Prupe.5G050600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
N/A
Physical Location & Seq
Reverse (-)
5389330 .. 5389665
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G050600.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 336 bp
ATGCTCCGCCAGCGCCTCATCCAGACTGTCCGAACTCGCGACGGTTCAGCCACAGGTCCGAGCCGATGGACCTGCCCGGGCCACGAGGAGCAACCCAAAGGTTACCTCTTCAACCGGACCCCGTTGTCCCCAGGCCAGACTCGAAAATGGGAGGACTGGGAGCTCCCTTGTTACGTCACCAGCTTCCTCACCATCGTTATCCTTGGCGTCGGCCTCAACTCTAAGCCTGATCTCAGCATCGAGACCAAGCACTTCAGGTGCATAAGAGGCCAAGTACCATTCTCTGCTTTCAACTGGGGCTGTTGGAATGTATGCAGGACAGTTGGCCAGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.68

Weight (kDa)

9.44

Isoelectric Point (pI)

37.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 124
Acc36I ACCTGC 1 cut(s) 80
AccII CGCG 1 cut(s) 39
AciI CCGC 1 cut(s) 7
AcoI YGGCCR 1 cut(s) 325
AcuI CTGAAG 1 cut(s) 238
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 1 cut(s) 276
AgsI TTSAA 2 cut(s) 112, 292
AjnI CCWGG 2 cut(s) 130, 327
AluBI AGCT 2 cut(s) 163, 183
AluI AGCT 2 cut(s) 163, 183
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 1 cut(s) 236
Ama87I CYCGRG 1 cut(s) 76
AoxI GGCC 5 cut(s) 79, 133, 211, 268, 325
AspLEI GCGC 1 cut(s) 15
AspS9I GGNCC 4 cut(s) 56, 69, 79, 117
AsuC2I CCSGG 2 cut(s) 77, 78
AsuHPI GGTGA 2 cut(s) 169, 181
AvaI CYCGRG 1 cut(s) 76
AvaII GGWCC 3 cut(s) 56, 69, 117
BalI TGGCCA 1 cut(s) 327
BanII GRGCYC 1 cut(s) 165
BauI CACGAG 1 cut(s) 83
Bbv12I GWGCWC 1 cut(s) 165
BccI CCATC 2 cut(s) 60, 200
BcgI CGANNNNNNTGC 2 cut(s) 54, 88
BciT130I CCWGG 2 cut(s) 132, 329
BcnI CCSGG 2 cut(s) 77, 78
BcoDI GTCTC 1 cut(s) 236
BfoI RGCGCY 1 cut(s) 16
BfuAI ACCTGC 1 cut(s) 80
Bme1390I CCNGG 4 cut(s) 77, 78, 132, 329
Bme18I GGWCC 3 cut(s) 56, 69, 117
BmeT110I CYCGRG 1 cut(s) 76
BmgT120I GGNCC 4 cut(s) 56, 69, 79, 117
BmiI GGNNCC 1 cut(s) 119
BmrFI CCNGG 4 cut(s) 77, 78, 132, 329
BmrI ACTGGG 2 cut(s) 166, 304
BmsI GCATC 1 cut(s) 246
BmuI ACTGGG 2 cut(s) 166, 304
BpuMI CCSGG 2 cut(s) 77, 78
BsaHI GRCGYC 1 cut(s) 207
BsaI GGTCTC 1 cut(s) 236
BsaJI CCNNGG 3 cut(s) 76, 130, 202
BsaWI WCCGGW 1 cut(s) 114
Bse1I ACTGG 2 cut(s) 161, 299
BseBI CCWGG 2 cut(s) 132, 329
BseDI CCNNGG 3 cut(s) 76, 130, 202
BseGI GGATG 1 cut(s) 18
BseMII CTCAG 1 cut(s) 247
BseNI ACTGG 2 cut(s) 161, 299
BseRI GAGGAG 1 cut(s) 101
Bsh1236I CGCG 1 cut(s) 39
BshFI GGCC 5 cut(s) 81, 135, 213, 270, 327
BsiHKAI GWGCWC 1 cut(s) 165
BsiHKCI CYCGRG 1 cut(s) 76
BsiSI CCGG 2 cut(s) 77, 115
