Prupe.5G055700_v2.0.a1

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
N/A
Physical Location & Seq
Forward (+)
5984956 .. 5985861
906 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G055700.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 639 bp
ATGGCTCTCACAAATCAAGACCAGTACCTCTGCTTAGCTTTTCCTTTCATTTTGGCCATTTGCTCCTCTCAAGCATCGTCTCGCCAAATTTATTATGATGCTGAGGAGAAAGAGAGGCTATTCGTGATATTCAAGGCCAACTTGGAGTTCATTAAGGCTTTTAACAAACACATGAGCCAGAACTACTTCACTCTAAGCTTAAATGAATTTGCAGACCTAACCAATGAGGAGTTTCAGGAAATTCGTAATGGTTACACGAAACGATCCTCCAAATCGATCATGTCCAATTCCACGAAAGCTACATTGGAATGGAGAGAAAAGGGTGCAGTGACGCCTATCAAGGACCAAGGCAAATGTTGGTGTTGTTGGGCATTCTCAGCAGTGGCAGCTACAAAAGGGGATAACAAGCTCAAAACCAGAAACTTAATCTCACTATCAGAGCAAGAGCTTGTGGATTATGACACGACAGGTCAAGATCATGGCTGTGAAGGTGGTCTAATGGATGACGCTTTTCAATTCATCCAACGGAACAAAGTGTCCATAAACGGGTACGAGGATGTGCCTAAAAACAACCAAAATGCTATGTTGCAAGCCGTCGCTAACCAACCAATTTCTTTTGGAATTCAGACTATGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009791 GO:0009814 GO:0009817 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010150 GO:0010224 GO:0010282 GO:0010623 GO:0012501 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0034284 GO:0034285 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046688 GO:0048366 GO:0048367 GO:0048437 GO:0048468 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0080187 GO:0090567 GO:0090693 GO:0097501 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1990169
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

213

Amino Acids

24.08

Weight (kDa)

5.5

Isoelectric Point (pI)

