Prupe.5G042600_v2.0.a1

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
N/A
Physical Location & Seq
Forward (+)
4704001 .. 4705187
1187 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G042600.1_v2.0.a1.CDS.4

Sequence Viewer

Length: 834 bp
ATGGGTTTTGATAAGAAAAACTTTGACGTATGTTCTCTGTTAATACTGTACCTAGCAAACTCAAAGTCAGAGGCAATGTCTGAAGAACCCCCATCCCCATCCCCATCCCCATCCCCTGCTGCAACATCGATATTATCTGAGGAAAATCCTGCAAATGCTTACTCAAGCGATGAAGAGAAAGAGAGGCGTTTCACCAATTTCAAGAAGTCGTTCAACTTTGTGAAGAACTTCATGAAGGGACCAAATAAATTATATATTGTAGGGTTAAACCTATTCGCTAATGTGGACGAGGTTGAAATGGAAGCTTTCCATTACAGAGTACCCATCATGGACAATTTGCCACTTGTTATCTCCTCCCTTAAGGGCGTCCACAAGATATTGGTGGAAGCCCTTCATGCTATAACTTTCAATTTACAACAACCTTCGATGATGTCCGTGCAACAACTGATTGACTGCAATTCTTCCAACTACGGGTGCTGGGGTCTAAACACCAAACAAAACTACCCATACTGGGGTATAGAAGGAACATGTGACGTTATTAAGGAAAAAGGAGATGCTCTCAATATCGATACCTATGCAATAGTGACAACGAGGATTGAAGACAAGCTGGCCTACACTCTCTACGAACAGCCAATGGTGGTCAGTGTCAATGCCCACAACTCCAAATTTGAAAAATACAAAGGTGGAATATTTCACGAGGAATGTATAATCAAGAACTCGTGGGGTGAAGGGGGATTTATGAAATTGTTGAAAAATGATGGCACTCTTGGCGGTCATTGTGGCATTGCGCTAGATGCTAGCTATCCTGCGCTCTATGAGGATTATGTTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

278

Amino Acids

31.05

Weight (kDa)

5.16

Isoelectric Point (pI)

