Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

4955071 .. 4956509

Gene Structure 1439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G045400.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGTTCCCCCAAGGCACTGGTGCAAATATTGACGAACTTGCATCAGTTATTCCGATTTCAGATGGCTCTGTCAGGACAGCATTGGATACTGGTTGTGGTGTTGCAAGTTGGGGTGCATACTTGCTAAAGAGAAATGTATTAGCCATGTCCTTTACACCACGGGATAATCATGAAGCACAATTACAGTTTGCATTGGAGCGAGGTGTACCTGCCGTTATCGGTGTGCTTGGATCAATTCGTCTCCCATACCCATCTAGGGCCTTTGATATCGCGGTGTTTAATTCCATGGACTGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009505 GO:0012505 GO:0016020 GO:0016740 GO:0016741 GO:0030312 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

100

Amino Acids

10.59

Weight (kDa)

5.63

Isoelectric Point (pI)

32.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	217
AccII	CGCG	1 cut(s)	272
AciI	CCGC	1 cut(s)	272
AclWI	GGATC	1 cut(s)	238
AfaI	GTAC	1 cut(s)	207
AfiI	CCNNNNNNNGG	1 cut(s)	256
Alw26I	GTCTC	1 cut(s)	245
AlwI	GGATC	1 cut(s)	238
AoxI	GGCC	1 cut(s)	258
AspS9I	GGNCC	1 cut(s)	258
BarI	GAAGNNNNNNTAC	2 cut(s)	165, 197
BccI	CCATC	2 cut(s)	56, 259
BceAI	ACGGC	1 cut(s)	197
BciVI	GTATCC	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	1 cut(s)	255
BfuAI	ACCTGC	1 cut(s)	217
BfuI	GTATCC	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	258
BmsI	GCATC	1 cut(s)	50
BsaJI	CCNNGG	3 cut(s)	10, 158, 285
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
Bse1I	ACTGG	2 cut(s)	22, 94
BseDI	CCNNGG	3 cut(s)	10, 158, 285
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseNI	ACTGG	2 cut(s)	22, 94
Bsh1236I	CGCG	1 cut(s)	272
BshFI	GGCC	1 cut(s)	260
BslI	CCNNNNNNNGG	1 cut(s)	256
BsmAI	GTCTC	1 cut(s)	245
BsmBI	CGTCTC	1 cut(s)	245
BsnI	GGCC	1 cut(s)	260
Bsp143I	GATC	1 cut(s)	230
Bsp19I	CCATGG	1 cut(s)	285
BspACI	CCGC	1 cut(s)	272
BspANI	GGCC	1 cut(s)	260
BspFNI	CGCG	1 cut(s)	272
BspHI	TCATGA	1 cut(s)	169
BspMI	ACCTGC	1 cut(s)	217
BspPI	GGATC	1 cut(s)	238
BsrI	ACTGG	2 cut(s)	22, 94
BssECI	CCNNGG	3 cut(s)	10, 158, 285
BssMI	GATC	1 cut(s)	230
BssT1I	CCWWGG	2 cut(s)	10, 285
Bst4CI	ACNGT	1 cut(s)	186
BstDSI	CCRYGG	2 cut(s)	158, 285
BstFNI	CGCG	1 cut(s)	272
BstKTI	GATC	1 cut(s)	233
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	1 cut(s)	230
BstUI	CGCG	1 cut(s)	272
BstXI	CCANNNNNNTGG	1 cut(s)	17
BsuI	GTATCC	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	260
BtgI	CCRYGG	2 cut(s)	158, 285
BtsIMutI	CAGTG	1 cut(s)	15
BveI	ACCTGC	1 cut(s)	217
CciI	TCATGA	1 cut(s)	169
Cfr13I	GGNCC	1 cut(s)	258
Csp6I	GTAC	1 cut(s)	206
CviAII	CATG	3 cut(s)	145, 170, 286
CviJI	RGCY	3 cut(s)	66, 143, 260
CviKI_1	RGCY	3 cut(s)	66, 143, 260
CviQI	GTAC	1 cut(s)	206
DpnI	GATC	1 cut(s)	232
DpnII	GATC	1 cut(s)	230
Eco130I	CCWWGG	2 cut(s)	10, 285
Eco32I	GATATC	1 cut(s)	268
EcoO109I	RGGNCCY	1 cut(s)	258
EcoRV	GATATC	1 cut(s)	268
EcoT14I	CCWWGG	2 cut(s)	10, 285
ErhI	CCWWGG	2 cut(s)	10, 285
Esp3I	CGTCTC	1 cut(s)	245
FaeI	CATG	3 cut(s)	148, 173, 289
FaiI	YATR	5 cut(s)	118, 146, 171, 247, 287
FatI	CATG	3 cut(s)	144, 169, 285
FspBI	CTAG	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	260
Hin1II	CATG	3 cut(s)	148, 173, 289
Hpy166II	GTNNAC	1 cut(s)	206
Hpy188I	TCNGA	2 cut(s)	54, 61
Hpy188III	TCNNGA	2 cut(s)	73, 170
Hpy8I	GTNNAC	1 cut(s)	206
HpyCH4III	ACNGT	1 cut(s)	186
HpyCH4V	TGCA	6 cut(s)	23, 41, 104, 116, 191, 294
Hsp92II	CATG	3 cut(s)	148, 173, 289
Kzo9I	GATC	1 cut(s)	230
LmnI	GCTCC	1 cut(s)	196
LpnPI	CCDG	4 cut(s)	3, 58, 75, 222
LweI	GCATC	1 cut(s)	50
MaeI	CTAG	1 cut(s)	255
MalI	GATC	1 cut(s)	232
MboI	GATC	1 cut(s)	230
MluCI	AATT	3 cut(s)	179, 234, 280
MnlI	CCTC	1 cut(s)	194
MseI	TTAA	1 cut(s)	279
MvnI	CGCG	1 cut(s)	272
NcoI	CCATGG	1 cut(s)	285
NdeII	GATC	1 cut(s)	230
NlaIII	CATG	3 cut(s)	148, 173, 289
PagI	TCATGA	1 cut(s)	169
PspPI	GGNCC	1 cut(s)	258
RsaI	GTAC	1 cut(s)	207
RsaNI	GTAC	1 cut(s)	206
SaqAI	TTAA	1 cut(s)	279
Sau3AI	GATC	1 cut(s)	230
Sau96I	GGNCC	1 cut(s)	258
SetI	ASST	2 cut(s)	205, 211
SfaNI	GCATC	1 cut(s)	50
Sse9I	AATT	3 cut(s)	179, 234, 280
SsiI	CCGC	1 cut(s)	272
SspI	AATATT	1 cut(s)	28
SspMI	CTAG	1 cut(s)	255
StyI	CCWWGG	2 cut(s)	10, 285
TaaI	ACNGT	1 cut(s)	186
TasI	AATT	3 cut(s)	179, 234, 280
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TscAI	CASTG	1 cut(s)	22
TspDTI	ATGAA	1 cut(s)	186
TspRI	CASTG	1 cut(s)	22
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.