Prupe.5G049100_v2.0.a1

Rae1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
N/A
Physical Location & Seq
Reverse (-)
5190935 .. 5197066
6132 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G049100.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 1062 bp
ATGTCGAAGTTCATGGCTGCTCCAAATGCAAATGCAAATTCAACTTCAAATCCAAATCCAAACAACTCCTTCGAGGTCGCTCAACCTCCAAACGACTCCATATCAAGCCTAAGTTTCAGTCCCAAGAGCAACATTCTGGTCGCCACCTCCTGGGACAACCAGGTGCGATGCTGGGAGATACAACAGAGCGGAACAAATCTTGTCAGTCAGCCCCAGGCAGCGATATCCCATGACCATCCGGTTTTGTGCTCAACTTGGAAAGAGGATGGAACAACTGTGTTCTCTGGAGGTTGCGACAAGCAAGTGAAGATGTGGCCTTTGGGTGGCCAGCCAGTAACGGTTGCCGTGCATGATGCACCCATTAAAGAGATTGCTTGGATCCCTGAGATGAGCCTCTTAGTCACAGGAAGCTTGGACAAGACTATGAAGTATTGGGACGTGAGGCAGCCAAATCCGGTGCATACACAACAGCTACCTGAGCGCTGTTATGCTCTATCAGTGAGATACCCTCTAATGGTTGTTGGCACTGCAGACAGAAATCTGATTGTTTTTAACTTGCAGAACCCTCAGACTGAATTCAAGAGAATTCTTTCGCCCCTAAAGTATCAAACAAGGTGTGTGGCTGCATTTCCTGATCAGCAAGGATTCTTGGTTGGCTCTATTGAAGGGAGGGTTGGCGTACATCATCTGGATGAAAAACAAAATGATAAAAACTTTACCTTTAAGTGCCATAGAGAGGGCACCAGGATATACTCAGTCAACTCTCTGAACTTCCATCCAGTGCATCACACACTTACTACTGCTGGTTCTGATGGTTCTTTCACTTTTTGGGATAAGGATAGCAAACAGAGACTAAAGGAAATGTCAAGGTGCAATCAACCTATACCTTGCAGTACGTTCAACAATGATGGTTCCATATTTGCATATGCGGTTTGCTATGATTGGGGCAAGGGTGCAGAAAAACATAATCCAGATACCGCAAAGAACTACATTTTCCTCCATGTGCCACAGGAAGCCGAGGTTAAAAGGAAACCACGAGTCAACACTGGTGGAAATAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05164 map03013 map05164
Pfam Domains
Protein Families
WD40

Protein Analysis

354

Amino Acids

39.55

Weight (kDa)

8.5

Isoelectric Point (pI)

