TPL-binding domain in jasmonate signalling
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD06G1050800.v1.1 |
| prunus_persica | Prupe.5G059900_v2.0.a1 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 393 |
| Acc16I | TGCGCA | 1 cut(s) | 673 |
| Acc36I | ACCTGC | 1 cut(s) | 28 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 605 |
| AccI | GTMKAC | 1 cut(s) | 107 |
| AccII | CGCG | 1 cut(s) | 716 |
| AciI | CCGC | 3 cut(s) | 173, 714, 1523 |
| AclWI | GGATC | 2 cut(s) | 92, 304 |
| AcuI | CTGAAG | 2 cut(s) | 189, 431 |
| AfaI | GTAC | 1 cut(s) | 515 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 195, 224, 252, 605, 1120, 1190 |
| AflII | CTTAAG | 1 cut(s) | 919 |
| AflIII | ACRYGT | 1 cut(s) | 821 |
| AgsI | TTSAA | 4 cut(s) | 590, 828, 1250, 1299 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 191, 223 |
| AluBI | AGCT | 7 cut(s) | 34, 182, 194, 269, 1295, 1422, 1457 |
| AluI | AGCT | 7 cut(s) | 34, 182, 194, 269, 1295, 1422, 1457 |
| Alw21I | GWGCWC | 2 cut(s) | 271, 446 |
| Alw26I | GTCTC | 1 cut(s) | 1001 |
| Alw44I | GTGCAC | 1 cut(s) | 442 |
| AlwI | GGATC | 2 cut(s) | 92, 304 |
| AoxI | GGCC | 7 cut(s) | 116, 176, 215, 509, 623, 858, 925 |
| ApaLI | GTGCAC | 1 cut(s) | 442 |
| ApeKI | GCWGC | 7 cut(s) | 34, 380, 635, 638, 1142, 1411, 1454 |
| AspA2I | CCTAGG | 1 cut(s) | 251 |
| AspLEI | GCGC | 1 cut(s) | 674 |
| AspS9I | GGNCC | 5 cut(s) | 176, 624, 858, 1498, 1546 |
| AsuII | TTCGAA | 1 cut(s) | 1228 |
| AvaII | GGWCC | 2 cut(s) | 1498, 1546 |
| AvrII | CCTAGG | 1 cut(s) | 251 |
| BaeGI | GKGCMC | 1 cut(s) | 446 |
| BanII | GRGCYC | 1 cut(s) | 271 |
| Bbv12I | GWGCWC | 2 cut(s) | 271, 446 |
| BbvCI | CCTCAGC | 1 cut(s) | 190 |
| BbvI | GCAGC | 7 cut(s) | 21, 392, 647, 650, 1154, 1398, 1466 |
| BccI | CCATC | 7 cut(s) | 559, 621, 671, 844, 1019, 1118, 1165 |
| BceAI | ACGGC | 1 cut(s) | 496 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 470, 504 |
| BclI | TGATCA | 3 cut(s) | 1284, 1359, 1486 |
| BcoDI | GTCTC | 1 cut(s) | 1001 |
| BfaI | CTAG | 3 cut(s) | 252, 1115, 1238 |
| BfmI | CTRYAG | 4 cut(s) | 35, 1140, 1412, 1551 |
| BfrI | CTTAAG | 1 cut(s) | 919 |
| BfuAI | ACCTGC | 1 cut(s) | 28 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 256 |
| BisI | GCNGC | 7 cut(s) | 35, 381, 636, 639, 1143, 1412, 1455 |
| BlnI | CCTAGG | 1 cut(s) | 251 |
