Prupe.5G059900_v2.0.a1

TPL-binding domain in jasmonate signalling

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
6462290 .. 6466194
3905 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G059900.1_v2.0.a1.CDS.4

Sequence Viewer

Length: 1575 bp
ATGGCTTACGAGTTCAGAGATAGAAAGAACAAGCTGCAGGTATATCAAAGTAACTGGAGCAGTTCAGTGTTTTCGAGTGACGAAACAGATAGTTCTGATCCTGAGTATACAAGGAGGCCACCAAGAAGGCAAGCAAAGAACTACAACCTCAGTATTGCTCAAGTGGCTGAAGCGGGGCCAGCTACAACCTCAGCTGGGAATTTGGAATTGGTAAGGCCAAAACGGGGTCGTCCTCGAAAGAATACCAAGCCTAGGAGGCAAACAAGAGCTCGATTTTCATATAGCAACCCTGCTGGATCGTCAAACCAGACAAAGAATCTCGAAGATAGCAGAACTATATTGTCATGGTTGATTGACCTCCATATAGTTGAGGATAACGCAGCAGTCTTTTATAACAATGAGATAATGCTGAAGGGAACAATAAAAAGGGCTGGAATTTTGTGCACTTGCTGTGAACAAGTGTTTACAGTGTGGAATTTCGAGGTTCATGCTAAAAGCGAATTAAGAAGGCCGTACGAATATATTTTGGTCGAGAGCAATGGAAACTCCCTCCTCCAATGCCTGATGGATGCATGGGAGAGCCACATTGAATCTGCACCACAATTTGGATTCCATCGTAGCAGGCCCCGAACAGCAGCAGCAGACCAGAACGACGATTCGTGTATGATATGCGCAGATGGAGGGGATTTGATGTGCTGTGACAAATGTCCTTCCGCGTTCCACCCTTCATGCATGAACATGGAGAGAGTTCCCGAAGGAGAATGGGGATGTTCCTACTGTGTCTGCATACATTGTGGACTTGTTCGTGGGAAGTTCCTTACATGTTCAATTTTTGAGAAATTGGAGCAGATGGTTGGGGCCAAGAATGATTTAGACAACGGATATTCTTGGAGGCTTCTCAAGAGAGAAGATATAAACTTAAGAGGCCATACTGAAAATTTGCACAAAAAATTAGAATGCAATTCCAAGATCGCAGTGGCAGGGGTCTTGATGCACCACTGCTTTGAGACCATCATCGACAGATTCACTGGAACAAATGTTGTTCAGAGTGTAATACACAGTCAGGGGTCAAATTTGGGTCGGTTAAATTTTAGAAATTTCTATACTGCCATCCTAGAGAAGGACGATGAAATCATCTCTGCAGCATCTATAAGAATACGTGGAAGAGAGATGGCAGAGATGCCCTTTGTGGGAACTGAATCGAAGTGCAGGGGACAAGGATTTCTTCGAAAATTTCTAGTAGCCATTGAATCTGCCCTTCACTTCTTAAATGTGGAAAATCTGATCATTCCAGCTTCAATAGAAATAGTTGGAATGTGGACTCAAAAATTTAAATTTTCCCACATTGCAAGTGCCATGATCAGAACAATAATCTCCTCAAACACATTGATGTTTCCGAAGGCTGTCAGGCTGCAGAAAAGCTTGCTGGCAGATGATGCAGAAGCAGACAATGCAGCTATGGACGTTAATGAAGTTCAGAACAATGATCAAAATGAGGTCCAGCAAAATAGAGATGAAAGACCGCCTTTCATTGATATAAATCTGGACCCTACAGAAGAGGCTATTGATGCATAA

Protein Analysis

525

Amino Acids

59.35

Weight (kDa)

6.38

Isoelectric Point (pI)

47.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028296)