39.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 740
AccB7I CCANNNNNTGG 1 cut(s) 150
AccBSI CCGCTC 1 cut(s) 189
AciI CCGC 3 cut(s) 189, 929, 978
AclWI GGATC 2 cut(s) 373, 386
AcoI YGGCCR 1 cut(s) 325
AcsI RAATTY 3 cut(s) 37, 575, 585
AfaI GTAC 2 cut(s) 681, 895
AfeI AGCGCT 1 cut(s) 482
AfiI CCNNNNNNNGG 4 cut(s) 150, 323, 514, 736
AgsI TTSAA 5 cut(s) 42, 48, 580, 665, 901
AjiI CACGTC 1 cut(s) 439
AjnI CCWGG 4 cut(s) 149, 159, 213, 743
AjuI GAANNNNNNNTTGG 2 cut(s) 657, 689
AluBI AGCT 2 cut(s) 411, 472
AluI AGCT 2 cut(s) 411, 472
Alw21I GWGCWC 1 cut(s) 251
Alw26I GTCTC 1 cut(s) 844
AlwI GGATC 2 cut(s) 373, 386
Aor51HI AGCGCT 1 cut(s) 482
AoxI GGCC 2 cut(s) 314, 325
ApeKI GCWGC 4 cut(s) 17, 218, 445, 623
ApoI RAATTY 3 cut(s) 37, 575, 585
Asp700I GAANNNNTTC 1 cut(s) 589
AspLEI GCGC 1 cut(s) 483
BaeGI GKGCMC 1 cut(s) 743
BalI TGGCCA 1 cut(s) 327
BamHI GGATCC 1 cut(s) 378
BanI GGYRCC 1 cut(s) 740
BauI CACGAG 1 cut(s) 1035
Bbv12I GWGCWC 1 cut(s) 251
BbvI GCAGC 4 cut(s) 4, 230, 457, 610
BccI CCATC 5 cut(s) 243, 260, 783, 806, 902
BceAI ACGGC 1 cut(s) 329
BciT130I CCWGG 4 cut(s) 151, 161, 215, 745
BclI TGATCA 1 cut(s) 634
BcoDI GTCTC 1 cut(s) 844
BfmI CTRYAG 1 cut(s) 528
BfoI RGCGCY 1 cut(s) 484
BisI GCNGC 4 cut(s) 18, 219, 446, 624
BlsI GCNGC 4 cut(s) 19, 220, 447, 625
Bme1390I CCNGG 4 cut(s) 151, 161, 215, 745
BmgBI CACGTC 1 cut(s) 439
BmiI GGNNCC 3 cut(s) 380, 742, 913
BmrFI CCNGG 4 cut(s) 151, 161, 215, 745
BmsI GCATC 3 cut(s) 158, 343, 793
BplI GAGNNNNNCTC 2 cut(s) 493, 525
BpmI CTGGAG 1 cut(s) 306
Bpu10I CCTNAGC 1 cut(s) 477
BsaJI CCNNGG 3 cut(s) 150, 213, 1017
BsaWI WCCGGW 2 cut(s) 238, 454
Bsc4I CCNNNNNNNGG 4 cut(s) 150, 323, 514, 736
Bse1I ACTGG 3 cut(s) 332, 779, 1051
BseBI CCWGG 4 cut(s) 151, 161, 215, 745
BseDI CCNNGG 3 cut(s) 150, 213, 1017
BseGI GGATG 4 cut(s) 235, 271, 697, 775
BseLI CCNNNNNNNGG 4 cut(s) 150, 323, 514, 736
BseMII CTCAG 4 cut(s) 375, 468, 581, 768
BseNI ACTGG 3 cut(s) 332, 779, 1051
BseSI GKGCMC 1 cut(s) 743
BseXI GCAGC 4 cut(s) 4, 230, 457, 610
BseYI CCCAGC 1 cut(s) 171
BsgI GTGCAG 1 cut(s) 975
BshFI GGCC 2 cut(s) 316, 327
BshNI GGYRCC 1 cut(s) 740
BsiHKAI GWGCWC 1 cut(s) 251
BsiSI CCGG 2 cut(s) 239, 455
BslFI GGGAC 3 cut(s) 105, 167, 449
BslI CCNNNNNNNGG 4 cut(s) 150, 323, 514, 736
BsmAI GTCTC 1 cut(s) 844
BsmFI GGGAC 3 cut(s) 105, 167, 449
BsnI GGCC 2 cut(s) 316, 327
Bsp1286I GDGCHC 2 cut(s) 251, 743
Bsp143I GATC 2 cut(s) 378, 634
BspACI CCGC 3 cut(s) 189, 929, 978
BspANI GGCC 2 cut(s) 316, 327
BspCNI CTCAG 4 cut(s) 376, 469, 580, 767
BspLI GGNNCC 3 cut(s) 380, 742, 913
BspMAI CTGCAG 1 cut(s) 532
BspPI GGATC 2 cut(s) 373, 386