| BlsI | GCNGC | 7 cut(s) | 36, 382, 637, 640, 1144, 1413, 1456 |
| Bme18I | GGWCC | 2 cut(s) | 1498, 1546 |
| BmgT120I | GGNCC | 5 cut(s) | 176, 624, 858, 1498, 1546 |
| BmiI | GGNNCC | 4 cut(s) | 177, 626, 859, 1548 |
| BmsI | GCATC | 6 cut(s) | 559, 981, 1154, 1170, 1426, 1558 |
| BoxI | GACNNNNGTC | 1 cut(s) | 705 |
| BpmI | CTGGAG | 1 cut(s) | 76 |
| Bpu10I | CCTNAGC | 1 cut(s) | 190 |
| Bpu14I | TTCGAA | 1 cut(s) | 1228 |
| BpuEI | CTTGAG | 2 cut(s) | 144, 884 |
| BsaAI | YACGTR | 1 cut(s) | 1160 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1539 |
| BsaI | GGTCTC | 1 cut(s) | 1001 |
| BsaJI | CCNNGG | 1 cut(s) | 251 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 195, 224, 252, 605, 1120, 1190 |
| Bse1I | ACTGG | 2 cut(s) | 59, 1033 |
| Bse3DI | GCAATG | 2 cut(s) | 544, 1344 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1539 |
| BseDI | CCNNGG | 1 cut(s) | 251 |
| BseGI | GGATG | 3 cut(s) | 574, 773, 1110 |
| BseJI | GATNNNNATC | 1 cut(s) | 1539 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 195, 224, 252, 605, 1120, 1190 |
| BseMI | GCAATG | 2 cut(s) | 544, 1344 |
| BseMII | CTCAG | 3 cut(s) | 93, 163, 204 |
| BseNI | ACTGG | 2 cut(s) | 59, 1033 |
| BseRI | GAGGAG | 2 cut(s) | 542, 1366 |
| BseSI | GKGCMC | 1 cut(s) | 446 |
| BseXI | GCAGC | 7 cut(s) | 21, 392, 647, 650, 1154, 1398, 1466 |
| BseYI | CCCAGC | 1 cut(s) | 194 |
| BsgI | GTGCAG | 2 cut(s) | 579, 1228 |
| Bsh1236I | CGCG | 1 cut(s) | 716 |
| BshFI | GGCC | 7 cut(s) | 118, 178, 217, 511, 625, 860, 927 |
| BsiHKAI | GWGCWC | 2 cut(s) | 271, 446 |
| BsiWI | CGTACG | 1 cut(s) | 513 |
| BslFI | GGGAC | 1 cut(s) | 1227 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 195, 224, 252, 605, 1120, 1190 |
| BsmAI | GTCTC | 1 cut(s) | 1001 |
| BsmFI | GGGAC | 1 cut(s) | 1227 |
| BsmI | GAATGC | 1 cut(s) | 962 |
| BsnI | GGCC | 7 cut(s) | 118, 178, 217, 511, 625, 860, 927 |
| Bso31I | GGTCTC | 1 cut(s) | 1001 |
| Bsp119I | TTCGAA | 1 cut(s) | 1228 |
| Bsp1286I | GDGCHC | 2 cut(s) | 271, 446 |
| Bsp143I | GATC | 6 cut(s) | 97, 296, 969, 1284, 1359, 1486 |
| BspACI | CCGC | 3 cut(s) | 173, 714, 1523 |
| BspANI | GGCC | 7 cut(s) | 118, 178, 217, 511, 625, 860, 927 |
| BspCNI | CTCAG | 3 cut(s) | 94, 162, 203 |
| BspFNI | CGCG | 1 cut(s) | 716 |
| BspLI | GGNNCC | 4 cut(s) | 177, 626, 859, 1548 |
| BspMAI | CTGCAG | 3 cut(s) | 39, 1144, 1416 |
| BspMI | ACCTGC | 1 cut(s) | 28 |
