Prupe.5G056100_v2.0.a1

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
N/A
Physical Location & Seq
Forward (+)
6046778 .. 6047916
1139 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G056100.1_v2.0.a1.CDS.4

Sequence Viewer

Length: 630 bp
ATGGCTCTCACAAATCAAGGCCAGTACCTCTGCTTAGCTTTTCTTTTCATTTTGGCCATTTGCTCCTCTCAAGCATCGTCACGCCAAATTTATGATGAGAAAACCATGTTGGCGAGACATGAAGACTGGATGGCTCAATTTGGGCCAAACTACTTCACTCTAAGCTTAAATGAATTTGCAGACCTAACCAATGAGGAGTTTCAGGAAATTCGTAATGGTTACACGAAACGATCCTCCAAATCGATCATGCTGACAACTGAAGCTAATCACTCCTACCGGGGTGTAGATGGAACTAGTTGCAACACTCAGAAAGCTGCATCCCAAACAGTGTCCATAAACGGGTACGAGGATGTGCCTAAAAACAACCAAAATGCTATGTTGCAAGCCGTCGCTAACCAACCAATTTCGGTTGCCATTGACGCAAGTGGCTGTACCTTCCAGTTTTATTCAAATCATGGTGTTACTGCAGTTGGATACGGGACTAGTAGTGATGGGACTAAATACTGGCTGGTGAAGAATTCTTGGGGCACAGGGTGGGGGGAGGGTGGATATGTGATGATGCAAAGGGGCATTCCTGCCAAGGAAGGACTCTGTGGCATTGCTATGGAAGCTTCTTATCCAACCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009791 GO:0009814 GO:0009817 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010150 GO:0010224 GO:0010282 GO:0010623 GO:0012501 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0034284 GO:0034285 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046688 GO:0048366 GO:0048367 GO:0048437 GO:0048468 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0080187 GO:0090567 GO:0090693 GO:0097501 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1990169
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

210

Amino Acids

22.92

Weight (kDa)

5.35

Isoelectric Point (pI)

