Prupe.5G061100_v2.0.a1

Protein of unknown function, DUF547

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
N/A
Physical Location & Seq
Forward (+)
6688364 .. 6694201
5838 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G061100.1_v2.0.a1.CDS.8

Sequence Viewer

Length: 1203 bp
ATGGTTGGTTTTATGTGTAACATAGCTGAAGAAAAAGAAAAATTTGAAGAACAAGCAGGTGGGATGAGAGAGAATGTAGATTCTGGGGCACGCTCAGCTGTTCATGCCCAACACAGGCGCTCTAAGAGTGCTTCTGACAGGAACTTAAATGTTCCAAGAAGTCGAGTTTCTGCGAAGAAGGACCAAAATGAAACGCAGGTTTCATCACCTTCAACAAGTGCGTCTAGGGGACAAAGTCCTTGGCATGACAATCTTATCAAACAGCTGCAGTTGCATTTGCAGCAAGAGAAATCTATGCGCCATATGCTCAAGGGGGCAATGGGCCGAGCATCAAGTACTCGATCACCTGGACATAGGCATTTCTCTGTCCAGACAAAGGAATTGATTTCTGAAATTGAAGTACTTGAAGAAGAAGTTGCAAACCTCGAGCAGCATCATTGCATTAGCAGGCCACCTTCTGAGCAGAACTCAGGTGTGGCTTCCCCTGCCCATATGAAGAATGGATCCAGGAAACATCCGAGTATCATTTCAAGTGCATTTTGTTCCTCAAAAAAAATCTTGGTTGAACAACTGGAGAGGGTGAATGTCCCTCTGATGGAATTGCATGCCCAAATTGCATTTTGGATCAACACATACAATGCTCTTGTTATGCATGCATATTTAGCATATGGACCTCCCCACAGCTCTCTAAGAAAGCTGGCCTTATTCCACAAGGCTGCTTACAATATTGGGGGCCAATGGCTTGAAACCCTCCTTTCAACTGCCTGGAGGAAAAAATTTGGTGAAGACAGACAACTTCGCAATTCCAAATTGGGTCTTCTGGTTTCTGAACCCCTTGTTTGCTTTGCTCTTTGTACTGGAGCCTTTTCTGATCCTGCGCTAAAAGTATACACAGCCTTAAATGTTAGAGATGAACTTGAAGAGGCAAAGGAGGAGTTTATTAAAGCAAATGTAGTGATACTTGAAAGGTTTGCAAGAGAAGCATCTTTTGGCTCTGATGATCTTCTCAAATGGGTCAGTGAGAATGCTGATAAGAAGCTTAATGATTCAATACATAAATGCATTGACAGTAAATCCAGCAAGAAGGCATCTCAGATCATAGAGTGGGTGCCATACAATTCAAGGTTCCAGTATGTATTCTCCAAGGAACTATCTGAGAGACCATGGTGGTTGTTATTCATTCCAAATGCTGGAAGATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF547 Lzipper-MIP1

Protein Analysis

401

Amino Acids

45.22

Weight (kDa)

9.11

Isoelectric Point (pI)