Species Orthologous Gene IDs
malus_domestica MD06G1050800.v1.1
prunus_persica Prupe.5G059900_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 393
Acc16I TGCGCA 1 cut(s) 673
Acc36I ACCTGC 1 cut(s) 28
AccB7I CCANNNNNTGG 1 cut(s) 605
AccI GTMKAC 1 cut(s) 107
AccII CGCG 1 cut(s) 716
AciI CCGC 3 cut(s) 173, 714, 1523
AclWI GGATC 2 cut(s) 92, 304
AcuI CTGAAG 2 cut(s) 189, 431
AfaI GTAC 1 cut(s) 515
AfiI CCNNNNNNNGG 6 cut(s) 195, 224, 252, 605, 1120, 1190
AflII CTTAAG 1 cut(s) 919
AflIII ACRYGT 1 cut(s) 821
AgsI TTSAA 4 cut(s) 590, 828, 1250, 1299
AjuI GAANNNNNNNTTGG 2 cut(s) 191, 223
AluBI AGCT 7 cut(s) 34, 182, 194, 269, 1295, 1422, 1457
AluI AGCT 7 cut(s) 34, 182, 194, 269, 1295, 1422, 1457
Alw21I GWGCWC 2 cut(s) 271, 446
Alw26I GTCTC 1 cut(s) 1001
Alw44I GTGCAC 1 cut(s) 442
AlwI GGATC 2 cut(s) 92, 304
AoxI GGCC 7 cut(s) 116, 176, 215, 509, 623, 858, 925
ApaLI GTGCAC 1 cut(s) 442
ApeKI GCWGC 7 cut(s) 34, 380, 635, 638, 1142, 1411, 1454
AspA2I CCTAGG 1 cut(s) 251
AspLEI GCGC 1 cut(s) 674
AspS9I GGNCC 5 cut(s) 176, 624, 858, 1498, 1546
AsuII TTCGAA 1 cut(s) 1228
AvaII GGWCC 2 cut(s) 1498, 1546
AvrII CCTAGG 1 cut(s) 251
BaeGI GKGCMC 1 cut(s) 446
BanII GRGCYC 1 cut(s) 271
Bbv12I GWGCWC 2 cut(s) 271, 446
BbvCI CCTCAGC 1 cut(s) 190
BbvI GCAGC 7 cut(s) 21, 392, 647, 650, 1154, 1398, 1466
BccI CCATC 7 cut(s) 559, 621, 671, 844, 1019, 1118, 1165
BceAI ACGGC 1 cut(s) 496
BcgI CGANNNNNNTGC 2 cut(s) 470, 504
BclI TGATCA 3 cut(s) 1284, 1359, 1486
BcoDI GTCTC 1 cut(s) 1001
BfaI CTAG 3 cut(s) 252, 1115, 1238
BfmI CTRYAG 4 cut(s) 35, 1140, 1412, 1551
BfrI CTTAAG 1 cut(s) 919
BfuAI ACCTGC 1 cut(s) 28
BglI GCCNNNNNGGC 1 cut(s) 256
BisI GCNGC 7 cut(s) 35, 381, 636, 639, 1143, 1412, 1455
BlnI CCTAGG 1 cut(s) 251
BlsI GCNGC 7 cut(s) 36, 382, 637, 640, 1144, 1413, 1456
Bme18I GGWCC 2 cut(s) 1498, 1546
BmgT120I GGNCC 5 cut(s) 176, 624, 858, 1498, 1546
BmiI GGNNCC 4 cut(s) 177, 626, 859, 1548
BmsI GCATC 6 cut(s) 559, 981, 1154, 1170, 1426, 1558
BoxI GACNNNNGTC 1 cut(s) 705
BpmI CTGGAG 1 cut(s) 76
Bpu10I CCTNAGC 1 cut(s) 190
Bpu14I TTCGAA 1 cut(s) 1228
BpuEI CTTGAG 2 cut(s) 144, 884
BsaAI YACGTR 1 cut(s) 1160
BsaBI GATNNNNATC 1 cut(s) 1539
BsaI GGTCTC 1 cut(s) 1001