27.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 624
AclWI GGATC 1 cut(s) 225
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 4 cut(s) 87, 173, 207, 517
AcuI CTGAAG 1 cut(s) 279
AdeI CACNNNGTG 1 cut(s) 534
AfaI GTAC 3 cut(s) 26, 344, 433
AfiI CCNNNNNNNGG 1 cut(s) 339
AgsI TTSAA 1 cut(s) 450
AhlI ACTAGT 2 cut(s) 293, 482
AjuI GAANNNNNNNTTGG 2 cut(s) 92, 124
AluBI AGCT 5 cut(s) 38, 165, 263, 314, 611
AluI AGCT 5 cut(s) 38, 165, 263, 314, 611
Alw26I GTCTC 1 cut(s) 109
AlwI GGATC 1 cut(s) 225
AoxI GGCC 3 cut(s) 19, 54, 143
ApeKI GCWGC 1 cut(s) 314
ApoI RAATTY 4 cut(s) 87, 173, 207, 517
AspS9I GGNCC 1 cut(s) 143
AsuC2I CCSGG 1 cut(s) 278
AsuHPI GGTGA 1 cut(s) 523
BaeGI GKGCMC 1 cut(s) 530
BalI TGGCCA 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 301
BccI CCATC 3 cut(s) 124, 281, 485
BceAI ACGGC 1 cut(s) 371
BciVI GTATCC 1 cut(s) 467
BcnI CCSGG 1 cut(s) 278
BcoDI GTCTC 1 cut(s) 109
BcuI ACTAGT 2 cut(s) 293, 482
BfaI CTAG 2 cut(s) 294, 483
BfmI CTRYAG 1 cut(s) 465
BfuI GTATCC 1 cut(s) 467
BisI GCNGC 1 cut(s) 315
BlpI GCTNAGC 1 cut(s) 34
BlsI GCNGC 1 cut(s) 316
Bme1390I CCNGG 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 143
BmrFI CCNGG 1 cut(s) 278
BmsI GCATC 3 cut(s) 83, 326, 549
BpiI GAAGAC 1 cut(s) 129
Bpu1102I GCTNAGC 1 cut(s) 34
BpuEI CTTGAG 1 cut(s) 54
BpuMI CCSGG 1 cut(s) 278
Bsa29I ATCGAT 1 cut(s) 242
BsaJI CCNNGG 2 cut(s) 277, 579
Bsc4I CCNNNNNNNGG 1 cut(s) 339
Bse1I ACTGG 4 cut(s) 22, 131, 439, 509
Bse3DI GCAATG 1 cut(s) 597
BseCI ATCGAT 1 cut(s) 242
BseDI CCNNGG 2 cut(s) 277, 579
BseGI GGATG 3 cut(s) 135, 317, 355
BseLI CCNNNNNNNGG 1 cut(s) 339
BseMI GCAATG 1 cut(s) 597
BseMII CTCAG 1 cut(s) 320
BseNI ACTGG 4 cut(s) 22, 131, 439, 509
BseRI GAGGAG 2 cut(s) 55, 209
BseSI GKGCMC 1 cut(s) 530
BseXI GCAGC 1 cut(s) 301
BshFI GGCC 3 cut(s) 21, 56, 145
BshVI ATCGAT 1 cut(s) 242
BsiSI CCGG 1 cut(s) 277
BslFI GGGAC 2 cut(s) 493, 508
BslI CCNNNNNNNGG 1 cut(s) 339
BsmAI GTCTC 1 cut(s) 109
BsmFI GGGAC 2 cut(s) 493, 508
BsmI GAATGC 1 cut(s) 570
BsnI GGCC 3 cut(s) 21, 56, 145
Bsp1286I GDGCHC 1 cut(s) 530
Bsp143I GATC 2 cut(s) 230, 243
Bsp1720I GCTNAGC 1 cut(s) 34
BspACI CCGC 1 cut(s) 624
BspANI GGCC 3 cut(s) 21, 56, 145
BspCNI CTCAG 1 cut(s) 319
BspDI ATCGAT 1 cut(s) 242
BspMAI CTGCAG 1 cut(s) 469
BspPI GGATC 1 cut(s) 225
BsrDI GCAATG 1 cut(s) 597
BsrI ACTGG 4 cut(s) 22, 131, 439, 509
BssECI CCNNGG 2 cut(s) 277, 579
BssMI GATC 2 cut(s) 230, 243
BssT1I CCWWGG 1 cut(s) 579
Bst4CI ACNGT 1 cut(s) 328
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 3 cut(s) 34, 161, 306
BstF5I GGATG 3 cut(s) 135, 317, 355
BstKTI GATC 2 cut(s) 233, 246
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 2 cut(s) 230, 243
BstMWI GCNNNNNNNGC 2 cut(s) 419, 608
BstSCI CCNGG 1 cut(s) 276
BstSFI CTRYAG 1 cut(s) 465
BstSLI GKGCMC 1 cut(s) 530
BstV1I GCAGC 1 cut(s) 301
BstV2I GAAGAC 1 cut(s) 129
Bsu15I ATCGAT 1 cut(s) 242
BsuI GTATCC 1 cut(s) 467
BsuRI GGCC 3 cut(s) 21, 56, 145
BsuTUI ATCGAT 1 cut(s) 242
BtsCI GGATG 3 cut(s) 135, 317, 355
BtsIMutI CAGTG 1 cut(s) 333
Cac8I GCNNGC 1 cut(s) 384
Cfr13I GGNCC 1 cut(s) 143
ClaI ATCGAT 1 cut(s) 242
CseI GACGC 1 cut(s) 428
Csp6I GTAC 3 cut(s) 25, 343, 432
CviAII CATG 5 cut(s) 106, 119, 247, 455, 627
CviQI GTAC 3 cut(s) 25, 343, 432
DdeI CTNAG 3 cut(s) 34, 161, 306