53.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 47
Acc36I ACCTGC 2 cut(s) 47, 187
AccB1I GGYRCC 1 cut(s) 1108
AccB7I CCANNNNNTGG 1 cut(s) 1190
AccI GTMKAC 1 cut(s) 888
AclWI GGATC 4 cut(s) 498, 511, 632, 866
AcsI RAATTY 2 cut(s) 41, 776
AcuI CTGAAG 1 cut(s) 48
AfaI GTAC 3 cut(s) 337, 402, 856
AfiI CCNNNNNNNGG 4 cut(s) 114, 376, 595, 1190
AjnI CCWGG 3 cut(s) 346, 506, 764
AjuI GAANNNNNNNTTGG 2 cut(s) 972, 1004
AluBI AGCT 6 cut(s) 26, 98, 265, 684, 697, 1039
AluI AGCT 6 cut(s) 26, 98, 265, 684, 697, 1039
Alw26I GTCTC 1 cut(s) 1153
AlwI GGATC 4 cut(s) 498, 511, 632, 866
Ama87I CYCGRG 1 cut(s) 425
AoxI GGCC 4 cut(s) 322, 449, 699, 733
ApeKI GCWGC 4 cut(s) 265, 280, 430, 716
ApoI RAATTY 2 cut(s) 41, 776
AspLEI GCGC 3 cut(s) 120, 300, 880
AspS9I GGNCC 4 cut(s) 181, 322, 671, 733
AsuHPI GGTGA 4 cut(s) 198, 336, 592, 794
AvaI CYCGRG 1 cut(s) 425
AvaII GGWCC 2 cut(s) 181, 671
BaeGI GKGCMC 1 cut(s) 91
BamHI GGATCC 1 cut(s) 503
BanI GGYRCC 1 cut(s) 1108
BbsI GAAGAC 2 cut(s) 792, 809
BbvI GCAGC 4 cut(s) 252, 292, 442, 703
BccI CCATC 1 cut(s) 589
BciT130I CCWGG 3 cut(s) 348, 508, 766
BcoDI GTCTC 1 cut(s) 1153
BfaI CTAG 1 cut(s) 225
BfmI CTRYAG 1 cut(s) 266
BfoI RGCGCY 1 cut(s) 121
BfuAI ACCTGC 2 cut(s) 47, 187
BisI GCNGC 4 cut(s) 266, 281, 431, 717
BlpI GCTNAGC 1 cut(s) 94
BlsI GCNGC 4 cut(s) 267, 282, 432, 718
BmcAI AGTACT 2 cut(s) 337, 402
Bme1390I CCNGG 3 cut(s) 348, 508, 766
Bme18I GGWCC 2 cut(s) 181, 671
BmeT110I CYCGRG 1 cut(s) 425
BmgT120I GGNCC 4 cut(s) 181, 322, 671, 733
BmiI GGNNCC 5 cut(s) 505, 734, 862, 1110, 1127
BmrFI CCNGG 3 cut(s) 348, 508, 766
BmsI GCATC 4 cut(s) 338, 442, 992, 1097
BpiI GAAGAC 2 cut(s) 792, 809
BplI GAGNNNNNCTC 2 cut(s) 452, 484
BpmI CTGGAG 3 cut(s) 593, 787, 879
Bpu1102I GCTNAGC 1 cut(s) 94
BpuEI CTTGAG 1 cut(s) 293
BsaI GGTCTC 1 cut(s) 1153
BsaJI CCNNGG 3 cut(s) 239, 1143, 1163
Bsc4I CCNNNNNNNGG 4 cut(s) 114, 376, 595, 1190
Bse1I ACTGG 3 cut(s) 576, 862, 1129
Bse3DI GCAATG 2 cut(s) 324, 436
BseBI CCWGG 3 cut(s) 348, 508, 766
BseDI CCNNGG 3 cut(s) 239, 1143, 1163
BseGI GGATG 2 cut(s) 69, 514
BseLI CCNNNNNNNGG 4 cut(s) 114, 376, 595, 1190
BseMI GCAATG 2 cut(s) 324, 436
BseMII CTCAG 5 cut(s) 108, 450, 483, 1106, 1146
BseNI ACTGG 3 cut(s) 576, 862, 1129
BseRI GAGGAG 1 cut(s) 947
BseSI GKGCMC 1 cut(s) 91
BseXI GCAGC 4 cut(s) 252, 292, 442, 703
BshFI GGCC 4 cut(s) 324, 451, 701, 735
