Prupe.5G043800_v2.0.a1

atexp4,atexpa4,athexp alpha 1.6,expa4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
N/A
Physical Location & Seq
Reverse (-)
4829564 .. 4829911
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G043800.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 270 bp
ATGGGTGTGGTGAGTGTTTCTGCTTGCCTTGCCTCTCTACTCATCTCACTAATGTGGGTAGCTGAAGCAAGAATCCCAGGGGTGTACAGTGGGGGTGCATGGGAAGCAGCTCATGCCACCTTCTACGGAGGCTCTGATGCCTCTGGCACCATGGGTGGGGCTTGTGGATATGGAAATCTCTACAGCCAAGGCTATGGCGTGAGCACAGCTGCGCTGAGCACTGCCCTCTTCAACAATGGCCTCAGCTGCAGTGCCTGCTTTGAAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

90

Amino Acids

8.9

Weight (kDa)

4.4

Isoelectric Point (pI)

30.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 146
AcuI CTGAAG 1 cut(s) 84
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 156
AgsI TTSAA 2 cut(s) 232, 263
AjnI CCWGG 1 cut(s) 76
AleI CACNNNNGTG 1 cut(s) 52
AluBI AGCT 4 cut(s) 62, 110, 209, 246
AluI AGCT 4 cut(s) 62, 110, 209, 246
Alw21I GWGCWC 2 cut(s) 206, 221
AlwNI CAGNNNCTG 1 cut(s) 255
AoxI GGCC 1 cut(s) 238
ApeKI GCWGC 3 cut(s) 107, 209, 246
AspLEI GCGC 1 cut(s) 214
AsuHPI GGTGA 1 cut(s) 22
BanI GGYRCC 1 cut(s) 146
Bbv12I GWGCWC 2 cut(s) 206, 221
BbvCI CCTCAGC 1 cut(s) 242
BbvI GCAGC 3 cut(s) 119, 196, 233
BciT130I CCWGG 1 cut(s) 78
BfaI CTAG 1 cut(s) 268
BfmI CTRYAG 2 cut(s) 181, 247
BisI GCNGC 3 cut(s) 108, 210, 247
BlpI GCTNAGC 1 cut(s) 215
BlsI GCNGC 3 cut(s) 109, 211, 248
Bme1390I CCNGG 1 cut(s) 78
BmiI GGNNCC 1 cut(s) 148
BmrFI CCNGG 1 cut(s) 78
BmsI GCATC 1 cut(s) 127
Bpu10I CCTNAGC 1 cut(s) 242
Bpu1102I GCTNAGC 1 cut(s) 215
BsaJI CCNNGG 4 cut(s) 76, 77, 150, 187
Bsc4I CCNNNNNNNGG 1 cut(s) 156
BseBI CCWGG 1 cut(s) 78
BseDI CCNNGG 4 cut(s) 76, 77, 150, 187
BseLI CCNNNNNNNGG 1 cut(s) 156
BseMII CTCAG 2 cut(s) 206, 256
BseXI GCAGC 3 cut(s) 119, 196, 233
BshFI GGCC 1 cut(s) 240
BshNI GGYRCC 1 cut(s) 146
BsiHKAI GWGCWC 2 cut(s) 206, 221
BslI CCNNNNNNNGG 1 cut(s) 156
BsnI GGCC 1 cut(s) 240
Bsp1286I GDGCHC 2 cut(s) 206, 221
Bsp1407I TGTACA 1 cut(s) 84
Bsp1720I GCTNAGC 1 cut(s) 215
Bsp19I CCATGG 1 cut(s) 150
BspANI GGCC 1 cut(s) 240
BspCNI CTCAG 2 cut(s) 207, 255
BspLI GGNNCC 1 cut(s) 148
BspMAI CTGCAG 1 cut(s) 251
BspT107I GGYRCC 1 cut(s) 146
BsrGI TGTACA 1 cut(s) 84
BssECI CCNNGG 4 cut(s) 76, 77, 150, 187
BssT1I CCWWGG 2 cut(s) 150, 187
Bst2UI CCWGG 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 89
Bst6I CTCTTC 1 cut(s) 233
BstAPI GCANNNNNTGC 2 cut(s) 113, 255
BstAUI TGTACA 1 cut(s) 84
BstC8I GCNNGC 2 cut(s) 25, 256
BstDEI CTNAG 2 cut(s) 215, 242
BstDSI CCRYGG 1 cut(s) 150
BstHHI GCGC 1 cut(s) 214
BstMWI GCNNNNNNNGC 5 cut(s) 29, 104, 113, 246, 255
BstNI CCWGG 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 76
BstSFI CTRYAG 2 cut(s) 181, 247
BstV1I GCAGC 3 cut(s) 119, 196, 233
BstXI CCANNNNNNTGG 1 cut(s) 194