37.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 258
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 4 cut(s) 87, 206, 240, 621
AcyI GRCGYC 1 cut(s) 332
AfaI GTAC 2 cut(s) 26, 551
AfiI CCNNNNNNNGG 1 cut(s) 546
AgsI TTSAA 2 cut(s) 133, 515
AjuI GAANNNNNNNTTGG 4 cut(s) 131, 163, 287, 319
AloI GAACNNNNNNTCC 2 cut(s) 521, 553
AluBI AGCT 6 cut(s) 38, 198, 299, 389, 409, 448
AluI AGCT 6 cut(s) 38, 198, 299, 389, 409, 448
Alw26I GTCTC 1 cut(s) 84
AlwI GGATC 1 cut(s) 258
AoxI GGCC 2 cut(s) 54, 135
ApeKI GCWGC 1 cut(s) 386
ApoI RAATTY 4 cut(s) 87, 206, 240, 621
Asp700I GAANNNNTTC 1 cut(s) 185
AspS9I GGNCC 1 cut(s) 343
AvaII GGWCC 1 cut(s) 343
BalI TGGCCA 1 cut(s) 56
BbvCI CCTCAGC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 398
BceAI ACGGC 1 cut(s) 578
BcoDI GTCTC 1 cut(s) 84
BisI GCNGC 1 cut(s) 387
BlpI GCTNAGC 1 cut(s) 34
BlsI GCNGC 1 cut(s) 388
Bme18I GGWCC 1 cut(s) 343
BmgT120I GGNCC 1 cut(s) 343
BmsI GCATC 2 cut(s) 83, 88
Bpu10I CCTNAGC 1 cut(s) 102
Bpu1102I GCTNAGC 1 cut(s) 34
BpuEI CTTGAG 1 cut(s) 54
Bsa29I ATCGAT 1 cut(s) 275
BsaHI GRCGYC 1 cut(s) 332
BsaJI CCNNGG 1 cut(s) 346
Bsc4I CCNNNNNNNGG 1 cut(s) 546
Bse1I ACTGG 1 cut(s) 22
BseCI ATCGAT 1 cut(s) 275
BseDI CCNNGG 1 cut(s) 346
BseGI GGATG 3 cut(s) 508, 519, 562
BseLI CCNNNNNNNGG 1 cut(s) 546
BseMII CTCAG 2 cut(s) 93, 390
BseNI ACTGG 1 cut(s) 22
BseRI GAGGAG 3 cut(s) 55, 119, 242
BseXI GCAGC 1 cut(s) 398
BsgI GTGCAG 1 cut(s) 345
BshFI GGCC 2 cut(s) 56, 137
BshVI ATCGAT 1 cut(s) 275
BslI CCNNNNNNNGG 1 cut(s) 546
BsmAI GTCTC 1 cut(s) 84
BsmBI CGTCTC 1 cut(s) 84
BsmI GAATGC 1 cut(s) 371
BsnI GGCC 2 cut(s) 56, 137
Bsp143I GATC 4 cut(s) 263, 276, 475, 633
Bsp1720I GCTNAGC 1 cut(s) 34
BspANI GGCC 2 cut(s) 56, 137
BspCNI CTCAG 2 cut(s) 94, 389
BspDI ATCGAT 1 cut(s) 275
BspPI GGATC 1 cut(s) 258
BsrI ACTGG 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 346
BssMI GATC 4 cut(s) 263, 276, 475, 633
BssNI GRCGYC 1 cut(s) 332
BssT1I CCWWGG 1 cut(s) 346
BstACI GRCGYC 1 cut(s) 332
BstC8I GCNNGC 1 cut(s) 591
BstDEI CTNAG 4 cut(s) 34, 102, 194, 376
BstF5I GGATG 3 cut(s) 508, 519, 562
BstKTI GATC 4 cut(s) 266, 279, 478, 636
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 4 cut(s) 263, 276, 475, 633
BstMWI GCNNNNNNNGC 2 cut(s) 377, 386
BstV1I GCAGC 1 cut(s) 398
Bsu15I ATCGAT 1 cut(s) 275
BsuRI GGCC 2 cut(s) 56, 137
BsuTUI ATCGAT 1 cut(s) 275
BtsCI GGATG 3 cut(s) 508, 519, 562
BtsI GCAGTG 2 cut(s) 333, 387
BtsIMutI CAGTG 2 cut(s) 333, 387
Cac8I GCNNGC 1 cut(s) 591
Cfr13I GGNCC 1 cut(s) 343
ClaI ATCGAT 1 cut(s) 275
CseI GACGC 2 cut(s) 340, 515
Csp6I GTAC 2 cut(s) 25, 550
CviAII CATG 3 cut(s) 172, 280, 479
CviQI GTAC 2 cut(s) 25, 550
DdeI CTNAG 4 cut(s) 34, 102, 194, 376
DpnI GATC 4 cut(s) 265, 278, 477, 635
DpnII GATC 4 cut(s) 263, 276, 475, 633