BspT107I GGYRCC 1 cut(s) 740
BsrBI CCGCTC 1 cut(s) 189
BsrI ACTGG 3 cut(s) 332, 779, 1051
BssECI CCNNGG 3 cut(s) 150, 213, 1017
BssMI GATC 2 cut(s) 378, 634
BssSI CACGAG 1 cut(s) 1035
Bst2BI CACGAG 1 cut(s) 1035
Bst2UI CCWGG 4 cut(s) 151, 161, 215, 745
Bst4CI ACNGT 2 cut(s) 277, 340
BstC8I GCNNGC 1 cut(s) 329
BstDEI CTNAG 6 cut(s) 110, 384, 397, 477, 567, 754
BstF5I GGATG 4 cut(s) 235, 271, 697, 775
BstH2I RGCGCY 1 cut(s) 484
BstHHI GCGC 1 cut(s) 483
BstKTI GATC 2 cut(s) 381, 637
BstMAI GTCTC 1 cut(s) 844
BstMBI GATC 2 cut(s) 378, 634
BstMWI GCNNNNNNNGC 2 cut(s) 26, 478
BstNI CCWGG 4 cut(s) 151, 161, 215, 745
BstSCI CCNGG 4 cut(s) 149, 159, 213, 743
BstSFI CTRYAG 1 cut(s) 528
BstSLI GKGCMC 1 cut(s) 743
BstV1I GCAGC 4 cut(s) 4, 230, 457, 610
BstX2I RGATCY 1 cut(s) 378
BstYI RGATCY 1 cut(s) 378
BsuRI GGCC 2 cut(s) 316, 327
BtgZI GCGATG 1 cut(s) 181
BtrI CACGTC 1 cut(s) 439
BtsCI GGATG 4 cut(s) 235, 271, 697, 775
BtsI GCAGTG 1 cut(s) 525
BtsIMutI CAGTG 4 cut(s) 504, 525, 786, 1044
Cac8I GCNNGC 1 cut(s) 329
CfoI GCGC 1 cut(s) 483
CsiI ACCWGGT 1 cut(s) 159
Csp6I GTAC 2 cut(s) 680, 894
CspCI CAANNNNNGTGG 3 cut(s) 600, 635, 1030
CviAII CATG 4 cut(s) 13, 230, 350, 1001
CviQI GTAC 2 cut(s) 680, 894
DdeI CTNAG 6 cut(s) 110, 384, 397, 477, 567, 754
DpnI GATC 2 cut(s) 380, 636
DpnII GATC 2 cut(s) 378, 634
EaeI YGGCCR 1 cut(s) 325
Eco32I GATATC 1 cut(s) 225
Eco47III AGCGCT 1 cut(s) 482
EcoRI GAATTC 2 cut(s) 575, 585
EcoRII CCWGG 4 cut(s) 149, 159, 213, 743
EcoRV GATATC 1 cut(s) 225
FaeI CATG 4 cut(s) 16, 233, 353, 1004
FaqI GGGAC 3 cut(s) 105, 167, 449
FatI CATG 4 cut(s) 12, 229, 349, 1000
FauNDI CATATG 1 cut(s) 925
FbaI TGATCA 1 cut(s) 634
Fnu4HI GCNGC 4 cut(s) 18, 219, 446, 624
FokI GGATG 4 cut(s) 222, 278, 704, 762
Fsp4HI GCNGC 4 cut(s) 18, 219, 446, 624
GlaI GCGC 1 cut(s) 482
GluI GCNGC 4 cut(s) 18, 219, 446, 624
GsaI CCCAGC 1 cut(s) 175
GsuI CTGGAG 1 cut(s) 306
HaeII RGCGCY 1 cut(s) 484
HaeIII GGCC 2 cut(s) 316, 327
HapII CCGG 2 cut(s) 239, 455
HhaI GCGC 1 cut(s) 483
Hin1II CATG 4 cut(s) 16, 233, 353, 1004
Hin6I GCGC 1 cut(s) 481
HinP1I GCGC 1 cut(s) 481
HincII GTYRAC 2 cut(s) 760, 1042
HindII GTYRAC 2 cut(s) 760, 1042
HindIII AAGCTT 1 cut(s) 409
HinfI GANTC 3 cut(s) 95, 645, 1038
HpaII CCGG 2 cut(s) 239, 455
Hpy166II GTNNAC 2 cut(s) 760, 1042
Hpy188I TCNGA 4 cut(s) 543, 570, 768, 811
Hpy188III TCNNGA 5 cut(s) 285, 580, 632, 689, 971
Hpy8I GTNNAC 2 cut(s) 760, 1042
HpyAV CCTTC 2 cut(s) 79, 659
HpyCH4III ACNGT 2 cut(s) 277, 340
HpyCH4IV ACGT 2 cut(s) 438, 896
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 478
HpyF3I CTNAG 6 cut(s) 110, 384, 397, 477, 567, 754
