Prupe.5G056700_v2.0.a1

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
N/A
Physical Location & Seq
Forward (+)
6104847 .. 6105743
897 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G056700.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 564 bp
ATGAGGAAAAGGACGGCTCACAACAAGTTTATGTCTATAAAATCCCAGATGCTCATGAGCCAGAACTACTTCATTCTAAGCTTAAATGAATTTGCAGACCTAACCAATGAGGAGTTTCGGGAAATTCGTGATGGTTACATGAAACAATCCTCCAAATCGATCATGTCCAATTCCACGAAAGCTACATGTCAAGATCATGGCTGTGAAGGTGATCTAATGGATGACGGTTTTCAATTCATCCAACGCAACAAAAGGCTGACAACTGAAGTTAATCACTCCCACCAGGGTGTAGATGGAACTACCGTCGCTAACGAACCAATTTCGGTTGCCATTGACGCAAGTGGCTGTACATTCCAGTTTTATTCAAGTGGTGTGTACACTGGAACATGTGGTATAAACTTAGATCATGGTGCGGGACTAGTAGTGATGGGACTAAATACTGGCTGGGGAGGAATTCTTGGGGCACGGTGCGGGGAGAGTGGATATGTGACGATGCAAAGGGGCATTCCTTCCAAGGAAGGACTCTGTGGCATTGCTATTGAACCTTCTTATCCAACCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009791 GO:0009814 GO:0009817 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010150 GO:0010224 GO:0010282 GO:0010623 GO:0012501 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0034284 GO:0034285 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046688 GO:0048366 GO:0048367 GO:0048437 GO:0048468 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0080187 GO:0090567 GO:0090693 GO:0097501 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1990169
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

188

Amino Acids

20.39

Weight (kDa)

