Prupe.5G045900_v2.0.a1

Involved in the biogenesis of the 60S ribosomal subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
N/A
Physical Location & Seq
Reverse (-)
4968367 .. 4969724
1358 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G045900.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 1200 bp
ATGGTGAAATATAACTTCAAGAAGATGACTGTTGTACCAAATGGGAAGGACTTCATTGACATAATCCTATCTCGCACCCCGAGGCAGACCCCAACTCTATATTCCACAAGGGTTATGCAATTTCCCGTCTCCGTTCTTTCTATATGCGTAAAGCTGGATGACATTCACCCTTTATATGGCAACCTTCATGTTCTCGACAACAAAGATCATTACAAGCTTGCACTTGGCCAAATCATTACTGCAAGGAACCTTATTGGAAAGATTTCTAAAGATTATGTGAAATTGTTAAAGTATAGTGATTCACTTTACCGATGCAAATGTCTCAAGGTCGCTGCTCTTGGCCGCATGTGCATGGTTATAAAGAGGATTGGTCCTAGTTTAGCTTACCTAGAACAACTTAGGCAACACATGGTGAGGCTACCTTCAATTGACCCTAATACCAGGACAATATTGATTTGTGGCTATCCGAACGTTGAAAAGAGCTCATTCATTAACAAGATCACTAGGGCTGATGTGGATGTCCAGCCCTATGCTTGTACCACCAAGTCACTCTTTGTGGGACATACATATTATAAATACTTGAGAGCTGCGGTATTGTTTTTCTTGGACATCTCGGGGTCTTGTGGGTACAGCATTGCCCAACAGGCAGCTCTTTTTCACAGTATTAAGTCTCTGTTTATGAACAAACCATTGATTATAGTCTGCAACAAAACTGATTTGCAAGCATTGGAGGATATATCTGAGGAAGACAAGAAGTTAGTCATGAAAGCTGAAGCTATGAAGACAGTGATTGGTCAAGGTGGTGAGGCTACCAATGATGAGGGGATACTCTTGACCATGAGCACTCTGACCGGGGAGGGGGTTATTGCTGTAAAGAATGCAACTTGTGAGAGGTTGTTGAATCAGAGAGTGGAATTCAAGATGAAATCCAAAAAGATAAATGATTGCTTAAATCGTTTTTATGTTGCAATGCCAAATCCATGTGACAATAAGGAAAGAGCCCAATGTATACCTCAGGCAGTTTTAGAAGCTAAGGCTAAGCAAGCAGCAGAAAAGGATTTGGAGAATGAGAATGGCGGTGCCGGTGTATACTCTGCTAGTTTGAAGAAGAATTATATCTTAGCTAATGATGAATGTAAAGAGGATCTCATGCCAGAAATTCTGGATGGGCACAACGTATACGGTATTGTTTTTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
MMR_HSR1 NOG1 NOGCT

Protein Analysis

400

Amino Acids

44.79

Weight (kDa)

8.97

Isoelectric Point (pI)