HpySE526I ACGT 2 cut(s) 438, 896
Hsp92II CATG 4 cut(s) 16, 233, 353, 1004
HspAI GCGC 1 cut(s) 481
Ksp22I TGATCA 1 cut(s) 634
Kzo9I GATC 2 cut(s) 378, 634
LmnI GCTCC 1 cut(s) 25
Lsp1109I GCAGC 4 cut(s) 4, 230, 457, 610
LweI GCATC 3 cut(s) 158, 343, 793
MabI ACCWGGT 1 cut(s) 159
MaeII ACGT 2 cut(s) 438, 896
MaeIII GTNAC 2 cut(s) 334, 400
MalI GATC 2 cut(s) 380, 636
MbiI CCGCTC 1 cut(s) 189
MboI GATC 2 cut(s) 378, 634
MboII GAAGA 1 cut(s) 319
MflI RGATCY 1 cut(s) 378
MhlI GDGCHC 2 cut(s) 251, 743
MlsI TGGCCA 1 cut(s) 327
MluCI AATT 3 cut(s) 37, 575, 585
MluNI TGGCCA 1 cut(s) 327
MlyI GAGTC 2 cut(s) 89, 1047
Mox20I TGGCCA 1 cut(s) 327
MroXI GAANNNNTTC 1 cut(s) 589
MscI TGGCCA 1 cut(s) 327
MseI TTAA 4 cut(s) 363, 552, 723, 1023
MslI CAYNNNNRTG 1 cut(s) 690
Msp20I TGGCCA 1 cut(s) 327
MspI CCGG 2 cut(s) 239, 455
MspR9I CCNGG 4 cut(s) 151, 161, 215, 745
MvaI CCWGG 4 cut(s) 151, 161, 215, 745
MwoI GCNNNNNNNGC 2 cut(s) 26, 478
NdeI CATATG 1 cut(s) 925
NdeII GATC 2 cut(s) 378, 634
NlaIII CATG 4 cut(s) 16, 233, 353, 1004
NlaIV GGNNCC 3 cut(s) 380, 742, 913
NmeAIII GCCGAG 1 cut(s) 1042
NmuCI GTSAC 1 cut(s) 400
PdmI GAANNNNTTC 1 cut(s) 589
PfeI GAWTC 1 cut(s) 645
PflMI CCANNNNNTGG 1 cut(s) 150
PkrI GCNGC 4 cut(s) 19, 220, 447, 625
PleI GAGTC 2 cut(s) 89, 1046
PpsI GAGTC 2 cut(s) 89, 1046
Psp6I CCWGG 4 cut(s) 149, 159, 213, 743
PspFI CCCAGC 1 cut(s) 171
PspGI CCWGG 4 cut(s) 149, 159, 213, 743
PspN4I GGNNCC 3 cut(s) 380, 742, 913
PstI CTGCAG 1 cut(s) 532
PsuI RGATCY 1 cut(s) 378
RsaI GTAC 2 cut(s) 681, 895
RsaNI GTAC 2 cut(s) 680, 894
RseI CAYNNNNRTG 1 cut(s) 690
SaqAI TTAA 4 cut(s) 363, 552, 723, 1023
SatI GCNGC 4 cut(s) 18, 219, 446, 624
Sau3AI GATC 2 cut(s) 378, 634
SchI GAGTC 2 cut(s) 89, 1047
ScrFI CCNGG 4 cut(s) 151, 161, 215, 745
SduI GDGCHC 2 cut(s) 251, 743
SexAI ACCWGGT 1 cut(s) 159
SfaNI GCATC 3 cut(s) 158, 343, 793
SfcI CTRYAG 1 cut(s) 528
SmiMI CAYNNNNRTG 1 cut(s) 690
Sse9I AATT 3 cut(s) 37, 575, 585
SsiI CCGC 3 cut(s) 189, 929, 978
StyD4I CCNGG 4 cut(s) 149, 159, 213, 743
TaaI ACNGT 2 cut(s) 277, 340
TaiI ACGT 2 cut(s) 441, 899
TaqI TCGA 2 cut(s) 5, 72
TasI AATT 3 cut(s) 37, 575, 585
TfiI GAWTC 1 cut(s) 645
Tru1I TTAA 4 cut(s) 363, 552, 723, 1023
Tru9I TTAA 4 cut(s) 363, 552, 723, 1023
TscAI CASTG 4 cut(s) 504, 532, 786, 1051
TseFI GTSAC 1 cut(s) 400
TseI GCWGC 4 cut(s) 17, 218, 445, 623
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 2 cut(s) 440, 708
TspRI CASTG 4 cut(s) 504, 532, 786, 1051
Van91I CCANNNNNTGG 1 cut(s) 150
XapI RAATTY 3 cut(s) 37, 575, 585
XmnI GAANNNNTTC 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.