BsaJI CCNNGG 1 cut(s) 251
Bsc4I CCNNNNNNNGG 6 cut(s) 195, 224, 252, 605, 1120, 1190
Bse1I ACTGG 2 cut(s) 59, 1033
Bse3DI GCAATG 2 cut(s) 544, 1344
Bse8I GATNNNNATC 1 cut(s) 1539
BseDI CCNNGG 1 cut(s) 251
BseGI GGATG 3 cut(s) 574, 773, 1110
BseJI GATNNNNATC 1 cut(s) 1539
BseLI CCNNNNNNNGG 6 cut(s) 195, 224, 252, 605, 1120, 1190
BseMI GCAATG 2 cut(s) 544, 1344
BseMII CTCAG 3 cut(s) 93, 163, 204
BseNI ACTGG 2 cut(s) 59, 1033
BseRI GAGGAG 2 cut(s) 542, 1366
BseSI GKGCMC 1 cut(s) 446
BseXI GCAGC 7 cut(s) 21, 392, 647, 650, 1154, 1398, 1466
BseYI CCCAGC 1 cut(s) 194
BsgI GTGCAG 2 cut(s) 579, 1228
Bsh1236I CGCG 1 cut(s) 716
BshFI GGCC 7 cut(s) 118, 178, 217, 511, 625, 860, 927
BsiHKAI GWGCWC 2 cut(s) 271, 446
BsiWI CGTACG 1 cut(s) 513
BslFI GGGAC 1 cut(s) 1227
BslI CCNNNNNNNGG 6 cut(s) 195, 224, 252, 605, 1120, 1190
BsmAI GTCTC 1 cut(s) 1001
BsmFI GGGAC 1 cut(s) 1227
BsmI GAATGC 1 cut(s) 962
BsnI GGCC 7 cut(s) 118, 178, 217, 511, 625, 860, 927
Bso31I GGTCTC 1 cut(s) 1001
Bsp119I TTCGAA 1 cut(s) 1228
Bsp1286I GDGCHC 2 cut(s) 271, 446
Bsp143I GATC 6 cut(s) 97, 296, 969, 1284, 1359, 1486
BspACI CCGC 3 cut(s) 173, 714, 1523
BspANI GGCC 7 cut(s) 118, 178, 217, 511, 625, 860, 927
BspCNI CTCAG 3 cut(s) 94, 162, 203
BspFNI CGCG 1 cut(s) 716
BspLI GGNNCC 4 cut(s) 177, 626, 859, 1548
BspMAI CTGCAG 3 cut(s) 39, 1144, 1416
BspMI ACCTGC 1 cut(s) 28
BspPI GGATC 2 cut(s) 92, 304
BspT104I TTCGAA 1 cut(s) 1228
BspTI CTTAAG 1 cut(s) 919
BspTNI GGTCTC 1 cut(s) 1001
BsrDI GCAATG 2 cut(s) 544, 1344
BsrI ACTGG 2 cut(s) 59, 1033
BssECI CCNNGG 1 cut(s) 251
BssMI GATC 6 cut(s) 97, 296, 969, 1284, 1359, 1486
BssNAI GTATAC 1 cut(s) 108
BssT1I CCWWGG 1 cut(s) 251
Bst1107I GTATAC 1 cut(s) 108
Bst4CI ACNGT 3 cut(s) 469, 779, 1061
Bst6I CTCTTC 2 cut(s) 1159, 1551
BstAFI CTTAAG 1 cut(s) 919
BstAPI GCANNNNNTGC 2 cut(s) 1436, 1451
BstBAI YACGTR 1 cut(s) 1160
BstBI TTCGAA 1 cut(s) 1228
BstC8I GCNNGC 5 cut(s) 132, 180, 623, 1424, 1428
BstDEI CTNAG 3 cut(s) 102, 149, 190
BstENI CCTNNNNNAGG 1 cut(s) 1118
BstF5I GGATG 3 cut(s) 574, 773, 1110
BstFNI CGCG 1 cut(s) 716
BstHHI GCGC 1 cut(s) 674
BstKTI GATC 6 cut(s) 100, 299, 972, 1287, 1362, 1489
BstMAI GTCTC 1 cut(s) 1001