32.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 359, 573
AccB1I GGYRCC 1 cut(s) 1079
AccI GTMKAC 3 cut(s) 1009, 1089, 1179
AciI CCGC 3 cut(s) 343, 590, 1077
AclI AACGTT 1 cut(s) 471
AclWI GGATC 1 cut(s) 1152
AcoI YGGCCR 2 cut(s) 226, 340
AcsI RAATTY 2 cut(s) 914, 1158
AcuI CTGAAG 1 cut(s) 792
AdeI CACNNNGTG 1 cut(s) 412
AfaI GTAC 3 cut(s) 36, 538, 629
AfiI CCNNNNNNNGG 2 cut(s) 176, 858
AgsI TTSAA 6 cut(s) 19, 426, 476, 901, 919, 1105
AjnI CCWGG 1 cut(s) 440
AjuI GAANNNNNNNTTGG 2 cut(s) 85, 117
Alw21I GWGCWC 2 cut(s) 485, 845
Alw26I GTCTC 3 cut(s) 133, 326, 675
AlwI GGATC 1 cut(s) 1152
Ama87I CYCGRG 2 cut(s) 79, 613
AoxI GGCC 2 cut(s) 226, 340
ApeKI GCWGC 4 cut(s) 332, 587, 647, 1046
ApoI RAATTY 2 cut(s) 914, 1158
Asp700I GAANNNNTTC 2 cut(s) 50, 262
AspS9I GGNCC 1 cut(s) 371
AsuC2I CCSGG 1 cut(s) 853
AsuHPI GGTGA 4 cut(s) 16, 158, 424, 815
AvaI CYCGRG 2 cut(s) 79, 613
AvaII GGWCC 1 cut(s) 371
AxyI CCTNAGG 1 cut(s) 1014
BaeGI GKGCMC 1 cut(s) 1173
BaeI ACNNNNGTAYC 2 cut(s) 18, 51
BalI TGGCCA 1 cut(s) 228
BanI GGYRCC 1 cut(s) 1079
BanII GRGCYC 2 cut(s) 485, 1003
BbsI GAAGAC 2 cut(s) 753, 788
Bbv12I GWGCWC 2 cut(s) 485, 845
BbvI GCAGC 4 cut(s) 319, 574, 659, 1058
BccI CCATC 1 cut(s) 1160
BciT130I CCWGG 1 cut(s) 442
BciVI GTATCC 1 cut(s) 819
BcnI CCSGG 1 cut(s) 853
BcoDI GTCTC 3 cut(s) 133, 326, 675
BfaI CTAG 4 cut(s) 375, 389, 504, 1098
BfuI GTATCC 1 cut(s) 819
BglI GCCNNNNNGGC 1 cut(s) 644
BisI GCNGC 5 cut(s) 333, 343, 588, 648, 1047
BlpI GCTNAGC 1 cut(s) 1038
BlsI GCNGC 5 cut(s) 334, 344, 589, 649, 1048
Bme1390I CCNGG 2 cut(s) 442, 853
Bme18I GGWCC 1 cut(s) 371
BmeT110I CYCGRG 2 cut(s) 79, 613
BmgT120I GGNCC 1 cut(s) 371
BmiI GGNNCC 2 cut(s) 248, 1081
BmrFI CCNGG 2 cut(s) 442, 853
BmsI GCATC 1 cut(s) 302
BpiI GAAGAC 2 cut(s) 753, 788
Bpu10I CCTNAGC 1 cut(s) 1032
Bpu1102I GCTNAGC 1 cut(s) 1038
BpuEI CTTGAG 2 cut(s) 308, 601
BpuMI CCSGG 1 cut(s) 853
BsaJI CCNNGG 2 cut(s) 80, 852
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 858
Bse118I RCCGGY 1 cut(s) 1082
Bse21I CCTNAGG 1 cut(s) 1014
Bse3DI GCAATG 2 cut(s) 633, 975
BseBI CCWGG 1 cut(s) 442
BseDI CCNNGG 2 cut(s) 80, 852
BseGI GGATG 3 cut(s) 163, 523, 1171
BseLI CCNNNNNNNGG 2 cut(s) 176, 858
BseMI GCAATG 2 cut(s) 633, 975
BseMII CTCAG 2 cut(s) 732, 1028