| BspPI | GGATC | 2 cut(s) | 92, 304 |
| BspT104I | TTCGAA | 1 cut(s) | 1228 |
| BspTI | CTTAAG | 1 cut(s) | 919 |
| BspTNI | GGTCTC | 1 cut(s) | 1001 |
| BsrDI | GCAATG | 2 cut(s) | 544, 1344 |
| BsrI | ACTGG | 2 cut(s) | 59, 1033 |
| BssECI | CCNNGG | 1 cut(s) | 251 |
| BssMI | GATC | 6 cut(s) | 97, 296, 969, 1284, 1359, 1486 |
| BssNAI | GTATAC | 1 cut(s) | 108 |
| BssT1I | CCWWGG | 1 cut(s) | 251 |
| Bst1107I | GTATAC | 1 cut(s) | 108 |
| Bst4CI | ACNGT | 3 cut(s) | 469, 779, 1061 |
| Bst6I | CTCTTC | 2 cut(s) | 1159, 1551 |
| BstAFI | CTTAAG | 1 cut(s) | 919 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1436, 1451 |
| BstBAI | YACGTR | 1 cut(s) | 1160 |
| BstBI | TTCGAA | 1 cut(s) | 1228 |
| BstC8I | GCNNGC | 5 cut(s) | 132, 180, 623, 1424, 1428 |
| BstDEI | CTNAG | 3 cut(s) | 102, 149, 190 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1118 |
| BstF5I | GGATG | 3 cut(s) | 574, 773, 1110 |
| BstFNI | CGCG | 1 cut(s) | 716 |
| BstHHI | GCGC | 1 cut(s) | 674 |
| BstKTI | GATC | 6 cut(s) | 100, 299, 972, 1287, 1362, 1489 |
| BstMAI | GTCTC | 1 cut(s) | 1001 |
| BstMBI | GATC | 6 cut(s) | 97, 296, 969, 1284, 1359, 1486 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 164, 179, 256, 1436, 1451, 1568 |
| BstNSI | RCATGY | 1 cut(s) | 825 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 705 |
| BstSFI | CTRYAG | 4 cut(s) | 35, 1140, 1412, 1551 |
| BstSLI | GKGCMC | 1 cut(s) | 446 |
| BstUI | CGCG | 1 cut(s) | 716 |
| BstV1I | GCAGC | 7 cut(s) | 21, 392, 647, 650, 1154, 1398, 1466 |
| BstZ17I | GTATAC | 1 cut(s) | 108 |
| BsuRI | GGCC | 7 cut(s) | 118, 178, 217, 511, 625, 860, 927 |
| BtsCI | GGATG | 3 cut(s) | 574, 773, 1110 |
| BtsI | GCAGTG | 2 cut(s) | 981, 997 |
| BtsIMutI | CAGTG | 5 cut(s) | 72, 474, 981, 997, 1026 |
| BveI | ACCTGC | 1 cut(s) | 28 |
| Cac8I | GCNNGC | 5 cut(s) | 132, 180, 623, 1424, 1428 |
| CfoI | GCGC | 1 cut(s) | 674 |
| Cfr13I | GGNCC | 5 cut(s) | 176, 624, 858, 1498, 1546 |
| Csp6I | GTAC | 1 cut(s) | 514 |
| CviAII | CATG | 8 cut(s) | 345, 488, 573, 729, 733, 739, 822, 1357 |
| CviQI | GTAC | 1 cut(s) | 514 |
| DdeI | CTNAG | 3 cut(s) | 102, 149, 190 |
| DpnI | GATC | 6 cut(s) | 99, 298, 971, 1286, 1361, 1488 |
| DpnII | GATC | 6 cut(s) | 97, 296, 969, 1284, 1359, 1486 |
| DraI | TTTAAA | 1 cut(s) | 1333 |
| Eam1104I | CTCTTC | 2 cut(s) | 1159, 1551 |