BstMBI GATC 6 cut(s) 97, 296, 969, 1284, 1359, 1486
BstMWI GCNNNNNNNGC 6 cut(s) 164, 179, 256, 1436, 1451, 1568
BstNSI RCATGY 1 cut(s) 825
BstPAI GACNNNNGTC 1 cut(s) 705
BstSFI CTRYAG 4 cut(s) 35, 1140, 1412, 1551
BstSLI GKGCMC 1 cut(s) 446
BstUI CGCG 1 cut(s) 716
BstV1I GCAGC 7 cut(s) 21, 392, 647, 650, 1154, 1398, 1466
BstZ17I GTATAC 1 cut(s) 108
BsuRI GGCC 7 cut(s) 118, 178, 217, 511, 625, 860, 927
BtsCI GGATG 3 cut(s) 574, 773, 1110
BtsI GCAGTG 2 cut(s) 981, 997
BtsIMutI CAGTG 5 cut(s) 72, 474, 981, 997, 1026
BveI ACCTGC 1 cut(s) 28
Cac8I GCNNGC 5 cut(s) 132, 180, 623, 1424, 1428
CfoI GCGC 1 cut(s) 674
Cfr13I GGNCC 5 cut(s) 176, 624, 858, 1498, 1546
Csp6I GTAC 1 cut(s) 514
CviAII CATG 8 cut(s) 345, 488, 573, 729, 733, 739, 822, 1357
CviQI GTAC 1 cut(s) 514
DdeI CTNAG 3 cut(s) 102, 149, 190
DpnI GATC 6 cut(s) 99, 298, 971, 1286, 1361, 1488
DpnII GATC 6 cut(s) 97, 296, 969, 1284, 1359, 1486
DraI TTTAAA 1 cut(s) 1333
Eam1104I CTCTTC 2 cut(s) 1159, 1551
EarI CTCTTC 2 cut(s) 1159, 1551
Ecl136II GAGCTC 1 cut(s) 269
Eco130I CCWWGG 1 cut(s) 251
Eco24I GRGCYC 1 cut(s) 271
Eco31I GGTCTC 1 cut(s) 1001
Eco47I GGWCC 2 cut(s) 1498, 1546
Eco53kI GAGCTC 1 cut(s) 269
Eco57I CTGAAG 2 cut(s) 189, 431
EcoICRI GAGCTC 1 cut(s) 269
EcoNI CCTNNNNNAGG 1 cut(s) 1118
EcoO109I RGGNCCY 1 cut(s) 624
EcoT14I CCWWGG 1 cut(s) 251
EcoT22I ATGCAT 3 cut(s) 574, 734, 1573
EcoT38I GRGCYC 1 cut(s) 271
ErhI CCWWGG 1 cut(s) 251
FaeI CATG 8 cut(s) 348, 491, 576, 732, 736, 742, 825, 1360
FalI AAGNNNNNCTT 4 cut(s) 1209, 1241, 1510, 1542
FaqI GGGAC 1 cut(s) 1227
FatI CATG 8 cut(s) 344, 487, 572, 728, 732, 738, 821, 1356
FauI CCCGC 1 cut(s) 166
FbaI TGATCA 3 cut(s) 1284, 1359, 1486
FblI GTMKAC 1 cut(s) 107
Fnu4HI GCNGC 7 cut(s) 35, 381, 636, 639, 1143, 1412, 1455
FokI GGATG 3 cut(s) 581, 780, 1097
FriOI GRGCYC 1 cut(s) 271
Fsp4HI GCNGC 7 cut(s) 35, 381, 636, 639, 1143, 1412, 1455
FspBI CTAG 3 cut(s) 252, 1115, 1238
FspI TGCGCA 1 cut(s) 673
GlaI GCGC 1 cut(s) 673
GluI GCNGC 7 cut(s) 35, 381, 636, 639, 1143, 1412, 1455
GsaI CCCAGC 1 cut(s) 198
GsuI CTGGAG 1 cut(s) 76
HaeIII GGCC 7 cut(s) 118, 178, 217, 511, 625, 860, 927
HhaI GCGC 1 cut(s) 674