BshNI GGYRCC 1 cut(s) 1108
BsiHKCI CYCGRG 1 cut(s) 425
BslFI GGGAC 2 cut(s) 243, 572
BslI CCNNNNNNNGG 4 cut(s) 114, 376, 595, 1190
BsmAI GTCTC 1 cut(s) 1153
BsmFI GGGAC 2 cut(s) 243, 572
BsmI GAATGC 1 cut(s) 1030
BsnI GGCC 4 cut(s) 324, 451, 701, 735
Bso31I GGTCTC 1 cut(s) 1153
BsoBI CYCGRG 1 cut(s) 425
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 6 cut(s) 341, 503, 624, 871, 1000, 1095
Bsp1720I GCTNAGC 1 cut(s) 94
Bsp19I CCATGG 1 cut(s) 1163
BspANI GGCC 4 cut(s) 324, 451, 701, 735
BspCNI CTCAG 5 cut(s) 107, 451, 482, 1105, 1147
BspLI GGNNCC 5 cut(s) 505, 734, 862, 1110, 1127
BspMAI CTGCAG 1 cut(s) 270
BspMI ACCTGC 2 cut(s) 47, 187
BspPI GGATC 4 cut(s) 498, 511, 632, 866
BspT107I GGYRCC 1 cut(s) 1108
BspTNI GGTCTC 1 cut(s) 1153
BsrDI GCAATG 2 cut(s) 324, 436
BsrI ACTGG 3 cut(s) 576, 862, 1129
BssECI CCNNGG 3 cut(s) 239, 1143, 1163
BssMI GATC 6 cut(s) 341, 503, 624, 871, 1000, 1095
BssNAI GTATAC 1 cut(s) 889
BssT1I CCWWGG 3 cut(s) 239, 1143, 1163
Bst1107I GTATAC 1 cut(s) 889
Bst2UI CCWGG 3 cut(s) 348, 508, 766
Bst4CI ACNGT 1 cut(s) 1070
Bst6I CTCTTC 1 cut(s) 915
BstC8I GCNNGC 5 cut(s) 91, 449, 606, 654, 699
BstDEI CTNAG 7 cut(s) 94, 123, 459, 469, 689, 1092, 1155
BstDSI CCRYGG 1 cut(s) 1163
BstF5I GGATG 2 cut(s) 69, 514
BstH2I RGCGCY 1 cut(s) 121
BstHHI GCGC 3 cut(s) 120, 300, 880
BstKTI GATC 6 cut(s) 344, 506, 627, 874, 1003, 1098
BstMAI GTCTC 1 cut(s) 1153
BstMBI GATC 6 cut(s) 341, 503, 624, 871, 1000, 1095
BstMWI GCNNNNNNNGC 9 cut(s) 95, 104, 271, 280, 304, 485, 614, 662, 980
BstNI CCWGG 3 cut(s) 348, 508, 766
BstNSI RCATGY 2 cut(s) 608, 656
BstSCI CCNGG 3 cut(s) 346, 506, 764
BstSFI CTRYAG 1 cut(s) 266
BstSLI GKGCMC 1 cut(s) 91
BstV1I GCAGC 4 cut(s) 252, 292, 442, 703
BstV2I GAAGAC 2 cut(s) 792, 809
BstX2I RGATCY 1 cut(s) 503
BstYI RGATCY 1 cut(s) 503
BstZ17I GTATAC 1 cut(s) 889
BsuRI GGCC 4 cut(s) 324, 451, 701, 735
BtgI CCRYGG 1 cut(s) 1163
BtsCI GGATG 2 cut(s) 69, 514
BtsIMutI CAGTG 1 cut(s) 1024
BveI ACCTGC 2 cut(s) 47, 187
Cac8I GCNNGC 5 cut(s) 91, 449, 606, 654, 699
CfoI GCGC 3 cut(s) 120, 300, 880
Cfr13I GGNCC 4 cut(s) 181, 322, 671, 733
CseI GACGC 1 cut(s) 210
Csp6I GTAC 3 cut(s) 336, 401, 855
CviAII CATG 5 cut(s) 104, 245, 605, 653, 1164
CviQI GTAC 3 cut(s) 336, 401, 855
DdeI CTNAG 7 cut(s) 94, 123, 459, 469, 689, 1092, 1155
DpnI GATC 6 cut(s) 343, 505, 626, 873, 1002, 1097
DpnII GATC 6 cut(s) 341, 503, 624, 871, 1000, 1095
