Prupe.5G059100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
N/A
Physical Location & Seq
Forward (+)
6374219 .. 6375864
1646 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G059100.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 558 bp
ATGGCTCTCACACGTGCCATGCTCACCCTCGCTATGTTACTAGCTCTTGTAGCATTGTCCATGGCTCAAGGCCCAGCCTCGGCACCAAAATATTTCAACCCCTCCAAGCCAAAGCCGCCGCCAACCGCCGCCTCACCCACGACCCCCATCGCCTCTCCCCCCACATATATGGCGGCACCACCTCCATCAACCACCGCATCGCCGCCACCTAGTACCGTTGGAGCTACTCCTCCCACCACCTCAGCCACCTCACCAACCACCGCAACGCCCCCGTCCATGGTGGCTACACCACCAACCGCAACGCCCCCGTCCATGGTGGCTACACCACCAACTGCTGCCGCCCCACCTATGGAAGCAAGCGGCCCAACAAGCCCAGGCCCAACAAGTTCTGGCCCATCTAACACACCACCTGCACCAGCTCCAGGATCCTCCAGTACGCCCTCCATTGCACAGCCACCAGCCCCAGTCCCATCCAGTCCAGACTCAGGTGCTTTTGTTCATGGGATTAGCATGGCCTTGGTGGCATTCTTGAGTGGAGTTGCGCTAGTCCTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

17.77

Weight (kDa)

9.4

Isoelectric Point (pI)