5.93

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 413, 471, 558
AcsI RAATTY 3 cut(s) 89, 123, 453
AcuI CTGAAG 1 cut(s) 285
AfaI GTAC 2 cut(s) 349, 377
AflIII ACRYGT 2 cut(s) 185, 386
AgsI TTSAA 3 cut(s) 233, 366, 542
AhlI ACTAGT 1 cut(s) 418
AjnI CCWGG 1 cut(s) 282
AleI CACNNNNGTG 1 cut(s) 285
AluBI AGCT 2 cut(s) 81, 182
AluI AGCT 2 cut(s) 81, 182
ApoI RAATTY 3 cut(s) 89, 123, 453
Asp700I GAANNNNTTC 1 cut(s) 68
AsuHPI GGTGA 1 cut(s) 221
BaeGI GKGCMC 1 cut(s) 466
BccI CCATC 3 cut(s) 125, 287, 421
BceAI ACGGC 1 cut(s) 30
BciT130I CCWGG 1 cut(s) 284
BcuI ACTAGT 1 cut(s) 418
BfaI CTAG 1 cut(s) 419
Bme1390I CCNGG 1 cut(s) 284
BmrFI CCNGG 1 cut(s) 284
BmsI GCATC 2 cut(s) 39, 483
Bsa29I ATCGAT 1 cut(s) 158
BsaJI CCNNGG 2 cut(s) 283, 513
Bse1I ACTGG 3 cut(s) 355, 385, 445
Bse3DI GCAATG 1 cut(s) 531
BseBI CCWGG 1 cut(s) 284
BseCI ATCGAT 1 cut(s) 158
BseDI CCNNGG 2 cut(s) 283, 513
BseGI GGATG 2 cut(s) 226, 237
BseMI GCAATG 1 cut(s) 531
BseNI ACTGG 3 cut(s) 355, 385, 445
BseRI GAGGAG 1 cut(s) 125
BseSI GKGCMC 1 cut(s) 466
BseYI CCCAGC 1 cut(s) 444
BshVI ATCGAT 1 cut(s) 158
BslFI GGGAC 2 cut(s) 429, 444
BsmFI GGGAC 2 cut(s) 429, 444
BsmI GAATGC 1 cut(s) 504
Bsp1286I GDGCHC 1 cut(s) 466
Bsp1407I TGTACA 2 cut(s) 347, 375
Bsp143I GATC 4 cut(s) 159, 193, 211, 403
BspACI CCGC 3 cut(s) 413, 471, 558
BspDI ATCGAT 1 cut(s) 158
BspHI TCATGA 1 cut(s) 54
BsrDI GCAATG 1 cut(s) 531
BsrGI TGTACA 2 cut(s) 347, 375
BsrI ACTGG 3 cut(s) 355, 385, 445
BssECI CCNNGG 2 cut(s) 283, 513
BssMI GATC 4 cut(s) 159, 193, 211, 403
BssT1I CCWWGG 1 cut(s) 513
Bst2UI CCWGG 1 cut(s) 284
Bst4CI ACNGT 3 cut(s) 227, 304, 468
BstAUI TGTACA 2 cut(s) 347, 375
BstDEI CTNAG 2 cut(s) 77, 400
BstF5I GGATG 2 cut(s) 226, 237
BstKTI GATC 4 cut(s) 162, 196, 214, 406
BstMBI GATC 4 cut(s) 159, 193, 211, 403
BstMWI GCNNNNNNNGC 1 cut(s) 335
BstNI CCWGG 1 cut(s) 284
BstNSI RCATGY 2 cut(s) 189, 390
BstSCI CCNGG 1 cut(s) 282
BstSLI GKGCMC 1 cut(s) 466
Bsu15I ATCGAT 1 cut(s) 158
BsuTUI ATCGAT 1 cut(s) 158
BtsCI GGATG 2 cut(s) 226, 237
BtsIMutI CAGTG 1 cut(s) 378
CciI TCATGA 1 cut(s) 54
ClaI ATCGAT 1 cut(s) 158
CseI GACGC 1 cut(s) 344
Csp6I GTAC 2 cut(s) 348, 376
CviAII CATG 8 cut(s) 55, 139, 163, 186, 197, 387, 407, 561
CviJI RGCY 8 cut(s) 17, 60, 81, 182, 201, 256, 345, 444
CviKI_1 RGCY 8 cut(s) 17, 60, 81, 182, 201, 256, 345, 444
CviQI GTAC 2 cut(s) 348, 376
DdeI CTNAG 2 cut(s) 77, 400
DpnI GATC 4 cut(s) 161, 195, 213, 405
DpnII GATC 4 cut(s) 159, 193, 211, 403
Eco130I CCWWGG 1 cut(s) 513
Eco57I CTGAAG 1 cut(s) 285
EcoRI GAATTC 1 cut(s) 453
EcoRII CCWGG 1 cut(s) 282
EcoT14I CCWWGG 1 cut(s) 513
ErhI CCWWGG 1 cut(s) 513
FaeI CATG 8 cut(s) 58, 142, 166, 189, 200, 390, 410, 564
FaqI GGGAC 2 cut(s) 429, 444
FatI CATG 8 cut(s) 54, 138, 162, 185, 196, 386, 406, 560
FauI CCCGC 2 cut(s) 406, 464