Hin1II CATG 8 cut(s) 348, 491, 576, 732, 736, 742, 825, 1360
Hin6I GCGC 1 cut(s) 672
HinP1I GCGC 1 cut(s) 672
HindIII AAGCTT 1 cut(s) 1420
HinfI GANTC 8 cut(s) 316, 590, 609, 656, 1023, 1199, 1250, 1321
Hpy166II GTNNAC 6 cut(s) 108, 444, 455, 465, 797, 1320
Hpy188I TCNGA 7 cut(s) 17, 97, 1047, 1284, 1364, 1398, 1479
Hpy188III TCNNGA 7 cut(s) 101, 320, 532, 752, 901, 988, 1544
Hpy8I GTNNAC 6 cut(s) 108, 444, 455, 465, 797, 1320
Hpy99I CGWCG 1 cut(s) 656
HpyAV CCTTC 9 cut(s) 120, 406, 501, 720, 735, 749, 1114, 1268, 1393
HpyCH4III ACNGT 3 cut(s) 469, 779, 1061
HpyCH4IV ACGT 2 cut(s) 1159, 1464
HpyF10VI GCNNNNNNNGC 6 cut(s) 164, 179, 256, 1436, 1451, 1568
HpyF3I CTNAG 3 cut(s) 102, 149, 190
HpySE526I ACGT 2 cut(s) 1159, 1464
Hsp92II CATG 8 cut(s) 348, 491, 576, 732, 736, 742, 825, 1360
HspAI GCGC 1 cut(s) 672
Ksp22I TGATCA 3 cut(s) 1284, 1359, 1486
Kzo9I GATC 6 cut(s) 97, 296, 969, 1284, 1359, 1486
LmnI GCTCC 2 cut(s) 57, 844
Lsp1109I GCAGC 7 cut(s) 21, 392, 647, 650, 1154, 1398, 1466
LweI GCATC 6 cut(s) 559, 981, 1154, 1170, 1426, 1558
MaeI CTAG 3 cut(s) 252, 1115, 1238
MaeII ACGT 2 cut(s) 1159, 1464
MaeIII GTNAC 3 cut(s) 50, 77, 698
MalI GATC 6 cut(s) 99, 298, 971, 1286, 1361, 1488
MboI GATC 6 cut(s) 97, 296, 969, 1284, 1359, 1486
MboII GAAGA 5 cut(s) 335, 920, 1176, 1217, 1568
MhlI GDGCHC 2 cut(s) 271, 446
MlyI GAGTC 1 cut(s) 1315
MmeI TCCRAC 1 cut(s) 1291
Mph1103I ATGCAT 3 cut(s) 574, 734, 1573
MseI TTAA 6 cut(s) 503, 920, 1085, 1268, 1332, 1467
MslI CAYNNNNRTG 2 cut(s) 737, 1388
MspA1I CMGCKG 1 cut(s) 194
MspCI CTTAAG 1 cut(s) 919
Mva1269I GAATGC 1 cut(s) 962
MvnI CGCG 1 cut(s) 716
MwoI GCNNNNNNNGC 6 cut(s) 164, 179, 256, 1436, 1451, 1568
NdeII GATC 6 cut(s) 97, 296, 969, 1284, 1359, 1486
NlaIII CATG 8 cut(s) 348, 491, 576, 732, 736, 742, 825, 1360
NlaIV GGNNCC 4 cut(s) 177, 626, 859, 1548
NmuCI GTSAC 2 cut(s) 77, 698
NsbI TGCGCA 1 cut(s) 673
NsiI ATGCAT 3 cut(s) 574, 734, 1573
NspI RCATGY 1 cut(s) 825
NspV TTCGAA 1 cut(s) 1228
PciI ACATGT 1 cut(s) 821
PctI GAATGC 1 cut(s) 962
PfeI GAWTC 7 cut(s) 316, 590, 609, 656, 1023, 1199, 1250
Pfl23II CGTACG 1 cut(s) 513
PflMI CCANNNNNTGG 1 cut(s) 605
PkrI GCNGC 7 cut(s) 36, 382, 637, 640, 1144, 1413, 1456