| EarI | CTCTTC | 2 cut(s) | 1159, 1551 |
| Ecl136II | GAGCTC | 1 cut(s) | 269 |
| Eco130I | CCWWGG | 1 cut(s) | 251 |
| Eco24I | GRGCYC | 1 cut(s) | 271 |
| Eco31I | GGTCTC | 1 cut(s) | 1001 |
| Eco47I | GGWCC | 2 cut(s) | 1498, 1546 |
| Eco53kI | GAGCTC | 1 cut(s) | 269 |
| Eco57I | CTGAAG | 2 cut(s) | 189, 431 |
| EcoICRI | GAGCTC | 1 cut(s) | 269 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1118 |
| EcoO109I | RGGNCCY | 1 cut(s) | 624 |
| EcoT14I | CCWWGG | 1 cut(s) | 251 |
| EcoT22I | ATGCAT | 3 cut(s) | 574, 734, 1573 |
| EcoT38I | GRGCYC | 1 cut(s) | 271 |
| ErhI | CCWWGG | 1 cut(s) | 251 |
| FaeI | CATG | 8 cut(s) | 348, 491, 576, 732, 736, 742, 825, 1360 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1209, 1241, 1510, 1542 |
| FaqI | GGGAC | 1 cut(s) | 1227 |
| FatI | CATG | 8 cut(s) | 344, 487, 572, 728, 732, 738, 821, 1356 |
| FauI | CCCGC | 1 cut(s) | 166 |
| FbaI | TGATCA | 3 cut(s) | 1284, 1359, 1486 |
| FblI | GTMKAC | 1 cut(s) | 107 |
| Fnu4HI | GCNGC | 7 cut(s) | 35, 381, 636, 639, 1143, 1412, 1455 |
| FokI | GGATG | 3 cut(s) | 581, 780, 1097 |
| FriOI | GRGCYC | 1 cut(s) | 271 |
| Fsp4HI | GCNGC | 7 cut(s) | 35, 381, 636, 639, 1143, 1412, 1455 |
| FspBI | CTAG | 3 cut(s) | 252, 1115, 1238 |
| FspI | TGCGCA | 1 cut(s) | 673 |
| GlaI | GCGC | 1 cut(s) | 673 |
| GluI | GCNGC | 7 cut(s) | 35, 381, 636, 639, 1143, 1412, 1455 |
| GsaI | CCCAGC | 1 cut(s) | 198 |
| GsuI | CTGGAG | 1 cut(s) | 76 |
| HaeIII | GGCC | 7 cut(s) | 118, 178, 217, 511, 625, 860, 927 |
| HhaI | GCGC | 1 cut(s) | 674 |
| Hin1II | CATG | 8 cut(s) | 348, 491, 576, 732, 736, 742, 825, 1360 |
| Hin6I | GCGC | 1 cut(s) | 672 |
| HinP1I | GCGC | 1 cut(s) | 672 |
| HindIII | AAGCTT | 1 cut(s) | 1420 |
| HinfI | GANTC | 8 cut(s) | 316, 590, 609, 656, 1023, 1199, 1250, 1321 |
| Hpy166II | GTNNAC | 6 cut(s) | 108, 444, 455, 465, 797, 1320 |
| Hpy188I | TCNGA | 7 cut(s) | 17, 97, 1047, 1284, 1364, 1398, 1479 |
| Hpy188III | TCNNGA | 7 cut(s) | 101, 320, 532, 752, 901, 988, 1544 |
| Hpy8I | GTNNAC | 6 cut(s) | 108, 444, 455, 465, 797, 1320 |
| Hpy99I | CGWCG | 1 cut(s) | 656 |
| HpyAV | CCTTC | 9 cut(s) | 120, 406, 501, 720, 735, 749, 1114, 1268, 1393 |
| HpyCH4III | ACNGT | 3 cut(s) | 469, 779, 1061 |
| HpyCH4IV | ACGT | 2 cut(s) | 1159, 1464 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 164, 179, 256, 1436, 1451, 1568 |