FokI GGATG 2 cut(s) 224, 233
FspBI CTAG 1 cut(s) 419
GsaI CCCAGC 1 cut(s) 448
HgaI GACGC 1 cut(s) 344
Hin1II CATG 8 cut(s) 58, 142, 166, 189, 200, 390, 410, 564
HindIII AAGCTT 1 cut(s) 79
HinfI GANTC 1 cut(s) 522
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 2 cut(s) 376, 378
Hpy188III TCNNGA 4 cut(s) 55, 119, 128, 191
Hpy8I GTNNAC 2 cut(s) 376, 378
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 4 cut(s) 200, 512, 519, 555
HpyCH4III ACNGT 3 cut(s) 227, 304, 468
HpyCH4V TGCA 2 cut(s) 95, 496
HpyF10VI GCNNNNNNNGC 1 cut(s) 335
HpyF3I CTNAG 2 cut(s) 77, 400
Hsp92II CATG 8 cut(s) 58, 142, 166, 189, 200, 390, 410, 564
Kzo9I GATC 4 cut(s) 159, 193, 211, 403
LpnPI CCDG 8 cut(s) 59, 74, 269, 296, 366, 368, 426, 430
LweI GCATC 2 cut(s) 39, 483
MaeI CTAG 1 cut(s) 419
MaeIII GTNAC 2 cut(s) 134, 487
MalI GATC 4 cut(s) 161, 195, 213, 405
MboI GATC 4 cut(s) 159, 193, 211, 403
MhlI GDGCHC 1 cut(s) 466
MluCI AATT 6 cut(s) 89, 123, 169, 233, 318, 453
MlyI GAGTC 1 cut(s) 516
MmeI TCCRAC 1 cut(s) 265
MnlI CCTC 3 cut(s) 103, 160, 443
MroXI GAANNNNTTC 1 cut(s) 68
MseI TTAA 2 cut(s) 83, 270
MslI CAYNNNNRTG 2 cut(s) 201, 285
MspR9I CCNGG 1 cut(s) 284
Mva1269I GAATGC 1 cut(s) 504
MvaI CCWGG 1 cut(s) 284
MwoI GCNNNNNNNGC 1 cut(s) 335
NdeII GATC 4 cut(s) 159, 193, 211, 403
NlaIII CATG 8 cut(s) 58, 142, 166, 189, 200, 390, 410, 564
NmuCI GTSAC 1 cut(s) 487
NspI RCATGY 2 cut(s) 189, 390
OliI CACNNNNGTG 1 cut(s) 285
PagI TCATGA 1 cut(s) 54
PciI ACATGT 2 cut(s) 185, 386
PcsI WCGNNNNNNNCGW 1 cut(s) 124
PctI GAATGC 1 cut(s) 504
PdmI GAANNNNTTC 1 cut(s) 68
PleI GAGTC 1 cut(s) 516
PpsI GAGTC 1 cut(s) 516
PscI ACATGT 2 cut(s) 185, 386
Psp6I CCWGG 1 cut(s) 282
PspFI CCCAGC 1 cut(s) 444
PspGI CCWGG 1 cut(s) 282
RsaI GTAC 2 cut(s) 349, 377
RsaNI GTAC 2 cut(s) 348, 376
RseI CAYNNNNRTG 2 cut(s) 201, 285
SaqAI TTAA 2 cut(s) 83, 270
Sau3AI GATC 4 cut(s) 159, 193, 211, 403
SchI GAGTC 1 cut(s) 516
ScrFI CCNGG 1 cut(s) 284
SduI GDGCHC 1 cut(s) 466
SetI ASST 5 cut(s) 83, 102, 184, 211, 547
SfaNI GCATC 2 cut(s) 39, 483
SmiMI CAYNNNNRTG 2 cut(s) 201, 285
SpeI ACTAGT 1 cut(s) 418
Sse9I AATT 6 cut(s) 89, 123, 169, 233, 318, 453
SsiI CCGC 3 cut(s) 413, 471, 558
SspMI CTAG 1 cut(s) 419
StyD4I CCNGG 1 cut(s) 282
StyI CCWWGG 1 cut(s) 513
TaaI ACNGT 3 cut(s) 227, 304, 468
TaqI TCGA 1 cut(s) 158
TasI AATT 6 cut(s) 89, 123, 169, 233, 318, 453
TatI WGTACW 2 cut(s) 347, 375
Tru1I TTAA 2 cut(s) 83, 270
Tru9I TTAA 2 cut(s) 83, 270
TscAI CASTG 1 cut(s) 385
TseFI GTSAC 1 cut(s) 487
Tsp45I GTSAC 1 cut(s) 487
TspDTI ATGAA 4 cut(s) 61, 102, 155, 226
TspRI CASTG 1 cut(s) 385
XapI RAATTY 3 cut(s) 89, 123, 453
XceI RCATGY 2 cut(s) 189, 390
XcmI CCANNNNNNNNNTGG 1 cut(s) 290
XmnI GAANNNNTTC 1 cut(s) 68
XspI CTAG 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.