48.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 771
AcsI RAATTY 1 cut(s) 665
AcuI CTGAAG 1 cut(s) 102
AcyI GRCGYC 1 cut(s) 366
AfaI GTAC 2 cut(s) 50, 321
AfiI CCNNNNNNNGG 3 cut(s) 471, 511, 512
AflII CTTAAG 1 cut(s) 359
AflIII ACRYGT 1 cut(s) 527
AgsI TTSAA 8 cut(s) 202, 214, 296, 409, 599, 671, 751, 830
AluBI AGCT 3 cut(s) 305, 607, 801
AluI AGCT 3 cut(s) 305, 607, 801
AoxI GGCC 1 cut(s) 609
ApeKI GCWGC 1 cut(s) 119
ApoI RAATTY 1 cut(s) 665
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
Asp700I GAANNNNTTC 3 cut(s) 209, 227, 390
AspLEI GCGC 2 cut(s) 790, 811
AspS9I GGNCC 1 cut(s) 239
AsuHPI GGTGA 2 cut(s) 184, 737
AsuNHI GCTAGC 1 cut(s) 797
AvaII GGWCC 1 cut(s) 239
BauI CACGAG 2 cut(s) 695, 718
BbsI GAAGAC 1 cut(s) 606
BbvI GCAGC 1 cut(s) 106
BccI CCATC 6 cut(s) 100, 106, 112, 118, 332, 752
BcgI CGANNNNNNTGC 2 cut(s) 557, 591
BfaI CTAG 3 cut(s) 53, 791, 798
BfrI CTTAAG 1 cut(s) 359
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme18I GGWCC 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 1 cut(s) 240
BmrI ACTGGG 1 cut(s) 520
BmsI GCATC 2 cut(s) 544, 784
BmtI GCTAGC 1 cut(s) 801
BmuI ACTGGG 1 cut(s) 520
BpiI GAAGAC 1 cut(s) 606
BplI GAGNNNNNCTC 2 cut(s) 543, 575
BpuEI CTTGAG 1 cut(s) 148
Bsa29I ATCGAT 2 cut(s) 128, 567
BsaHI GRCGYC 1 cut(s) 366
Bsc4I CCNNNNNNNGG 3 cut(s) 471, 511, 512
Bse1I ACTGG 1 cut(s) 515
Bse3DI GCAATG 2 cut(s) 81, 783
BseCI ATCGAT 2 cut(s) 128, 567
BseGI GGATG 4 cut(s) 92, 98, 104, 110
BseLI CCNNNNNNNGG 3 cut(s) 471, 511, 512
BseMI GCAATG 2 cut(s) 81, 783
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 515
BseRI GAGGAG 1 cut(s) 343
BseXI GCAGC 1 cut(s) 106
BseYI CCCAGC 1 cut(s) 477
BshFI GGCC 1 cut(s) 611
BshVI ATCGAT 2 cut(s) 128, 567
BslFI GGGAC 1 cut(s) 252
BslI CCNNNNNNNGG 3 cut(s) 471, 511, 512
BsmFI GGGAC 1 cut(s) 252
BsnI GGCC 1 cut(s) 611
BspACI CCGC 1 cut(s) 771
BspANI GGCC 1 cut(s) 611
BspCNI CTCAG 1 cut(s) 130
BspDI ATCGAT 2 cut(s) 128, 567
BspHI TCATGA 1 cut(s) 231
BspLI GGNNCC 1 cut(s) 240
BspOI GCTAGC 1 cut(s) 801
BspTI CTTAAG 1 cut(s) 359
BsrDI GCAATG 2 cut(s) 81, 783
BsrI ACTGG 1 cut(s) 515
BssNI GRCGYC 1 cut(s) 366
BssSI CACGAG 2 cut(s) 695, 718
Bst2BI CACGAG 2 cut(s) 695, 718
Bst4CI ACNGT 1 cut(s) 48
Bst6I CTCTTC 1 cut(s) 168
BstACI GRCGYC 1 cut(s) 366
BstAFI CTTAAG 1 cut(s) 359
BstC8I GCNNGC 2 cut(s) 609, 799
BstDEI CTNAG 1 cut(s) 138
BstF5I GGATG 4 cut(s) 92, 98, 104, 110
BstHHI GCGC 2 cut(s) 790, 811
BstMWI GCNNNNNNNGC 3 cut(s) 395, 768, 794
BstNSI RCATGY 1 cut(s) 531
BstV1I GCAGC 1 cut(s) 106
BstV2I GAAGAC 1 cut(s) 606
Bsu15I ATCGAT 2 cut(s) 128, 567
BsuRI GGCC 1 cut(s) 611
BsuTUI ATCGAT 2 cut(s) 128, 567
BtgZI GCGATG 1 cut(s) 183
BtsCI GGATG 4 cut(s) 92, 98, 104, 110
BtsIMutI CAGTG 1 cut(s) 649
Cac8I GCNNGC 2 cut(s) 609, 799
CciI TCATGA 1 cut(s) 231
CfoI GCGC 2 cut(s) 790, 811
Cfr13I GGNCC 1 cut(s) 239
ClaI ATCGAT 2 cut(s) 128, 567
CseI GACGC 1 cut(s) 355
Csp6I GTAC 2 cut(s) 49, 320
CviAII CATG 4 cut(s) 232, 328, 395, 528
CviJI RGCY 6 cut(s) 305, 389, 607, 611, 631, 801
CviKI_1 RGCY 6 cut(s) 305, 389, 607, 611, 631, 801
CviQI GTAC 2 cut(s) 49, 320