| HpyF3I | CTNAG | 3 cut(s) | 102, 149, 190 |
| HpySE526I | ACGT | 2 cut(s) | 1159, 1464 |
| Hsp92II | CATG | 8 cut(s) | 348, 491, 576, 732, 736, 742, 825, 1360 |
| HspAI | GCGC | 1 cut(s) | 672 |
| Ksp22I | TGATCA | 3 cut(s) | 1284, 1359, 1486 |
| Kzo9I | GATC | 6 cut(s) | 97, 296, 969, 1284, 1359, 1486 |
| LmnI | GCTCC | 2 cut(s) | 57, 844 |
| Lsp1109I | GCAGC | 7 cut(s) | 21, 392, 647, 650, 1154, 1398, 1466 |
| LweI | GCATC | 6 cut(s) | 559, 981, 1154, 1170, 1426, 1558 |
| MaeI | CTAG | 3 cut(s) | 252, 1115, 1238 |
| MaeII | ACGT | 2 cut(s) | 1159, 1464 |
| MaeIII | GTNAC | 3 cut(s) | 50, 77, 698 |
| MalI | GATC | 6 cut(s) | 99, 298, 971, 1286, 1361, 1488 |
| MboI | GATC | 6 cut(s) | 97, 296, 969, 1284, 1359, 1486 |
| MboII | GAAGA | 5 cut(s) | 335, 920, 1176, 1217, 1568 |
| MhlI | GDGCHC | 2 cut(s) | 271, 446 |
| MlyI | GAGTC | 1 cut(s) | 1315 |
| MmeI | TCCRAC | 1 cut(s) | 1291 |
| Mph1103I | ATGCAT | 3 cut(s) | 574, 734, 1573 |
| MseI | TTAA | 6 cut(s) | 503, 920, 1085, 1268, 1332, 1467 |
| MslI | CAYNNNNRTG | 2 cut(s) | 737, 1388 |
| MspA1I | CMGCKG | 1 cut(s) | 194 |
| MspCI | CTTAAG | 1 cut(s) | 919 |
| Mva1269I | GAATGC | 1 cut(s) | 962 |
| MvnI | CGCG | 1 cut(s) | 716 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 164, 179, 256, 1436, 1451, 1568 |
| NdeII | GATC | 6 cut(s) | 97, 296, 969, 1284, 1359, 1486 |
| NlaIII | CATG | 8 cut(s) | 348, 491, 576, 732, 736, 742, 825, 1360 |
| NlaIV | GGNNCC | 4 cut(s) | 177, 626, 859, 1548 |
| NmuCI | GTSAC | 2 cut(s) | 77, 698 |
| NsbI | TGCGCA | 1 cut(s) | 673 |
| NsiI | ATGCAT | 3 cut(s) | 574, 734, 1573 |
| NspI | RCATGY | 1 cut(s) | 825 |
| NspV | TTCGAA | 1 cut(s) | 1228 |
| PciI | ACATGT | 1 cut(s) | 821 |
| PctI | GAATGC | 1 cut(s) | 962 |
| PfeI | GAWTC | 7 cut(s) | 316, 590, 609, 656, 1023, 1199, 1250 |
| Pfl23II | CGTACG | 1 cut(s) | 513 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 605 |
| PkrI | GCNGC | 7 cut(s) | 36, 382, 637, 640, 1144, 1413, 1456 |
| PleI | GAGTC | 1 cut(s) | 1315 |
| PpsI | GAGTC | 1 cut(s) | 1315 |
| Ppu21I | YACGTR | 1 cut(s) | 1160 |
| PscI | ACATGT | 1 cut(s) | 821 |
| PshAI | GACNNNNGTC | 1 cut(s) | 705 |
| PsiI | TTATAA | 1 cut(s) | 393 |
| Psp124BI | GAGCTC | 1 cut(s) | 271 |
| PspFI | CCCAGC | 1 cut(s) | 194 |
| PspLI | CGTACG | 1 cut(s) | 513 |
| PspN4I | GGNNCC | 4 cut(s) | 177, 626, 859, 1548 |
| PspPI | GGNCC | 5 cut(s) | 176, 624, 858, 1498, 1546 |