67.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 418
Acc36I ACCTGC 1 cut(s) 418
AccB1I GGYRCC 2 cut(s) 82, 175
AclWI GGATC 2 cut(s) 420, 433
AcvI CACGTG 1 cut(s) 14
AfaI GTAC 2 cut(s) 214, 436
AfiI CCNNNNNNNGG 6 cut(s) 79, 277, 313, 349, 422, 485
AflIII ACRYGT 1 cut(s) 11
AgsI TTSAA 1 cut(s) 97
AjnI CCWGG 2 cut(s) 373, 421
AluBI AGCT 3 cut(s) 44, 224, 419
AluI AGCT 3 cut(s) 44, 224, 419
AlwI GGATC 2 cut(s) 420, 433
AoxI GGCC 5 cut(s) 70, 361, 376, 391, 513
ApeKI GCWGC 1 cut(s) 335
AspLEI GCGC 1 cut(s) 544
AspS9I GGNCC 4 cut(s) 71, 362, 377, 392
AsuHPI GGTGA 3 cut(s) 16, 126, 243
BamHI GGATCC 1 cut(s) 425
BanI GGYRCC 2 cut(s) 82, 175
BbrPI CACGTG 1 cut(s) 14
BbvCI CCTCAGC 1 cut(s) 241
BbvI GCAGC 1 cut(s) 322
BccI CCATC 4 cut(s) 155, 193, 403, 478
BciT130I CCWGG 2 cut(s) 375, 423
BfaI CTAG 3 cut(s) 41, 210, 545
BfuAI ACCTGC 1 cut(s) 418
BglI GCCNNNNNGGC 1 cut(s) 521
BisI GCNGC 8 cut(s) 116, 119, 129, 174, 203, 336, 339, 361
BlsI GCNGC 8 cut(s) 117, 120, 130, 175, 204, 337, 340, 362
Bme1390I CCNGG 2 cut(s) 375, 423
BmgT120I GGNCC 4 cut(s) 71, 362, 377, 392
BmiI GGNNCC 3 cut(s) 84, 177, 427
BmrFI CCNGG 2 cut(s) 375, 423
BmrI ACTGGG 1 cut(s) 458
BmsI GCATC 1 cut(s) 206
BmuI ACTGGG 1 cut(s) 458
BpmI CTGGAG 2 cut(s) 405, 415
Bpu10I CCTNAGC 1 cut(s) 241
BpuEI CTTGAG 2 cut(s) 51, 550
BsaAI YACGTR 1 cut(s) 14
BsaJI CCNNGG 6 cut(s) 60, 78, 276, 312, 373, 516
Bsc4I CCNNNNNNNGG 6 cut(s) 79, 277, 313, 349, 422, 485
Bse1I ACTGG 3 cut(s) 432, 464, 474
Bse3DI GCAATG 1 cut(s) 444
BseBI CCWGG 2 cut(s) 375, 423
BseDI CCNNGG 6 cut(s) 60, 78, 276, 312, 373, 516
BseGI GGATG 1 cut(s) 470
BseLI CCNNNNNNNGG 6 cut(s) 79, 277, 313, 349, 422, 485
BseMI GCAATG 1 cut(s) 444
BseMII CTCAG 2 cut(s) 255, 498
BseNI ACTGG 3 cut(s) 432, 464, 474
BseRI GAGGAG 1 cut(s) 219
BseXI GCAGC 1 cut(s) 322
BseYI CCCAGC 1 cut(s) 73
BsgI GTGCAG 1 cut(s) 396
BshFI GGCC 5 cut(s) 72, 363, 378, 393, 515
BshNI GGYRCC 2 cut(s) 82, 175
BslFI GGGAC 1 cut(s) 452
BslI CCNNNNNNNGG 6 cut(s) 79, 277, 313, 349, 422, 485
BsmFI GGGAC 1 cut(s) 452
BsmI GAATGC 1 cut(s) 524
BsnI GGCC 5 cut(s) 72, 363, 378, 393, 515
Bsp143I GATC 1 cut(s) 425
Bsp19I CCATGG 3 cut(s) 60, 276, 312
BspANI GGCC 5 cut(s) 72, 363, 378, 393, 515
BspCNI CTCAG 2 cut(s) 254, 497
BspLI GGNNCC 3 cut(s) 84, 177, 427
BspMI ACCTGC 1 cut(s) 418
BspPI GGATC 2 cut(s) 420, 433
BspT107I GGYRCC 2 cut(s) 82, 175
BsrDI GCAATG 1 cut(s) 444
BsrI ACTGG 3 cut(s) 432, 464, 474
BssECI CCNNGG 6 cut(s) 60, 78, 276, 312, 373, 516
BssMI GATC 1 cut(s) 425
BssT1I CCWWGG 4 cut(s) 60, 276, 312, 516
Bst2UI CCWGG 2 cut(s) 375, 423
Bst4CI ACNGT 1 cut(s) 217
BstBAI YACGTR 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 358
BstDEI CTNAG 3 cut(s) 241, 484, 555
BstDSI CCRYGG 3 cut(s) 60, 276, 312
BstF5I GGATG 1 cut(s) 470
BstHHI GCGC 1 cut(s) 544
BstKTI GATC 1 cut(s) 428
BstMBI GATC 1 cut(s) 425
BstMWI GCNNNNNNNGC 4 cut(s) 50, 115, 369, 521
BstNI CCWGG 2 cut(s) 375, 423
BstSCI CCNGG 2 cut(s) 373, 421
BstV1I GCAGC 1 cut(s) 322
BstX2I RGATCY 1 cut(s) 425
BstXI CCANNNNNNTGG 1 cut(s) 169
BstYI RGATCY 1 cut(s) 425
BsuRI GGCC 5 cut(s) 72, 363, 378, 393, 515
BtgI CCRYGG 3 cut(s) 60, 276, 312
BtgZI GCGATG 2 cut(s) 133, 183
BtsCI GGATG 1 cut(s) 470
BveI ACCTGC 1 cut(s) 418
Cac8I GCNNGC 1 cut(s) 358
CfoI GCGC 1 cut(s) 544