BslFI GGGAC 1 cut(s) 112
BsmAI GTCTC 1 cut(s) 236
BsmFI GGGAC 1 cut(s) 112
BsnI GGCC 5 cut(s) 81, 135, 213, 270, 327
Bso31I GGTCTC 1 cut(s) 236
BsoBI CYCGRG 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 165
Bsp143I GATC 1 cut(s) 229
Bsp68I TCGCGA 1 cut(s) 39
BspACI CCGC 1 cut(s) 7
BspANI GGCC 5 cut(s) 81, 135, 213, 270, 327
BspCNI CTCAG 1 cut(s) 246
BspFNI CGCG 1 cut(s) 39
BspLI GGNNCC 1 cut(s) 119
BspMI ACCTGC 1 cut(s) 80
BspTNI GGTCTC 1 cut(s) 236
BsrI ACTGG 2 cut(s) 161, 299
BssECI CCNNGG 3 cut(s) 76, 130, 202
BssMI GATC 1 cut(s) 229
BssNI GRCGYC 1 cut(s) 207
BssSI CACGAG 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 202
Bst2BI CACGAG 1 cut(s) 83
Bst2UI CCWGG 2 cut(s) 132, 329
Bst4CI ACNGT 3 cut(s) 28, 44, 322
Bst6I CTCTTC 1 cut(s) 113
BstACI GRCGYC 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 11
BstDEI CTNAG 3 cut(s) 222, 233, 333
BstEII GGTNACC 1 cut(s) 101
BstF5I GGATG 1 cut(s) 18
BstFNI CGCG 1 cut(s) 39
BstH2I RGCGCY 1 cut(s) 16
BstHHI GCGC 1 cut(s) 15
BstKTI GATC 1 cut(s) 232
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 1 cut(s) 229
BstMWI GCNNNNNNNGC 2 cut(s) 10, 267
BstNI CCWGG 2 cut(s) 132, 329
BstPI GGTNACC 1 cut(s) 101
BstSCI CCNGG 4 cut(s) 75, 76, 130, 327
BstUI CGCG 1 cut(s) 39
BsuRI GGCC 5 cut(s) 81, 135, 213, 270, 327
BtsCI GGATG 1 cut(s) 18
BtuMI TCGCGA 1 cut(s) 39
BveI ACCTGC 1 cut(s) 80
Cac8I GCNNGC 1 cut(s) 11
CfoI GCGC 1 cut(s) 15
Cfr13I GGNCC 4 cut(s) 56, 69, 79, 117
Cfr9I CCCGGG 1 cut(s) 76
CseI GACGC 1 cut(s) 196
Csp6I GTAC 1 cut(s) 275
CviQI GTAC 1 cut(s) 275
DdeI CTNAG 3 cut(s) 222, 233, 333
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
DrdI GACNNNNNNGTC 1 cut(s) 124
DseDI GACNNNNNNGTC 1 cut(s) 124
EaeI YGGCCR 1 cut(s) 325
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
Ecl136II GAGCTC 1 cut(s) 163
Eco130I CCWWGG 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 165
Eco31I GGTCTC 1 cut(s) 236
Eco47I GGWCC 3 cut(s) 56, 69, 117
Eco53kI GAGCTC 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 238
Eco88I CYCGRG 1 cut(s) 76
Eco91I GGTNACC 1 cut(s) 101
EcoICRI GAGCTC 1 cut(s) 163
EcoO65I GGTNACC 1 cut(s) 101
EcoRII CCWGG 2 cut(s) 130, 327
EcoT14I CCWWGG 1 cut(s) 202
EcoT38I GRGCYC 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 202
FaiI YATR 2 cut(s) 263, 313
FaqI GGGAC 1 cut(s) 112
FokI GGATG 1 cut(s) 5
FriOI GRGCYC 1 cut(s) 165
GlaI GCGC 1 cut(s) 14
HaeII RGCGCY 1 cut(s) 16
HaeIII GGCC 5 cut(s) 81, 135, 213, 270, 327