BsuRI GGCC 1 cut(s) 240
BtgI CCRYGG 1 cut(s) 150
BtsI GCAGTG 2 cut(s) 219, 256
BtsIMutI CAGTG 3 cut(s) 94, 219, 256
Cac8I GCNNGC 2 cut(s) 25, 256
CaiI CAGNNNCTG 1 cut(s) 255
CfoI GCGC 1 cut(s) 214
Csp6I GTAC 1 cut(s) 85
CviAII CATG 3 cut(s) 99, 113, 151
CviJI RGCY 9 cut(s) 62, 110, 132, 161, 186, 192, 209, 240, 246
CviKI_1 RGCY 9 cut(s) 62, 110, 132, 161, 186, 192, 209, 240, 246
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 2 cut(s) 215, 242
Eam1104I CTCTTC 1 cut(s) 233
EarI CTCTTC 1 cut(s) 233
Eco130I CCWWGG 2 cut(s) 150, 187
Eco57I CTGAAG 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 76
EcoT14I CCWWGG 2 cut(s) 150, 187
ErhI CCWWGG 2 cut(s) 150, 187
FaeI CATG 3 cut(s) 102, 116, 154
FaiI YATR 5 cut(s) 100, 114, 152, 171, 195
FatI CATG 3 cut(s) 98, 112, 150
Fnu4HI GCNGC 3 cut(s) 108, 210, 247
Fsp4HI GCNGC 3 cut(s) 108, 210, 247
FspBI CTAG 1 cut(s) 268
GlaI GCGC 1 cut(s) 213
GluI GCNGC 3 cut(s) 108, 210, 247
HaeIII GGCC 1 cut(s) 240
HhaI GCGC 1 cut(s) 214
Hin1II CATG 3 cut(s) 102, 116, 154
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HinfI GANTC 1 cut(s) 72
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 1 cut(s) 136
Hpy8I GTNNAC 1 cut(s) 85
HpyAV CCTTC 1 cut(s) 130
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4V TGCA 2 cut(s) 98, 249
HpyF10VI GCNNNNNNNGC 5 cut(s) 29, 104, 113, 246, 255
HpyF3I CTNAG 2 cut(s) 215, 242
Hsp92II CATG 3 cut(s) 102, 116, 154
HspAI GCGC 1 cut(s) 212
LpnPI CCDG 3 cut(s) 63, 90, 129
Lsp1109I GCAGC 3 cut(s) 119, 196, 233
LweI GCATC 1 cut(s) 127
MaeI CTAG 1 cut(s) 268
MboII GAAGA 1 cut(s) 220
MhlI GDGCHC 2 cut(s) 206, 221
MnlI CCTC 5 cut(s) 43, 122, 151, 236, 251
MslI CAYNNNNRTG 1 cut(s) 52
MspA1I CMGCKG 2 cut(s) 209, 246
MspR9I CCNGG 1 cut(s) 78
MvaI CCWGG 1 cut(s) 78
MwoI GCNNNNNNNGC 5 cut(s) 29, 104, 113, 246, 255
NcoI CCATGG 1 cut(s) 150
NlaIII CATG 3 cut(s) 102, 116, 154
NlaIV GGNNCC 1 cut(s) 148
OliI CACNNNNGTG 1 cut(s) 52
PasI CCCWGGG 1 cut(s) 77
PfeI GAWTC 1 cut(s) 72
PkrI GCNGC 3 cut(s) 109, 211, 248
Psp6I CCWGG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 76
PspN4I GGNNCC 1 cut(s) 148
PstI CTGCAG 1 cut(s) 251
PstNI CAGNNNCTG 1 cut(s) 255
PvuII CAGCTG 2 cut(s) 209, 246
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
RseI CAYNNNNRTG 1 cut(s) 52
SatI GCNGC 3 cut(s) 108, 210, 247
ScrFI CCNGG 1 cut(s) 78
SduI GDGCHC 2 cut(s) 206, 221
SetI ASST 5 cut(s) 64, 112, 122, 211, 248
SfaNI GCATC 1 cut(s) 127
SfcI CTRYAG 2 cut(s) 181, 247
SmiMI CAYNNNNRTG 1 cut(s) 52
SspMI CTAG 1 cut(s) 268
StyD4I CCNGG 1 cut(s) 76
StyI CCWWGG 2 cut(s) 150, 187
TaaI ACNGT 1 cut(s) 89
TatI WGTACW 1 cut(s) 84
TfiI GAWTC 1 cut(s) 72
TscAI CASTG 3 cut(s) 94, 226, 256
TseI GCWGC 3 cut(s) 107, 209, 246
TspGWI ACGGA 1 cut(s) 141
TspRI CASTG 3 cut(s) 94, 226, 256
XspI CTAG 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.