Cfr13I GGNCC 4 cut(s) 71, 362, 377, 392
Csp6I GTAC 2 cut(s) 213, 435
CviAII CATG 6 cut(s) 19, 61, 277, 313, 500, 511
CviQI GTAC 2 cut(s) 213, 435
DdeI CTNAG 3 cut(s) 241, 484, 555
DpnI GATC 1 cut(s) 427
DpnII GATC 1 cut(s) 425
Eco130I CCWWGG 4 cut(s) 60, 276, 312, 516
Eco72I CACGTG 1 cut(s) 14
EcoRII CCWGG 2 cut(s) 373, 421
EcoT14I CCWWGG 4 cut(s) 60, 276, 312, 516
ErhI CCWWGG 4 cut(s) 60, 276, 312, 516
FaeI CATG 6 cut(s) 22, 64, 280, 316, 503, 514
FaqI GGGAC 1 cut(s) 452
FatI CATG 6 cut(s) 18, 60, 276, 312, 499, 510
Fnu4HI GCNGC 8 cut(s) 116, 119, 129, 174, 203, 336, 339, 361
FokI GGATG 1 cut(s) 457
Fsp4HI GCNGC 8 cut(s) 116, 119, 129, 174, 203, 336, 339, 361
FspBI CTAG 3 cut(s) 41, 210, 545
GlaI GCGC 1 cut(s) 543
GluI GCNGC 8 cut(s) 116, 119, 129, 174, 203, 336, 339, 361
GsaI CCCAGC 1 cut(s) 77
GsuI CTGGAG 2 cut(s) 405, 415
HaeIII GGCC 5 cut(s) 72, 363, 378, 393, 515
HhaI GCGC 1 cut(s) 544
Hin1II CATG 6 cut(s) 22, 64, 280, 316, 503, 514
Hin6I GCGC 1 cut(s) 542
HinP1I GCGC 1 cut(s) 542
HinfI GANTC 1 cut(s) 482
HphI GGTGA 3 cut(s) 16, 126, 243
Hpy188III TCNNGA 2 cut(s) 479, 529
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4IV ACGT 1 cut(s) 13
HpyCH4V TGCA 2 cut(s) 413, 449
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 115, 369, 521
HpyF3I CTNAG 3 cut(s) 241, 484, 555
HpySE526I ACGT 1 cut(s) 13
Hsp92II CATG 6 cut(s) 22, 64, 280, 316, 503, 514
HspAI GCGC 1 cut(s) 542
Kzo9I GATC 1 cut(s) 425
LmnI GCTCC 2 cut(s) 221, 424
Lsp1109I GCAGC 1 cut(s) 322
LweI GCATC 1 cut(s) 206
MaeI CTAG 3 cut(s) 41, 210, 545
MaeII ACGT 1 cut(s) 13
MaeIII GTNAC 1 cut(s) 36
MalI GATC 1 cut(s) 427
MboI GATC 1 cut(s) 425
MflI RGATCY 1 cut(s) 425
MlyI GAGTC 1 cut(s) 476
MmeI TCCRAC 1 cut(s) 199
MslI CAYNNNNRTG 1 cut(s) 167
MspR9I CCNGG 2 cut(s) 375, 423
Mva1269I GAATGC 1 cut(s) 524
MvaI CCWGG 2 cut(s) 375, 423
MwoI GCNNNNNNNGC 4 cut(s) 50, 115, 369, 521
NcoI CCATGG 3 cut(s) 60, 276, 312
NdeII GATC 1 cut(s) 425
NlaIII CATG 6 cut(s) 22, 64, 280, 316, 503, 514
NlaIV GGNNCC 3 cut(s) 84, 177, 427
NmeAIII GCCGAG 1 cut(s) 59
PaqCI CACCTGC 1 cut(s) 418
PctI GAATGC 1 cut(s) 524
PfoI TCCNGGA 1 cut(s) 421
PkrI GCNGC 8 cut(s) 117, 120, 130, 175, 204, 337, 340, 362
PleI GAGTC 1 cut(s) 476
PmaCI CACGTG 1 cut(s) 14
PmlI CACGTG 1 cut(s) 14
PpsI GAGTC 1 cut(s) 476
Ppu21I YACGTR 1 cut(s) 14
Psp6I CCWGG 2 cut(s) 373, 421
PspCI CACGTG 1 cut(s) 14
PspFI CCCAGC 1 cut(s) 73
PspGI CCWGG 2 cut(s) 373, 421
PspN4I GGNNCC 3 cut(s) 84, 177, 427
PspPI GGNCC 4 cut(s) 71, 362, 377, 392
PsuI RGATCY 1 cut(s) 425
RsaI GTAC 2 cut(s) 214, 436
RsaNI GTAC 2 cut(s) 213, 435
RseI CAYNNNNRTG 1 cut(s) 167
SatI GCNGC 8 cut(s) 116, 119, 129, 174, 203, 336, 339, 361
Sau3AI GATC 1 cut(s) 425
Sau96I GGNCC 4 cut(s) 71, 362, 377, 392
SchI GAGTC 1 cut(s) 476
ScrFI CCNGG 2 cut(s) 375, 423
SfaNI GCATC 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 167
SmlI CTYRAG 2 cut(s) 66, 529
SmoI CTYRAG 2 cut(s) 66, 529
SspI AATATT 1 cut(s) 92
SspMI CTAG 3 cut(s) 41, 210, 545
StyD4I CCNGG 2 cut(s) 373, 421
StyI CCWWGG 4 cut(s) 60, 276, 312, 516
TaaI ACNGT 1 cut(s) 217
TaiI ACGT 1 cut(s) 16
TauI GCSGC 7 cut(s) 118, 121, 131, 176, 205, 341, 363
TseI GCWGC 1 cut(s) 335
TspDTI ATGAA 1 cut(s) 488
XspI CTAG 3 cut(s) 41, 210, 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.