HapII CCGG 2 cut(s) 77, 115
HgaI GACGC 1 cut(s) 196
HhaI GCGC 1 cut(s) 15
Hin1I GRCGYC 1 cut(s) 207
Hin6I GCGC 1 cut(s) 13
HinP1I GCGC 1 cut(s) 13
HinfI GANTC 1 cut(s) 139
HpaII CCGG 2 cut(s) 77, 115
HphI GGTGA 2 cut(s) 169, 181
Hpy188I TCNGA 2 cut(s) 32, 60
Hpy188III TCNNGA 3 cut(s) 22, 38, 241
Hpy99I CGWCG 2 cut(s) 44, 212
HpyCH4III ACNGT 3 cut(s) 28, 44, 322
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 2 cut(s) 261, 315
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 267
HpyF3I CTNAG 3 cut(s) 222, 233, 333
HpySE526I ACGT 1 cut(s) 174
Hsp92I GRCGYC 1 cut(s) 207
HspAI GCGC 1 cut(s) 13
Kzo9I GATC 1 cut(s) 229
LmnI GCTCC 4 cut(s) 9, 88, 160, 168
LweI GCATC 1 cut(s) 246
MaeII ACGT 1 cut(s) 174
MaeIII GTNAC 3 cut(s) 101, 170, 175
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MboII GAAGA 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 165
MlsI TGGCCA 1 cut(s) 327
MluNI TGGCCA 1 cut(s) 327
MlyI GAGTC 1 cut(s) 133
MmeI TCCRAC 1 cut(s) 284
MnlI CCTC 7 cut(s) 26, 79, 116, 145, 197, 224, 260
Mox20I TGGCCA 1 cut(s) 327
MscI TGGCCA 1 cut(s) 327
Msp20I TGGCCA 1 cut(s) 327
MspI CCGG 2 cut(s) 77, 115
MspR9I CCNGG 4 cut(s) 77, 78, 132, 329
MvaI CCWGG 2 cut(s) 132, 329
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 2 cut(s) 10, 267
NciI CCSGG 2 cut(s) 77, 78
NdeII GATC 1 cut(s) 229
NlaIV GGNNCC 1 cut(s) 119
NmuCI GTSAC 1 cut(s) 175
NruI TCGCGA 1 cut(s) 39
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
Psp124BI GAGCTC 1 cut(s) 165
Psp6I CCWGG 2 cut(s) 130, 327
PspEI GGTNACC 1 cut(s) 101
PspGI CCWGG 2 cut(s) 130, 327
PspN4I GGNNCC 1 cut(s) 119
PspPI GGNCC 4 cut(s) 56, 69, 79, 117
RruI TCGCGA 1 cut(s) 39
RsaI GTAC 1 cut(s) 276
RsaNI GTAC 1 cut(s) 275
SacI GAGCTC 1 cut(s) 165
Sau3AI GATC 1 cut(s) 229
Sau96I GGNCC 4 cut(s) 56, 69, 79, 117
SchI GAGTC 1 cut(s) 133
ScrFI CCNGG 4 cut(s) 77, 78, 132, 329
SduI GDGCHC 1 cut(s) 165
SetI ASST 8 cut(s) 58, 74, 103, 108, 165, 177, 185, 260
SfaNI GCATC 1 cut(s) 246
SinI GGWCC 3 cut(s) 56, 69, 117
SmaI CCCGGG 1 cut(s) 78
SrfI GCCCGGGC 1 cut(s) 78
SsiI CCGC 1 cut(s) 7
SstI GAGCTC 1 cut(s) 165
StyD4I CCNGG 4 cut(s) 75, 76, 130, 327
StyI CCWWGG 1 cut(s) 202
TaaI ACNGT 3 cut(s) 28, 44, 322
TaiI ACGT 1 cut(s) 177
TaqI TCGA 2 cut(s) 142, 240
TseFI GTSAC 1 cut(s) 175
Tsp45I GTSAC 1 cut(s) 175
TspMI CCCGGG 1 cut(s) 76
VpaK11BI GGWCC 3 cut(s) 56, 69, 117
XmaI CCCGGG 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.