EaeI YGGCCR 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 346
Eco47I GGWCC 1 cut(s) 343
EcoRI GAATTC 1 cut(s) 621
EcoT14I CCWWGG 1 cut(s) 346
ErhI CCWWGG 1 cut(s) 346
Esp3I CGTCTC 1 cut(s) 84
FaeI CATG 3 cut(s) 175, 283, 482
FaiI YATR 8 cut(s) 96, 173, 281, 459, 480, 542, 584, 632
FalI AAGNNNNNCTT 2 cut(s) 125, 157
FatI CATG 3 cut(s) 171, 279, 478
Fnu4HI GCNGC 1 cut(s) 387
FokI GGATG 3 cut(s) 506, 515, 569
Fsp4HI GCNGC 1 cut(s) 387
GluI GCNGC 1 cut(s) 387
HaeIII GGCC 2 cut(s) 56, 137
HgaI GACGC 2 cut(s) 340, 515
Hin1I GRCGYC 1 cut(s) 332
Hin1II CATG 3 cut(s) 175, 283, 482
HindIII AAGCTT 1 cut(s) 196
Hpy188I TCNGA 3 cut(s) 439, 627, 638
Hpy188III TCNNGA 4 cut(s) 17, 124, 236, 473
Hpy99I CGWCG 1 cut(s) 599
HpyAV CCTTC 1 cut(s) 482
HpyCH4V TGCA 3 cut(s) 212, 326, 589
HpyF10VI GCNNNNNNNGC 2 cut(s) 377, 386
HpyF3I CTNAG 4 cut(s) 34, 102, 194, 376
Hsp92I GRCGYC 1 cut(s) 332
Hsp92II CATG 3 cut(s) 175, 283, 482
Kzo9I GATC 4 cut(s) 263, 276, 475, 633
LmnI GCTCC 1 cut(s) 68
LpnPI CCDG 5 cut(s) 35, 191, 221, 430, 453
Lsp1109I GCAGC 1 cut(s) 398
LweI GCATC 2 cut(s) 83, 88
MaeIII GTNAC 2 cut(s) 251, 328
MalI GATC 4 cut(s) 265, 278, 477, 635
MboI GATC 4 cut(s) 263, 276, 475, 633
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 7 cut(s) 87, 206, 240, 286, 515, 609, 621
MluNI TGGCCA 1 cut(s) 56
MmeI TCCRAC 1 cut(s) 547
MnlI CCTC 7 cut(s) 38, 76, 97, 108, 220, 277, 547
Mox20I TGGCCA 1 cut(s) 56
MroXI GAANNNNTTC 1 cut(s) 185
MscI TGGCCA 1 cut(s) 56
MseI TTAA 4 cut(s) 153, 162, 200, 425
MslI CAYNNNNRTG 2 cut(s) 307, 483
Msp20I TGGCCA 1 cut(s) 56
Mva1269I GAATGC 1 cut(s) 371
MwoI GCNNNNNNNGC 2 cut(s) 377, 386
NdeII GATC 4 cut(s) 263, 276, 475, 633
NlaIII CATG 3 cut(s) 175, 283, 482
NmuCI GTSAC 1 cut(s) 328
PctI GAATGC 1 cut(s) 371
PdmI GAANNNNTTC 1 cut(s) 185
PkrI GCNGC 1 cut(s) 388
PspPI GGNCC 1 cut(s) 343
RsaI GTAC 2 cut(s) 26, 551
RsaNI GTAC 2 cut(s) 25, 550
RseI CAYNNNNRTG 2 cut(s) 307, 483
SaqAI TTAA 4 cut(s) 153, 162, 200, 425
SatI GCNGC 1 cut(s) 387
Sau3AI GATC 4 cut(s) 263, 276, 475, 633
Sau96I GGNCC 1 cut(s) 343
SfaNI GCATC 2 cut(s) 83, 88
SinI GGWCC 1 cut(s) 343
SmiMI CAYNNNNRTG 2 cut(s) 307, 483
SmlI CTYRAG 1 cut(s) 69
SmoI CTYRAG 1 cut(s) 69
Sse9I AATT 7 cut(s) 87, 206, 240, 286, 515, 609, 621
StyI CCWWGG 1 cut(s) 346
TaqI TCGA 1 cut(s) 275
TasI AATT 7 cut(s) 87, 206, 240, 286, 515, 609, 621
Tru1I TTAA 4 cut(s) 153, 162, 200, 425
Tru9I TTAA 4 cut(s) 153, 162, 200, 425
TscAI CASTG 2 cut(s) 333, 387
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 1 cut(s) 386
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 4 cut(s) 37, 139, 219, 508
TspGWI ACGGA 1 cut(s) 541
TspRI CASTG 2 cut(s) 333, 387
VpaK11BI GGWCC 1 cut(s) 343
XapI RAATTY 4 cut(s) 87, 206, 240, 621
XmnI GAANNNNTTC 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.