BseSI GKGCMC 1 cut(s) 1173
BseXI GCAGC 4 cut(s) 319, 574, 659, 1058
BshFI GGCC 2 cut(s) 228, 342
BshNI GGYRCC 1 cut(s) 1079
BsiHKAI GWGCWC 2 cut(s) 485, 845
BsiHKCI CYCGRG 2 cut(s) 79, 613
BsiSI CCGG 2 cut(s) 852, 1083
BslFI GGGAC 1 cut(s) 573
BslI CCNNNNNNNGG 2 cut(s) 176, 858
BsmAI GTCTC 3 cut(s) 133, 326, 675
BsmBI CGTCTC 1 cut(s) 133
BsmFI GGGAC 1 cut(s) 573
BsmI GAATGC 1 cut(s) 883
BsnI GGCC 2 cut(s) 228, 342
BsoBI CYCGRG 2 cut(s) 79, 613
Bsp1286I GDGCHC 4 cut(s) 485, 845, 1003, 1173
Bsp143I GATC 3 cut(s) 205, 498, 1144
Bsp1720I GCTNAGC 1 cut(s) 1038
BspACI CCGC 3 cut(s) 343, 590, 1077
BspANI GGCC 2 cut(s) 228, 342
BspCNI CTCAG 2 cut(s) 733, 1027
BspHI TCATGA 1 cut(s) 762
BspLI GGNNCC 2 cut(s) 248, 1081
BspPI GGATC 1 cut(s) 1152
BspT107I GGYRCC 1 cut(s) 1079
BsrDI GCAATG 2 cut(s) 633, 975
BsrFI RCCGGY 1 cut(s) 1082
BssAI RCCGGY 1 cut(s) 1082
BssECI CCNNGG 2 cut(s) 80, 852
BssMI GATC 3 cut(s) 205, 498, 1144
BssNAI GTATAC 3 cut(s) 1010, 1090, 1180
Bst1107I GTATAC 3 cut(s) 1010, 1090, 1180
Bst2UI CCWGG 1 cut(s) 442
Bst4CI ACNGT 4 cut(s) 31, 662, 787, 1184
BstC8I GCNNGC 3 cut(s) 219, 723, 1044
BstDEI CTNAG 6 cut(s) 398, 741, 1014, 1032, 1038, 1120
BstF5I GGATG 3 cut(s) 163, 523, 1171
BstKTI GATC 3 cut(s) 208, 501, 1147
BstMAI GTCTC 3 cut(s) 133, 326, 675
BstMBI GATC 3 cut(s) 205, 498, 1144
BstMWI GCNNNNNNNGC 3 cut(s) 348, 644, 1043
BstNI CCWGG 1 cut(s) 442
BstNSI RCATGY 1 cut(s) 349
BstSCI CCNGG 2 cut(s) 440, 851
BstSLI GKGCMC 1 cut(s) 1173
BstV1I GCAGC 4 cut(s) 319, 574, 659, 1058
BstV2I GAAGAC 2 cut(s) 753, 788
BstX2I RGATCY 1 cut(s) 1144
BstYI RGATCY 1 cut(s) 1144
BstZ17I GTATAC 3 cut(s) 1010, 1090, 1180
Bsu36I CCTNAGG 1 cut(s) 1014
BsuI GTATCC 1 cut(s) 819
BsuRI GGCC 2 cut(s) 228, 342
BtsCI GGATG 3 cut(s) 163, 523, 1171
BtsIMutI CAGTG 1 cut(s) 792
Cac8I GCNNGC 3 cut(s) 219, 723, 1044
CciI TCATGA 1 cut(s) 762
Cfr10I RCCGGY 1 cut(s) 1082
Cfr13I GGNCC 1 cut(s) 371
Csp6I GTAC 3 cut(s) 35, 537, 628
CviAII CATG 8 cut(s) 188, 346, 352, 409, 763, 838, 981, 1150
CviQI GTAC 3 cut(s) 35, 537, 628
DdeI CTNAG 6 cut(s) 398, 741, 1014, 1032, 1038, 1120
DpnI GATC 3 cut(s) 207, 500, 1146
DpnII GATC 3 cut(s) 205, 498, 1144
DraIII CACNNNGTG 1 cut(s) 412
EaeI YGGCCR 2 cut(s) 226, 340
Ecl136II GAGCTC 1 cut(s) 483