DpnI GATC 2 cut(s) 232, 245
DpnII GATC 2 cut(s) 230, 243
DraIII CACNNNGTG 1 cut(s) 534
EaeI YGGCCR 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 579
Eco57I CTGAAG 1 cut(s) 279
EcoRI GAATTC 1 cut(s) 517
EcoT14I CCWWGG 1 cut(s) 579
ErhI CCWWGG 1 cut(s) 579
FaeI CATG 5 cut(s) 109, 122, 250, 458, 630
FaqI GGGAC 2 cut(s) 493, 508
FatI CATG 5 cut(s) 105, 118, 246, 454, 626
Fnu4HI GCNGC 1 cut(s) 315
FokI GGATG 3 cut(s) 142, 304, 362
Fsp4HI GCNGC 1 cut(s) 315
FspBI CTAG 2 cut(s) 294, 483
GluI GCNGC 1 cut(s) 315
HaeIII GGCC 3 cut(s) 21, 56, 145
HapII CCGG 1 cut(s) 277
HgaI GACGC 1 cut(s) 428
Hin1II CATG 5 cut(s) 109, 122, 250, 458, 630
HindIII AAGCTT 2 cut(s) 163, 609
HinfI GANTC 1 cut(s) 588
HpaII CCGG 1 cut(s) 277
HphI GGTGA 1 cut(s) 523
Hpy188I TCNGA 1 cut(s) 309
Hpy188III TCNNGA 1 cut(s) 203
Hpy99I CGWCG 1 cut(s) 392
HpyAV CCTTC 2 cut(s) 445, 578
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4V TGCA 6 cut(s) 179, 300, 317, 382, 467, 562
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 608
HpyF3I CTNAG 3 cut(s) 34, 161, 306
Hsp92II CATG 5 cut(s) 109, 122, 250, 458, 630
Kzo9I GATC 2 cut(s) 230, 243
LmnI GCTCC 1 cut(s) 68
LpnPI CCDG 9 cut(s) 35, 112, 188, 290, 452, 490, 494, 516, 588
Lsp1109I GCAGC 1 cut(s) 301
LweI GCATC 3 cut(s) 83, 326, 549
MaeI CTAG 2 cut(s) 294, 483
MaeIII GTNAC 3 cut(s) 78, 218, 460
MalI GATC 2 cut(s) 232, 245
MboI GATC 2 cut(s) 230, 243
MboII GAAGA 2 cut(s) 134, 526
MhlI GDGCHC 1 cut(s) 530
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 6 cut(s) 87, 137, 173, 207, 402, 517
MluNI TGGCCA 1 cut(s) 56
MlyI GAGTC 1 cut(s) 582
MmeI TCCRAC 1 cut(s) 451
MnlI CCTC 6 cut(s) 38, 76, 187, 244, 340, 535
Mox20I TGGCCA 1 cut(s) 56
MscI TGGCCA 1 cut(s) 56
MseI TTAA 1 cut(s) 167
MslI CAYNNNNRTG 1 cut(s) 602
Msp20I TGGCCA 1 cut(s) 56
MspI CCGG 1 cut(s) 277
MspR9I CCNGG 1 cut(s) 278
Mva1269I GAATGC 1 cut(s) 570
MwoI GCNNNNNNNGC 2 cut(s) 419, 608
NciI CCSGG 1 cut(s) 278
NdeII GATC 2 cut(s) 230, 243
NlaIII CATG 5 cut(s) 109, 122, 250, 458, 630
NmuCI GTSAC 1 cut(s) 78
PctI GAATGC 1 cut(s) 570
PkrI GCNGC 1 cut(s) 316
PleI GAGTC 1 cut(s) 582
PpsI GAGTC 1 cut(s) 582
PspPI GGNCC 1 cut(s) 143
PstI CTGCAG 1 cut(s) 469
RsaI GTAC 3 cut(s) 26, 344, 433
RsaNI GTAC 3 cut(s) 25, 343, 432
RseI CAYNNNNRTG 1 cut(s) 602
SaqAI TTAA 1 cut(s) 167
SatI GCNGC 1 cut(s) 315
Sau3AI GATC 2 cut(s) 230, 243
Sau96I GGNCC 1 cut(s) 143
SchI GAGTC 1 cut(s) 582
ScrFI CCNGG 1 cut(s) 278
SduI GDGCHC 1 cut(s) 530
SetI ASST 8 cut(s) 30, 40, 167, 186, 265, 316, 437, 613
SfaNI GCATC 3 cut(s) 83, 326, 549
SfcI CTRYAG 1 cut(s) 465
SmiMI CAYNNNNRTG 1 cut(s) 602
SmlI CTYRAG 1 cut(s) 69
SmoI CTYRAG 1 cut(s) 69
SpeI ACTAGT 2 cut(s) 293, 482
Sse9I AATT 6 cut(s) 87, 137, 173, 207, 402, 517
SsiI CCGC 1 cut(s) 624
SspMI CTAG 2 cut(s) 294, 483
StyD4I CCNGG 1 cut(s) 276
StyI CCWWGG 1 cut(s) 579
TaaI ACNGT 1 cut(s) 328
TaqI TCGA 1 cut(s) 242
TasI AATT 6 cut(s) 87, 137, 173, 207, 402, 517
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TscAI CASTG 1 cut(s) 333
TseFI GTSAC 1 cut(s) 78
TseI GCWGC 1 cut(s) 314
Tsp45I GTSAC 1 cut(s) 78
TspDTI ATGAA 3 cut(s) 37, 135, 186
TspRI CASTG 1 cut(s) 333
XapI RAATTY 4 cut(s) 87, 173, 207, 517
XspI CTAG 2 cut(s) 294, 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.