PleI GAGTC 1 cut(s) 1315
PpsI GAGTC 1 cut(s) 1315
Ppu21I YACGTR 1 cut(s) 1160
PscI ACATGT 1 cut(s) 821
PshAI GACNNNNGTC 1 cut(s) 705
PsiI TTATAA 1 cut(s) 393
Psp124BI GAGCTC 1 cut(s) 271
PspFI CCCAGC 1 cut(s) 194
PspLI CGTACG 1 cut(s) 513
PspN4I GGNNCC 4 cut(s) 177, 626, 859, 1548
PspPI GGNCC 5 cut(s) 176, 624, 858, 1498, 1546
PstI CTGCAG 3 cut(s) 39, 1144, 1416
PvuII CAGCTG 1 cut(s) 194
RsaI GTAC 1 cut(s) 515
RsaNI GTAC 1 cut(s) 514
RseI CAYNNNNRTG 2 cut(s) 737, 1388
SacI GAGCTC 1 cut(s) 271
SaqAI TTAA 6 cut(s) 503, 920, 1085, 1268, 1332, 1467
SatI GCNGC 7 cut(s) 35, 381, 636, 639, 1143, 1412, 1455
Sau3AI GATC 6 cut(s) 97, 296, 969, 1284, 1359, 1486
Sau96I GGNCC 5 cut(s) 176, 624, 858, 1498, 1546
SchI GAGTC 1 cut(s) 1315
SduI GDGCHC 2 cut(s) 271, 446
SfaNI GCATC 6 cut(s) 559, 981, 1154, 1170, 1426, 1558
SfcI CTRYAG 4 cut(s) 35, 1140, 1412, 1551
SfuI TTCGAA 1 cut(s) 1228
SinI GGWCC 2 cut(s) 1498, 1546
SmiI ATTTAAAT 1 cut(s) 1333
SmiMI CAYNNNNRTG 2 cut(s) 737, 1388
SmlI CTYRAG 3 cut(s) 159, 899, 919
SmoI CTYRAG 3 cut(s) 159, 899, 919
SsiI CCGC 3 cut(s) 173, 714, 1523
SspMI CTAG 3 cut(s) 252, 1115, 1238
SstI GAGCTC 1 cut(s) 271
StyI CCWWGG 1 cut(s) 251
SwaI ATTTAAAT 1 cut(s) 1333
TaaI ACNGT 3 cut(s) 469, 779, 1061
TaiI ACGT 2 cut(s) 1162, 1467
TaqI TCGA 9 cut(s) 74, 235, 271, 321, 480, 531, 1017, 1202, 1228
TfiI GAWTC 7 cut(s) 316, 590, 609, 656, 1023, 1199, 1250
Tru1I TTAA 6 cut(s) 503, 920, 1085, 1268, 1332, 1467
Tru9I TTAA 6 cut(s) 503, 920, 1085, 1268, 1332, 1467
TscAI CASTG 5 cut(s) 72, 474, 981, 1004, 1033
TseFI GTSAC 2 cut(s) 77, 698
TseI GCWGC 7 cut(s) 34, 380, 635, 638, 1142, 1411, 1454
Tsp45I GTSAC 2 cut(s) 77, 698
TspDTI ATGAA 8 cut(s) 267, 476, 717, 749, 1143, 1485, 1519, 1530
TspGWI ACGGA 1 cut(s) 894
TspRI CASTG 5 cut(s) 72, 474, 981, 1004, 1033
Van91I CCANNNNNTGG 1 cut(s) 605
Vha464I CTTAAG 1 cut(s) 919
VneI GTGCAC 1 cut(s) 442
VpaK11BI GGWCC 2 cut(s) 1498, 1546
XagI CCTNNNNNAGG 1 cut(s) 1118
XceI RCATGY 1 cut(s) 825
XcmI CCANNNNNNNNNTGG 1 cut(s) 973
XmaJI CCTAGG 1 cut(s) 251
XmiI GTMKAC 1 cut(s) 107
XspI CTAG 3 cut(s) 252, 1115, 1238
Zsp2I ATGCAT 3 cut(s) 574, 734, 1573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.