Prupe.5G050900_v2.0.a1

Golgin candidate

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
N/A
Physical Location & Seq
Reverse (-)
5450904 .. 5451107
204 bp
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UTR
Exon/CDS
Intron
Prupe.5G050900.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 204 bp
ATGGAAGCTGCTTATTTTTTAGAGAAGCAGAAACATGATAATACTAGAATGGAAGTCTTTGTACGTTTGGCTAAACTGGAGGCTGCAAATGCTGACCTTGCAAAATCCCTAGCCACCGTGCAATGGAATCTTGAAGAAGAGGTTAATCTTTTTTGTTCAAGTTCAACTCCTTTTGAAGCTGCTACCGTGCAAAAATATCTTTGA

Protein Analysis

68

Amino Acids

7.64

Weight (kDa)

4.97

Isoelectric Point (pI)

29.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 63
AfiI CCNNNNNNNGG 1 cut(s) 123
AgsI TTSAA 4 cut(s) 134, 159, 165, 176
AluBI AGCT 2 cut(s) 8, 179
AluI AGCT 2 cut(s) 8, 179
ApeKI GCWGC 3 cut(s) 8, 83, 179
BarI GAAGNNNNNNTAC 2 cut(s) 45, 77
BbvI GCAGC 2 cut(s) 70, 166
BfaI CTAG 2 cut(s) 45, 110
BisI GCNGC 3 cut(s) 9, 84, 180
BlsI GCNGC 3 cut(s) 10, 85, 181
BpmI CTGGAG 1 cut(s) 98
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse1I ACTGG 1 cut(s) 81
Bse3DI GCAATG 1 cut(s) 128
BseLI CCNNNNNNNGG 1 cut(s) 123
BseMI GCAATG 1 cut(s) 128
BseNI ACTGG 1 cut(s) 81
BseXI GCAGC 2 cut(s) 70, 166
BslI CCNNNNNNNGG 1 cut(s) 123
BsrDI GCAATG 1 cut(s) 128
BsrI ACTGG 1 cut(s) 81
Bst4CI ACNGT 2 cut(s) 118, 187
Bst6I CTCTTC 1 cut(s) 132
BstMWI GCNNNNNNNGC 2 cut(s) 89, 98
BstV1I GCAGC 2 cut(s) 70, 166
Csp6I GTAC 1 cut(s) 62
CviAII CATG 1 cut(s) 35
CviJI RGCY 5 cut(s) 8, 71, 83, 113, 179
CviKI_1 RGCY 5 cut(s) 8, 71, 83, 113, 179
CviQI GTAC 1 cut(s) 62
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
FaeI CATG 1 cut(s) 38
FaiI YATR 1 cut(s) 36
FatI CATG 1 cut(s) 34
Fnu4HI GCNGC 3 cut(s) 9, 84, 180
Fsp4HI GCNGC 3 cut(s) 9, 84, 180
FspBI CTAG 2 cut(s) 45, 110
GluI GCNGC 3 cut(s) 9, 84, 180
GsuI CTGGAG 1 cut(s) 98
Hin1II CATG 1 cut(s) 38
HinfI GANTC 1 cut(s) 127
Hpy188III TCNNGA 1 cut(s) 131
HpyCH4III ACNGT 2 cut(s) 118, 187
HpyCH4IV ACGT 1 cut(s) 64
HpyCH4V TGCA 4 cut(s) 86, 101, 121, 190
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 98
HpySE526I ACGT 1 cut(s) 64
Hsp92II CATG 1 cut(s) 38
LpnPI CCDG 1 cut(s) 62
Lsp1109I GCAGC 2 cut(s) 70, 166
MaeI CTAG 2 cut(s) 45, 110
MaeII ACGT 1 cut(s) 64
MboII GAAGA 2 cut(s) 146, 149
MnlI CCTC 2 cut(s) 73, 133
MseI TTAA 1 cut(s) 144
MwoI GCNNNNNNNGC 2 cut(s) 89, 98
NlaIII CATG 1 cut(s) 38
PfeI GAWTC 1 cut(s) 127
PkrI GCNGC 3 cut(s) 10, 85, 181
RsaI GTAC 1 cut(s) 63
RsaNI GTAC 1 cut(s) 62
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 3 cut(s) 9, 84, 180
SetI ASST 5 cut(s) 10, 67, 99, 144, 181
SgeI CNNG 9 cut(s) 47, 57, 89, 110, 122, 130, 143, 171, 199
SspMI CTAG 2 cut(s) 45, 110
TaaI ACNGT 2 cut(s) 118, 187
TaiI ACGT 1 cut(s) 67
TfiI GAWTC 1 cut(s) 127
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TseI GCWGC 3 cut(s) 8, 83, 179
XspI CTAG 2 cut(s) 45, 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.