Eam1104I CTCTTC 1 cut(s) 915
EarI CTCTTC 1 cut(s) 915
Eco130I CCWWGG 3 cut(s) 239, 1143, 1163
Eco31I GGTCTC 1 cut(s) 1153
Eco47I GGWCC 2 cut(s) 181, 671
Eco57I CTGAAG 1 cut(s) 48
Eco88I CYCGRG 1 cut(s) 425
EcoRII CCWGG 3 cut(s) 346, 506, 764
EcoT14I CCWWGG 3 cut(s) 239, 1143, 1163
EcoT22I ATGCAT 3 cut(s) 654, 658, 1064
ErhI CCWWGG 3 cut(s) 239, 1143, 1163
FaeI CATG 5 cut(s) 107, 248, 608, 656, 1167
FalI AAGNNNNNCTT 2 cut(s) 686, 718
FaqI GGGAC 2 cut(s) 243, 572
FatI CATG 5 cut(s) 103, 244, 604, 652, 1163
FauNDI CATATG 3 cut(s) 303, 492, 667
FblI GTMKAC 1 cut(s) 888
Fnu4HI GCNGC 4 cut(s) 266, 281, 431, 717
FokI GGATG 2 cut(s) 76, 501
Fsp4HI GCNGC 4 cut(s) 266, 281, 431, 717
FspBI CTAG 1 cut(s) 225
GlaI GCGC 3 cut(s) 119, 299, 879
GluI GCNGC 4 cut(s) 266, 281, 431, 717
GsuI CTGGAG 3 cut(s) 593, 787, 879
HaeII RGCGCY 1 cut(s) 121
HaeIII GGCC 4 cut(s) 324, 451, 701, 735
HgaI GACGC 1 cut(s) 210
HhaI GCGC 3 cut(s) 120, 300, 880
Hin1II CATG 5 cut(s) 107, 248, 608, 656, 1167
Hin6I GCGC 3 cut(s) 118, 298, 878
HinP1I GCGC 3 cut(s) 118, 298, 878
HindIII AAGCTT 1 cut(s) 1037
HinfI GANTC 2 cut(s) 80, 1046
HphI GGTGA 4 cut(s) 198, 336, 592, 794
Hpy166II GTNNAC 1 cut(s) 889
Hpy188III TCNNGA 1 cut(s) 370
Hpy8I GTNNAC 1 cut(s) 889
HpyAV CCTTC 4 cut(s) 172, 219, 465, 1078
HpyCH4III ACNGT 1 cut(s) 1070
HpyF10VI GCNNNNNNNGC 9 cut(s) 95, 104, 271, 280, 304, 485, 614, 662, 980
HpyF3I CTNAG 7 cut(s) 94, 123, 459, 469, 689, 1092, 1155
Hsp92II CATG 5 cut(s) 107, 248, 608, 656, 1167
HspAI GCGC 3 cut(s) 118, 298, 878
Kzo9I GATC 6 cut(s) 341, 503, 624, 871, 1000, 1095
LmnI GCTCC 1 cut(s) 860
Lsp1109I GCAGC 4 cut(s) 252, 292, 442, 703
LweI GCATC 4 cut(s) 338, 442, 992, 1097
MaeI CTAG 1 cut(s) 225
MaeIII GTNAC 1 cut(s) 17
MalI GATC 6 cut(s) 343, 505, 626, 873, 1002, 1097
MboI GATC 6 cut(s) 341, 503, 624, 871, 1000, 1095
MflI RGATCY 1 cut(s) 503
MhlI GDGCHC 1 cut(s) 91
MluCI AATT 9 cut(s) 41, 380, 393, 599, 612, 776, 802, 809, 1117
MnlI CCTC 9 cut(s) 434, 556, 570, 600, 684, 761, 762, 916, 925
Mph1103I ATGCAT 3 cut(s) 654, 658, 1064
MseI TTAA 5 cut(s) 146, 899, 942, 1041, 1201
MspA1I CMGCKG 2 cut(s) 98, 265
MspR9I CCNGG 3 cut(s) 348, 508, 766
Mva1269I GAATGC 1 cut(s) 1030
MvaI CCWGG 3 cut(s) 348, 508, 766
MwoI GCNNNNNNNGC 9 cut(s) 95, 104, 271, 280, 304, 485, 614, 662, 980
NcoI CCATGG 1 cut(s) 1163
NdeI CATATG 3 cut(s) 303, 492, 667