| PstI | CTGCAG | 3 cut(s) | 39, 1144, 1416 |
| PvuII | CAGCTG | 1 cut(s) | 194 |
| RsaI | GTAC | 1 cut(s) | 515 |
| RsaNI | GTAC | 1 cut(s) | 514 |
| RseI | CAYNNNNRTG | 2 cut(s) | 737, 1388 |
| SacI | GAGCTC | 1 cut(s) | 271 |
| SaqAI | TTAA | 6 cut(s) | 503, 920, 1085, 1268, 1332, 1467 |
| SatI | GCNGC | 7 cut(s) | 35, 381, 636, 639, 1143, 1412, 1455 |
| Sau3AI | GATC | 6 cut(s) | 97, 296, 969, 1284, 1359, 1486 |
| Sau96I | GGNCC | 5 cut(s) | 176, 624, 858, 1498, 1546 |
| SchI | GAGTC | 1 cut(s) | 1315 |
| SduI | GDGCHC | 2 cut(s) | 271, 446 |
| SfaNI | GCATC | 6 cut(s) | 559, 981, 1154, 1170, 1426, 1558 |
| SfcI | CTRYAG | 4 cut(s) | 35, 1140, 1412, 1551 |
| SfuI | TTCGAA | 1 cut(s) | 1228 |
| SinI | GGWCC | 2 cut(s) | 1498, 1546 |
| SmiI | ATTTAAAT | 1 cut(s) | 1333 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 737, 1388 |
| SmlI | CTYRAG | 3 cut(s) | 159, 899, 919 |
| SmoI | CTYRAG | 3 cut(s) | 159, 899, 919 |
| SsiI | CCGC | 3 cut(s) | 173, 714, 1523 |
| SspMI | CTAG | 3 cut(s) | 252, 1115, 1238 |
| SstI | GAGCTC | 1 cut(s) | 271 |
| StyI | CCWWGG | 1 cut(s) | 251 |
| SwaI | ATTTAAAT | 1 cut(s) | 1333 |
| TaaI | ACNGT | 3 cut(s) | 469, 779, 1061 |
| TaiI | ACGT | 2 cut(s) | 1162, 1467 |
| TaqI | TCGA | 9 cut(s) | 74, 235, 271, 321, 480, 531, 1017, 1202, 1228 |
| TfiI | GAWTC | 7 cut(s) | 316, 590, 609, 656, 1023, 1199, 1250 |
| Tru1I | TTAA | 6 cut(s) | 503, 920, 1085, 1268, 1332, 1467 |
| Tru9I | TTAA | 6 cut(s) | 503, 920, 1085, 1268, 1332, 1467 |
| TscAI | CASTG | 5 cut(s) | 72, 474, 981, 1004, 1033 |
| TseFI | GTSAC | 2 cut(s) | 77, 698 |
| TseI | GCWGC | 7 cut(s) | 34, 380, 635, 638, 1142, 1411, 1454 |
| Tsp45I | GTSAC | 2 cut(s) | 77, 698 |
| TspDTI | ATGAA | 8 cut(s) | 267, 476, 717, 749, 1143, 1485, 1519, 1530 |
| TspGWI | ACGGA | 1 cut(s) | 894 |
| TspRI | CASTG | 5 cut(s) | 72, 474, 981, 1004, 1033 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 605 |
| Vha464I | CTTAAG | 1 cut(s) | 919 |
| VneI | GTGCAC | 1 cut(s) | 442 |
| VpaK11BI | GGWCC | 2 cut(s) | 1498, 1546 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1118 |
| XceI | RCATGY | 1 cut(s) | 825 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 973 |
| XmaJI | CCTAGG | 1 cut(s) | 251 |
| XmiI | GTMKAC | 1 cut(s) | 107 |
| XspI | CTAG | 3 cut(s) | 252, 1115, 1238 |
| Zsp2I | ATGCAT | 3 cut(s) | 574, 734, 1573 |