Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

5002529 .. 5003028

Gene Structure 500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G046600.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGAACATTGCTTACTTCATCCAAGCTCCCTTGTATACTTTCTTAAGAAGTATGTGGAAGATAGTATCCAGGCTCCCTTCTTCACGGGCCAAGAAGTTTTGGTGCACCTTAATGCATGTTCCTTATATTACCATCAACCCCAACCTACCCGCCGGAGCAAGGGATAGATTCAAATCTGTTGAGGCTTCAGGAATTGAAGGGTACTCCATTTTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00905 map00905

Pfam Domains

Protein Families

p450

Protein Analysis

73

Amino Acids

8.36

Weight (kDa)

9.92

Isoelectric Point (pI)

63.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	35
AciI	CCGC	1 cut(s)	150
AcuI	CTGAAG	1 cut(s)	171
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	159
AflII	CTTAAG	1 cut(s)	43
AgsI	TTSAA	2 cut(s)	172, 197
AjnI	CCWGG	1 cut(s)	68
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
Alw21I	GWGCWC	1 cut(s)	107
Alw44I	GTGCAC	1 cut(s)	103
AoxI	GGCC	1 cut(s)	87
ApaLI	GTGCAC	1 cut(s)	103
AspS9I	GGNCC	1 cut(s)	87
BaeGI	GKGCMC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	107
BccI	CCATC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	70
BciVI	GTATCC	1 cut(s)	76
BfrI	CTTAAG	1 cut(s)	43
BfuI	GTATCC	1 cut(s)	76
Bme1390I	CCNGG	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	87
BmiI	GGNNCC	1 cut(s)	74
BmrFI	CCNGG	1 cut(s)	70
BsaBI	GATNNNNATC	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
Bse3DI	GCAATG	1 cut(s)	6
Bse8I	GATNNNNATC	1 cut(s)	172
BseBI	CCWGG	1 cut(s)	70
BseGI	GGATG	1 cut(s)	18
BseJI	GATNNNNATC	1 cut(s)	172
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseMI	GCAATG	1 cut(s)	6
BseSI	GKGCMC	1 cut(s)	107
BshFI	GGCC	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	153
BslI	CCNNNNNNNGG	1 cut(s)	159
BsnI	GGCC	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	107
BspACI	CCGC	1 cut(s)	150
BspANI	GGCC	1 cut(s)	89
BspLI	GGNNCC	1 cut(s)	74
BspTI	CTTAAG	1 cut(s)	43
BsrDI	GCAATG	1 cut(s)	6
BssNAI	GTATAC	1 cut(s)	36
Bst1107I	GTATAC	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	70
BstAFI	CTTAAG	1 cut(s)	43
BstF5I	GGATG	1 cut(s)	18
BstNI	CCWGG	1 cut(s)	70
BstNSI	RCATGY	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	68
BstSLI	GKGCMC	1 cut(s)	107
BstZ17I	GTATAC	1 cut(s)	36
BsuI	GTATCC	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	18
Cfr13I	GGNCC	1 cut(s)	87
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	1 cut(s)	116
CviJI	RGCY	4 cut(s)	26, 73, 89, 185
CviKI_1	RGCY	4 cut(s)	26, 73, 89, 185
CviQI	GTAC	1 cut(s)	202
Eco57I	CTGAAG	1 cut(s)	171
EcoRII	CCWGG	1 cut(s)	68
EcoT22I	ATGCAT	1 cut(s)	117
FaeI	CATG	1 cut(s)	119
FaiI	YATR	4 cut(s)	36, 53, 117, 126
FatI	CATG	1 cut(s)	115
FauI	CCCGC	1 cut(s)	157
FblI	GTMKAC	1 cut(s)	35
FokI	GGATG	1 cut(s)	5
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	1 cut(s)	153
Hin1II	CATG	1 cut(s)	119
HinfI	GANTC	1 cut(s)	168
HpaII	CCGG	1 cut(s)	153
Hpy166II	GTNNAC	2 cut(s)	36, 105
Hpy188III	TCNNGA	1 cut(s)	189
Hpy8I	GTNNAC	2 cut(s)	36, 105
HpyAV	CCTTC	2 cut(s)	87, 191
HpyCH4V	TGCA	2 cut(s)	105, 115
Hsp92II	CATG	1 cut(s)	119
LmnI	GCTCC	3 cut(s)	31, 78, 155
LpnPI	CCDG	4 cut(s)	55, 82, 166, 174
MboII	GAAGA	2 cut(s)	70, 72
MhlI	GDGCHC	1 cut(s)	107
MluCI	AATT	1 cut(s)	192
MnlI	CCTC	1 cut(s)	175
Mph1103I	ATGCAT	1 cut(s)	117
MseI	TTAA	2 cut(s)	44, 110
MslI	CAYNNNNRTG	1 cut(s)	110
MspCI	CTTAAG	1 cut(s)	43
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	70
NlaIII	CATG	1 cut(s)	119
NlaIV	GGNNCC	1 cut(s)	74
NsiI	ATGCAT	1 cut(s)	117
NspI	RCATGY	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	1 cut(s)	74
PspPI	GGNCC	1 cut(s)	87
PsrI	GAACNNNNNNTAC	1 cut(s)	28
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	110
SaqAI	TTAA	2 cut(s)	44, 110
Sau96I	GGNCC	1 cut(s)	87
ScrFI	CCNGG	1 cut(s)	70
SduI	GDGCHC	1 cut(s)	107
SetI	ASST	3 cut(s)	28, 110, 147
SmiMI	CAYNNNNRTG	1 cut(s)	110
SmlI	CTYRAG	1 cut(s)	43
SmoI	CTYRAG	1 cut(s)	43
Sse9I	AATT	1 cut(s)	192
SsiI	CCGC	1 cut(s)	150
StyD4I	CCNGG	1 cut(s)	68
TasI	AATT	1 cut(s)	192
TfiI	GAWTC	1 cut(s)	168
Tru1I	TTAA	2 cut(s)	44, 110
Tru9I	TTAA	2 cut(s)	44, 110
TspDTI	ATGAA	2 cut(s)	7, 17
Vha464I	CTTAAG	1 cut(s)	43
VneI	GTGCAC	1 cut(s)	103
XceI	RCATGY	1 cut(s)	119
XmiI	GTMKAC	1 cut(s)	35
Zsp2I	ATGCAT	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.