Eco24I GRGCYC 2 cut(s) 485, 1003
Eco47I GGWCC 1 cut(s) 371
Eco53kI GAGCTC 1 cut(s) 483
Eco57I CTGAAG 1 cut(s) 792
Eco81I CCTNAGG 1 cut(s) 1014
Eco88I CYCGRG 2 cut(s) 79, 613
EcoICRI GAGCTC 1 cut(s) 483
EcoRI GAATTC 1 cut(s) 914
EcoRII CCWGG 1 cut(s) 440
EcoT38I GRGCYC 2 cut(s) 485, 1003
Esp3I CGTCTC 1 cut(s) 133
FaeI CATG 8 cut(s) 191, 349, 355, 412, 766, 841, 984, 1153
FalI AAGNNNNNCTT 2 cut(s) 536, 568
FaqI GGGAC 1 cut(s) 573
FatI CATG 8 cut(s) 187, 345, 351, 408, 762, 837, 980, 1149
FblI GTMKAC 3 cut(s) 1009, 1089, 1179
Fnu4HI GCNGC 5 cut(s) 333, 343, 588, 648, 1047
FokI GGATG 3 cut(s) 170, 530, 1178
FriOI GRGCYC 2 cut(s) 485, 1003
Fsp4HI GCNGC 5 cut(s) 333, 343, 588, 648, 1047
FspBI CTAG 4 cut(s) 375, 389, 504, 1098
GluI GCNGC 5 cut(s) 333, 343, 588, 648, 1047
HaeIII GGCC 2 cut(s) 228, 342
HapII CCGG 2 cut(s) 852, 1083
Hin1II CATG 8 cut(s) 191, 349, 355, 412, 766, 841, 984, 1153
HindIII AAGCTT 1 cut(s) 215
HinfI GANTC 2 cut(s) 299, 901
HpaII CCGG 2 cut(s) 852, 1083
HphI GGTGA 4 cut(s) 16, 158, 424, 815
Hpy166II GTNNAC 3 cut(s) 1010, 1090, 1180
Hpy188I TCNGA 4 cut(s) 468, 742, 849, 906
Hpy188III TCNNGA 6 cut(s) 19, 194, 763, 832, 919, 1163
Hpy8I GTNNAC 3 cut(s) 1010, 1090, 1180
HpyAV CCTTC 3 cut(s) 40, 194, 432
HpyCH4III ACNGT 4 cut(s) 31, 662, 787, 1184
HpyCH4IV ACGT 2 cut(s) 471, 1176
HpyCH4V TGCA 9 cut(s) 118, 221, 242, 315, 351, 705, 721, 881, 968
HpyF10VI GCNNNNNNNGC 3 cut(s) 348, 644, 1043
HpyF3I CTNAG 6 cut(s) 398, 741, 1014, 1032, 1038, 1120
HpySE526I ACGT 2 cut(s) 471, 1176
Hsp92II CATG 8 cut(s) 191, 349, 355, 412, 766, 841, 984, 1153
Kzo9I GATC 3 cut(s) 205, 498, 1144
Lsp1109I GCAGC 4 cut(s) 319, 574, 659, 1058
LweI GCATC 1 cut(s) 302
MaeI CTAG 4 cut(s) 375, 389, 504, 1098
MaeII ACGT 2 cut(s) 471, 1176
MaeIII GTNAC 2 cut(s) 546, 983
MalI GATC 3 cut(s) 207, 500, 1146
MboI GATC 3 cut(s) 205, 498, 1144
MboII GAAGA 5 cut(s) 34, 758, 793, 1117, 1120
MfeI CAATTG 1 cut(s) 426
MflI RGATCY 1 cut(s) 1144
MhlI GDGCHC 4 cut(s) 485, 845, 1003, 1173
MlsI TGGCCA 1 cut(s) 228
MluCI AATT 6 cut(s) 119, 281, 426, 914, 1111, 1158
MluNI TGGCCA 1 cut(s) 228
Mox20I TGGCCA 1 cut(s) 228
MroXI GAANNNNTTC 2 cut(s) 50, 262
MscI TGGCCA 1 cut(s) 228
MseI TTAA 4 cut(s) 287, 492, 666, 950
MslI CAYNNNNRTG 1 cut(s) 350