DdeI CTNAG 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 239
Eco57I CTGAAG 1 cut(s) 102
FaeI CATG 4 cut(s) 235, 331, 398, 531
FalI AAGNNNNNCTT 1 cut(s) 37
FaqI GGGAC 1 cut(s) 252
FatI CATG 4 cut(s) 231, 327, 394, 527
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 4 cut(s) 79, 85, 91, 97
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 3 cut(s) 53, 791, 798
GlaI GCGC 2 cut(s) 789, 810
GluI GCNGC 1 cut(s) 120
GsaI CCCAGC 1 cut(s) 481
HaeIII GGCC 1 cut(s) 611
HgaI GACGC 1 cut(s) 355
HhaI GCGC 2 cut(s) 790, 811
Hin1I GRCGYC 1 cut(s) 366
Hin1II CATG 4 cut(s) 235, 331, 398, 531
Hin6I GCGC 2 cut(s) 788, 809
HinP1I GCGC 2 cut(s) 788, 809
HindIII AAGCTT 1 cut(s) 303
HphI GGTGA 2 cut(s) 184, 737
Hpy166II GTNNAC 2 cut(s) 286, 370
Hpy188I TCNGA 3 cut(s) 70, 82, 139
Hpy188III TCNNGA 4 cut(s) 202, 232, 695, 712
Hpy8I GTNNAC 2 cut(s) 286, 370
HpyAV CCTTC 5 cut(s) 229, 401, 432, 515, 722
HpyCH4III ACNGT 1 cut(s) 48
HpyCH4IV ACGT 2 cut(s) 27, 534
HpyCH4V TGCA 5 cut(s) 122, 152, 439, 456, 578
HpyF10VI GCNNNNNNNGC 3 cut(s) 395, 768, 794
HpyF3I CTNAG 1 cut(s) 138
HpySE526I ACGT 2 cut(s) 27, 534
Hsp92I GRCGYC 1 cut(s) 366
Hsp92II CATG 4 cut(s) 235, 331, 398, 531
HspAI GCGC 2 cut(s) 788, 809
LpnPI CCDG 6 cut(s) 129, 162, 463, 496, 593, 819
Lsp1109I GCAGC 1 cut(s) 106
LweI GCATC 2 cut(s) 544, 784
MaeI CTAG 3 cut(s) 53, 791, 798
MaeII ACGT 2 cut(s) 27, 534
MaeIII GTNAC 2 cut(s) 530, 583
MboII GAAGA 5 cut(s) 95, 185, 235, 453, 611
MluCI AATT 7 cut(s) 196, 248, 334, 409, 457, 665, 743
MmeI TCCRAC 1 cut(s) 489
MnlI CCTC 8 cut(s) 64, 133, 177, 283, 364, 585, 691, 811
MroXI GAANNNNTTC 3 cut(s) 209, 227, 390
MseI TTAA 4 cut(s) 41, 266, 360, 540
MspCI CTTAAG 1 cut(s) 359
MwoI GCNNNNNNNGC 3 cut(s) 395, 768, 794
NheI GCTAGC 1 cut(s) 797
NlaIII CATG 4 cut(s) 235, 331, 398, 531
NlaIV GGNNCC 1 cut(s) 240
NmuCI GTSAC 2 cut(s) 530, 583
NspI RCATGY 1 cut(s) 531
PagI TCATGA 1 cut(s) 231
PciI ACATGT 1 cut(s) 527
PdmI GAANNNNTTC 3 cut(s) 209, 227, 390
PkrI GCNGC 1 cut(s) 121
PscI ACATGT 1 cut(s) 527
PspFI CCCAGC 1 cut(s) 477
PspN4I GGNNCC 1 cut(s) 240
PspPI GGNCC 1 cut(s) 239
RsaI GTAC 2 cut(s) 50, 321
RsaNI GTAC 2 cut(s) 49, 320
SaqAI TTAA 4 cut(s) 41, 266, 360, 540
SatI GCNGC 1 cut(s) 120
Sau96I GGNCC 1 cut(s) 239
SfaNI GCATC 2 cut(s) 544, 784
SinI GGWCC 1 cut(s) 239
SmlI CTYRAG 2 cut(s) 163, 359
SmoI CTYRAG 2 cut(s) 163, 359
Sse9I AATT 7 cut(s) 196, 248, 334, 409, 457, 665, 743
SsiI CCGC 1 cut(s) 771
SspI AATATT 1 cut(s) 690
SspMI CTAG 3 cut(s) 53, 791, 798
TaaI ACNGT 1 cut(s) 48
TaiI ACGT 2 cut(s) 30, 537
TaqI TCGA 3 cut(s) 128, 425, 567
TasI AATT 7 cut(s) 196, 248, 334, 409, 457, 665, 743
Tru1I TTAA 4 cut(s) 41, 266, 360, 540
Tru9I TTAA 4 cut(s) 41, 266, 360, 540
TscAI CASTG 1 cut(s) 649
TseFI GTSAC 2 cut(s) 530, 583
TseI GCWGC 1 cut(s) 119
Tsp45I GTSAC 2 cut(s) 530, 583
TspDTI ATGAA 5 cut(s) 186, 220, 248, 383, 755
TspGWI ACGGA 1 cut(s) 424
TspRI CASTG 1 cut(s) 649
Vha464I CTTAAG 1 cut(s) 359
VpaK11BI GGWCC 1 cut(s) 239
XapI RAATTY 1 cut(s) 665
XceI RCATGY 1 cut(s) 531
XmnI GAANNNNTTC 3 cut(s) 209, 227, 390
XspI CTAG 3 cut(s) 53, 791, 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.