NdeII GATC 6 cut(s) 341, 503, 624, 871, 1000, 1095
NlaIII CATG 5 cut(s) 107, 248, 608, 656, 1167
NlaIV GGNNCC 5 cut(s) 505, 734, 862, 1110, 1127
NmeAIII GCCGAG 1 cut(s) 350
NsiI ATGCAT 3 cut(s) 654, 658, 1064
NspI RCATGY 2 cut(s) 608, 656
PaeI GCATGC 2 cut(s) 608, 656
PaeR7I CTCGAG 1 cut(s) 425
PaqCI CACCTGC 1 cut(s) 47
PctI GAATGC 1 cut(s) 1030
PfeI GAWTC 2 cut(s) 80, 1046
PflFI GACNNNGTC 1 cut(s) 234
PflMI CCANNNNNTGG 1 cut(s) 1190
PfoI TCCNGGA 1 cut(s) 506
PkrI GCNGC 4 cut(s) 267, 282, 432, 718
Psp6I CCWGG 3 cut(s) 346, 506, 764
PspGI CCWGG 3 cut(s) 346, 506, 764
PspN4I GGNNCC 5 cut(s) 505, 734, 862, 1110, 1127
PspPI GGNCC 4 cut(s) 181, 322, 671, 733
PspXI VCTCGAGB 1 cut(s) 425
PstI CTGCAG 1 cut(s) 270
PsuI RGATCY 1 cut(s) 503
PsyI GACNNNGTC 1 cut(s) 234
PvuII CAGCTG 2 cut(s) 98, 265
RsaI GTAC 3 cut(s) 337, 402, 856
RsaNI GTAC 3 cut(s) 336, 401, 855
SaqAI TTAA 5 cut(s) 146, 899, 942, 1041, 1201
SatI GCNGC 4 cut(s) 266, 281, 431, 717
Sau3AI GATC 6 cut(s) 341, 503, 624, 871, 1000, 1095
Sau96I GGNCC 4 cut(s) 181, 322, 671, 733
ScaI AGTACT 2 cut(s) 337, 402
ScrFI CCNGG 3 cut(s) 348, 508, 766
SduI GDGCHC 1 cut(s) 91
SfaNI GCATC 4 cut(s) 338, 442, 992, 1097
SfcI CTRYAG 1 cut(s) 266
Sfr274I CTCGAG 1 cut(s) 425
SinI GGWCC 2 cut(s) 181, 671
SlaI CTCGAG 1 cut(s) 425
SmlI CTYRAG 2 cut(s) 308, 425
SmoI CTYRAG 2 cut(s) 308, 425
SphI GCATGC 2 cut(s) 608, 656
Sse9I AATT 9 cut(s) 41, 380, 393, 599, 612, 776, 802, 809, 1117
SspI AATATT 1 cut(s) 727
SspMI CTAG 1 cut(s) 225
StyD4I CCNGG 3 cut(s) 346, 506, 764
StyI CCWWGG 3 cut(s) 239, 1143, 1163
TaaI ACNGT 1 cut(s) 1070
TaqI TCGA 3 cut(s) 163, 340, 426
TasI AATT 9 cut(s) 41, 380, 393, 599, 612, 776, 802, 809, 1117
TatI WGTACW 3 cut(s) 335, 400, 854
TfiI GAWTC 2 cut(s) 80, 1046
Tru1I TTAA 5 cut(s) 146, 899, 942, 1041, 1201
Tru9I TTAA 5 cut(s) 146, 899, 942, 1041, 1201
TscAI CASTG 1 cut(s) 1024
TseI GCWGC 4 cut(s) 265, 280, 430, 716
TspDTI ATGAA 6 cut(s) 92, 192, 204, 509, 927, 1168
TspRI CASTG 1 cut(s) 1024
Tth111I GACNNNGTC 1 cut(s) 234
Van91I CCANNNNNTGG 1 cut(s) 1190
VpaK11BI GGWCC 2 cut(s) 181, 671
XapI RAATTY 2 cut(s) 41, 776
XceI RCATGY 2 cut(s) 608, 656
XcmI CCANNNNNNNNNTGG 1 cut(s) 497
XhoI CTCGAG 1 cut(s) 425
XmiI GTMKAC 1 cut(s) 888
XspI CTAG 1 cut(s) 225
ZrmI AGTACT 2 cut(s) 337, 402
Zsp2I ATGCAT 3 cut(s) 654, 658, 1064
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.