCY	1 cut(s)	127
EcoRII	CCWGG	2 cut(s)	328, 762
EcoT14I	CCWWGG	2 cut(s)	493, 813
ErhI	CCWWGG	2 cut(s)	493, 813
FaeI	CATG	8 cut(s)	145, 188, 251, 299, 364, 497, 776, 787
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	8 cut(s)	141, 184, 247, 295, 360, 493, 772, 783
FblI	GTMKAC	1 cut(s)	777
Fnu4HI	GCNGC	2 cut(s)	209, 212
FokI	GGATG	3 cut(s)	312, 550, 710
Fsp4HI	GCNGC	2 cut(s)	209, 212
FspBI	CTAG	3 cut(s)	86, 521, 844
GluI	GCNGC	2 cut(s)	209, 212
HaeIII	GGCC	2 cut(s)	45, 239
HapII	CCGG	4 cut(s)	30, 123, 505, 713
HgaI	GACGC	1 cut(s)	29
Hin1I	GRCGYC	2 cut(s)	21, 195
Hin1II	CATG	8 cut(s)	145, 188, 251, 299, 364, 497, 776, 787
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HindIII	AAGCTT	2 cut(s)	160, 719
HinfI	GANTC	2 cut(s)	59, 643
HpaII	CCGG	4 cut(s)	30, 123, 505, 713
Hpy166II	GTNNAC	5 cut(s)	76, 193, 358, 418, 778
Hpy188I	TCNGA	5 cut(s)	9, 67, 158, 429, 651
Hpy188III	TCNNGA	4 cut(s)	56, 113, 256, 535
Hpy8I	GTNNAC	5 cut(s)	76, 193, 358, 418, 778
Hpy99I	CGWCG	4 cut(s)	23, 173, 200, 399
HpyAV	CCTTC	4 cut(s)	64, 104, 581, 735
HpyCH4III	ACNGT	2 cut(s)	823, 835
HpyCH4IV	ACGT	2 cut(s)	195, 397
HpyCH4V	TGCA	6 cut(s)	485, 686, 691, 707, 725, 731
HpyF10VI	GCNNNNNNNGC	2 cut(s)	274, 718
HpyF3I	CTNAG	2 cut(s)	64, 664
HpySE526I	ACGT	2 cut(s)	195, 397
Hsp92I	GRCGYC	2 cut(s)	21, 195
Hsp92II	CATG	8 cut(s)	145, 188, 251, 299, 364, 497, 776, 787
KflI	GGGWCCC	1 cut(s)	127
KpnI	GGTACC	1 cut(s)	319
Kzo9I	GATC	2 cut(s)	244, 489
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	6 cut(s)	195, 334, 445, 607, 694, 739
MaeI	CTAG	3 cut(s)	86, 521, 844
MaeII	ACGT	2 cut(s)	195, 397
MalI	GATC	2 cut(s)	246, 491
MboI	GATC	2 cut(s)	244, 489
MboII	GAAGA	5 cut(s)	244, 592, 638, 664, 779
MfeI	CAATTG	1 cut(s)	726
MluCI	AATT	5 cut(s)	12, 508, 529, 611, 726
MlyI	GAGTC	1 cut(s)	637
MmeI	TCCRAC	1 cut(s)	684
MnlI	CCTC	8 cut(s)	28, 73, 130, 229, 544, 600, 688, 802
MseI	TTAA	5 cut(s)	389, 471, 500, 567, 672
MspI	CCGG	4 cut(s)	30, 123, 505, 713
MspR9I	CCNGG	3 cut(s)	124, 330, 764
MunI	CAATTG	1 cut(s)	726
MvaI	CCWGG	2 cut(s)	330, 764
MwoI	GCNNNNNNNGC	2 cut(s)	274, 718
NciI	CCSGG	1 cut(s)	124
NcoI	CCATGG	1 cut(s)	493
NdeII	GATC	2 cut(s)	244, 489
NlaIII	CATG	8 cut(s)	145, 188, 251, 299, 364, 497, 776, 787
NlaIV	GGNNCC	5 cut(s)	128, 129, 317, 420, 820
NspI	RCATGY	1 cut(s)	776
PciI	ACATGT	1 cut(s)	772
PfeI	GAWTC	1 cut(s)	59
PfoI	TCCNGGA	1 cut(s)	328
PkrI	GCNGC	2 cut(s)	210, 213
PleI	GAGTC	1 cut(s)	637
PpsI	GAGTC	1 cut(s)	637
PpuMI	RGGWCCY	1 cut(s)	127
PscI	ACATGT	1 cut(s)	772
Psp5II	RGGWCCY	1 cut(s)	127
Psp6I	CCWGG	2 cut(s)	328, 762
PspGI	CCWGG	2 cut(s)	328, 762
PspN4I	GGNNCC	5 cut(s)	128, 129, 317, 420, 820
PspPI	GGNCC	3 cut(s)	43, 127, 418
PspPPI	RGGWCCY	1 cut(s)	127
RsaI	GTAC	4 cut(s)	220, 317, 677, 825
RsaNI	GTAC	4 cut(s)	219, 316, 676, 824
SaqAI	TTAA	5 cut(s)	389, 471, 500, 567, 672
SatI	GCNGC	2 cut(s)	209, 212
Sau3AI	GATC	2 cut(s)	244, 489
Sau96I	GGNCC	3 cut(s)	43, 127, 418
SchI	GAGTC	1 cut(s)	637
ScrFI	CCNGG	3 cut(s)	124, 330, 764
SfaNI	GCATC	6 cut(s)	195, 334, 445, 607, 694, 739
SinI	GGWCC	2 cut(s)	127, 418
Sse9I	AATT	5 cut(s)	12, 508, 529, 611, 726
SsiI	CCGC	2 cut(s)	209, 463
SspMI	CTAG	3 cut(s)	86, 521, 844
StyD4I	CCNGG	3 cut(s)	122, 328, 762
StyI	CCWWGG	2 cut(s)	493, 813
TaaI	ACNGT	2 cut(s)	823, 835
TaiI	ACGT	2 cut(s)	198, 400
TaqI	TCGA	6 cut(s)	18, 234, 270, 394, 453, 828
TasI	AATT	5 cut(s)	12, 508, 529, 611, 726
TatI	WGTACW	1 cut(s)	675
TauI	GCSGC	1 cut(s)	211
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	5 cut(s)	389, 471, 500, 567, 672
Tru9I	TTAA	5 cut(s)	389, 471, 500, 567, 672
TscAI	CASTG	2 cut(s)	235, 693
TseI	GCWGC	1 cut(s)	211
TspDTI	ATGAA	2 cut(s)	554, 563
TspRI	CASTG	2 cut(s)	235, 693
VpaK11BI	GGWCC	2 cut(s)	127, 418
XapI	RAATTY	1 cut(s)	529
XceI	RCATGY	1 cut(s)	776
XcmI	CCANNNNNNNNNTGG	2 cut(s)	326, 760
XmiI	GTMKAC	1 cut(s)	777
XspI	CTAG	3 cut(s)	86, 521, 844
ZraI	GACGTC	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.