Prupe.5G038700_v2.0.a1

Reticulon-like protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
N/A
Physical Location & Seq
Reverse (-)
4334061 .. 4334586
526 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G038700.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 288 bp
ATGGTTGCAGATGTGGCTTATCATTTTCGTGATAGCATGTTGTCATGTAGAGTAAAGTTATGCAAATTTGTCAACAATGATAATAAGTCATTCTTGCAGACAGCTCACCAGATAACTTCGTATTTAAATCTTCTCCGAGTGGTGTTTTGTCTTTACAAGCTTTCAGCTTTGGGACGGTTGGTGTCAGGTCTTACAGTTGCCTATGCTGGATTATGCTTGTTTTGCCTTTATATCTTAGCCGAGAACAGTCAGTGCATGTTTATCTCGATTTCTGAGGAGAACGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

96

Amino Acids

10.77

Weight (kDa)

7.59

Isoelectric Point (pI)

40.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 65
AluBI AGCT 3 cut(s) 104, 160, 167
AluI AGCT 3 cut(s) 104, 160, 167
ApoI RAATTY 1 cut(s) 65
AsuHPI GGTGA 1 cut(s) 98
BseMII CTCAG 1 cut(s) 264
BslFI GGGAC 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 186
BspCNI CTCAG 1 cut(s) 265
Bst4CI ACNGT 3 cut(s) 177, 196, 248
BstDEI CTNAG 2 cut(s) 235, 273
BstMWI GCNNNNNNNGC 2 cut(s) 14, 222
BstNSI RCATGY 2 cut(s) 40, 259
BtsIMutI CAGTG 1 cut(s) 257
CviAII CATG 3 cut(s) 37, 45, 256
CviJI RGCY 5 cut(s) 17, 104, 160, 167, 239
CviKI_1 RGCY 5 cut(s) 17, 104, 160, 167, 239
DdeI CTNAG 2 cut(s) 235, 273
DraI TTTAAA 1 cut(s) 126
FaeI CATG 3 cut(s) 40, 48, 259
FaiI YATR 7 cut(s) 38, 46, 61, 204, 214, 231, 257
FalI AAGNNNNNCTT 2 cut(s) 77, 109
FaqI GGGAC 1 cut(s) 186
FatI CATG 3 cut(s) 36, 44, 255
Hin1II CATG 3 cut(s) 40, 48, 259
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HindIII AAGCTT 1 cut(s) 158
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 2 cut(s) 137, 274
Hpy188III TCNNGA 2 cut(s) 29, 265
Hpy8I GTNNAC 1 cut(s) 73
HpyCH4III ACNGT 3 cut(s) 177, 196, 248
HpyCH4V TGCA 4 cut(s) 8, 63, 97, 255
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 222
HpyF3I CTNAG 2 cut(s) 235, 273
Hsp92II CATG 3 cut(s) 40, 48, 259
LpnPI CCDG 3 cut(s) 122, 171, 192
MboII GAAGA 1 cut(s) 122
MluCI AATT 1 cut(s) 65
MnlI CCTC 1 cut(s) 268
MseI TTAA 1 cut(s) 125
MslI CAYNNNNRTG 1 cut(s) 27
MwoI GCNNNNNNNGC 2 cut(s) 14, 222
NlaIII CATG 3 cut(s) 40, 48, 259
NmeAIII GCCGAG 1 cut(s) 265
NspI RCATGY 2 cut(s) 40, 259
RseI CAYNNNNRTG 1 cut(s) 27
SaqAI TTAA 1 cut(s) 125
SetI ASST 4 cut(s) 106, 162, 169, 190
SmiI ATTTAAAT 1 cut(s) 126
SmiMI CAYNNNNRTG 1 cut(s) 27
Sse9I AATT 1 cut(s) 65
SwaI ATTTAAAT 1 cut(s) 126
TaaI ACNGT 3 cut(s) 177, 196, 248
TaqI TCGA 1 cut(s) 266
TasI AATT 1 cut(s) 65
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TscAI CASTG 1 cut(s) 257
TspRI CASTG 1 cut(s) 257
XapI RAATTY 1 cut(s) 65
XceI RCATGY 2 cut(s) 40, 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.