Msp20I TGGCCA 1 cut(s) 228
MspI CCGG 2 cut(s) 852, 1083
MspR9I CCNGG 2 cut(s) 442, 853
MunI CAATTG 1 cut(s) 426
Mva1269I GAATGC 1 cut(s) 883
MvaI CCWGG 1 cut(s) 442
MwoI GCNNNNNNNGC 3 cut(s) 348, 644, 1043
NciI CCSGG 1 cut(s) 853
NdeII GATC 3 cut(s) 205, 498, 1144
NlaIII CATG 8 cut(s) 191, 349, 355, 412, 766, 841, 984, 1153
NlaIV GGNNCC 2 cut(s) 248, 1081
NmuCI GTSAC 2 cut(s) 546, 983
NspI RCATGY 1 cut(s) 349
PagI TCATGA 1 cut(s) 762
PctI GAATGC 1 cut(s) 883
PdmI GAANNNNTTC 2 cut(s) 50, 262
PfeI GAWTC 2 cut(s) 299, 901
PkrI GCNGC 5 cut(s) 334, 344, 589, 649, 1048
PsiI TTATAA 2 cut(s) 359, 573
Psp124BI GAGCTC 1 cut(s) 485
Psp1406I AACGTT 1 cut(s) 471
Psp6I CCWGG 1 cut(s) 440
PspGI CCWGG 1 cut(s) 440
PspN4I GGNNCC 2 cut(s) 248, 1081
PspPI GGNCC 1 cut(s) 371
PsuI RGATCY 1 cut(s) 1144
RsaI GTAC 3 cut(s) 36, 538, 629
RsaNI GTAC 3 cut(s) 35, 537, 628
RseI CAYNNNNRTG 1 cut(s) 350
SacI GAGCTC 1 cut(s) 485
SaqAI TTAA 4 cut(s) 287, 492, 666, 950
SatI GCNGC 5 cut(s) 333, 343, 588, 648, 1047
Sau3AI GATC 3 cut(s) 205, 498, 1144
Sau96I GGNCC 1 cut(s) 371
ScrFI CCNGG 2 cut(s) 442, 853
SduI GDGCHC 4 cut(s) 485, 845, 1003, 1173
SfaNI GCATC 1 cut(s) 302
SinI GGWCC 1 cut(s) 371
SmiMI CAYNNNNRTG 1 cut(s) 350
SmlI CTYRAG 2 cut(s) 323, 580
SmoI CTYRAG 2 cut(s) 323, 580
Sse9I AATT 6 cut(s) 119, 281, 426, 914, 1111, 1158
SsiI CCGC 3 cut(s) 343, 590, 1077
SspI AATATT 1 cut(s) 450
SspMI CTAG 4 cut(s) 375, 389, 504, 1098
SstI GAGCTC 1 cut(s) 485
StyD4I CCNGG 2 cut(s) 440, 851
TaaI ACNGT 4 cut(s) 31, 662, 787, 1184
TaiI ACGT 2 cut(s) 474, 1179
TaqI TCGA 1 cut(s) 195
TasI AATT 6 cut(s) 119, 281, 426, 914, 1111, 1158
TauI GCSGC 1 cut(s) 345
TfiI GAWTC 2 cut(s) 299, 901
Tru1I TTAA 4 cut(s) 287, 492, 666, 950
Tru9I TTAA 4 cut(s) 287, 492, 666, 950
TscAI CASTG 1 cut(s) 792
TseFI GTSAC 2 cut(s) 546, 983
TseI GCWGC 4 cut(s) 332, 587, 647, 1046
Tsp45I GTSAC 2 cut(s) 546, 983
TspDTI ATGAA 8 cut(s) 43, 176, 478, 695, 779, 794, 938, 1146
TspGWI ACGGA 1 cut(s) 121
TspRI CASTG 1 cut(s) 792
VpaK11BI GGWCC 1 cut(s) 371
XapI RAATTY 2 cut(s) 914, 1158
XceI RCATGY 1 cut(s) 349
XmiI GTMKAC 3 cut(s) 1009, 1089, 1179
XmnI GAANNNNTTC 2 cut(s) 50, 262
XspI CTAG 4 cut(s) 375, 389, 504, 1098
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.