Prupe.5G067200_v2.0.a1

Auxin canalisation

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
N/A
Physical Location & Seq
Reverse (-)
8149458 .. 8150143
686 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G067200.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 471 bp
ATGGAAAGTGGTTATTTTTCAGCTTGGAAGAGTGCTGGTTCTTTGCATGGGCTACAACATGTAGTAGAGGAAGCTATGGAGATGAAAATAGTGGCAACCTTGCCTGCAATCCCTCAGCCACAAACACCACAGGAGCCTATGGAGTTTTTGTCAAGGTCATGGAGTCTTTCTGCTTCAGAAATCTCAAGGGCTCTTGCTCAAAAGCAGAAGCAAATTTTACTTGAAAAAAGTCCTGACAAATTCCCAGAAGCAACTGTTGTGCCACAACTAACAGGAAAGATTATAAAGTCTGTTAATACTCGGAGAACGAAGTCTATGGGCAAATGGTTCCACCATAAGGAGTTCACTAGTAGCACAGTGAAGAAGAAAGATAAGGAACGGGTAGAAAGAGCACGAGTGCATTATGCTGTCTCCATTGCAGGAGTTGTTGCTGCCTTGGCTGCTGTAACTGACTGCAGCAGAAAACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

157

Amino Acids

17.39

Weight (kDa)

9.81

Isoelectric Point (pI)

47.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 284
AcsI RAATTY 2 cut(s) 213, 239
AcuI CTGAAG 1 cut(s) 159
AfiI CCNNNNNNNGG 1 cut(s) 337
AflIII ACRYGT 1 cut(s) 58
AgsI TTSAA 1 cut(s) 224
AhlI ACTAGT 1 cut(s) 347
AluBI AGCT 2 cut(s) 23, 74
AluI AGCT 2 cut(s) 23, 74
Alw21I GWGCWC 1 cut(s) 394
Alw26I GTCTC 1 cut(s) 415
ApeKI GCWGC 3 cut(s) 431, 440, 456
ApoI RAATTY 2 cut(s) 213, 239
BanII GRGCYC 1 cut(s) 193
BauI CACGAG 1 cut(s) 393
Bbv12I GWGCWC 1 cut(s) 394
BbvCI CCTCAGC 1 cut(s) 114
BbvI GCAGC 2 cut(s) 418, 427
BcoDI GTCTC 1 cut(s) 415
BcuI ACTAGT 1 cut(s) 347
BfaI CTAG 2 cut(s) 348, 469
BfmI CTRYAG 1 cut(s) 454
BisI GCNGC 3 cut(s) 432, 441, 457
BlsI GCNGC 3 cut(s) 433, 442, 458
BmiI GGNNCC 2 cut(s) 135, 329
Bpu10I CCTNAGC 1 cut(s) 114
BpuEI CTTGAG 1 cut(s) 169
BsaJI CCNNGG 1 cut(s) 435
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 1 cut(s) 337
Bse3DI GCAATG 1 cut(s) 414
BseDI CCNNGG 1 cut(s) 435
BseLI CCNNNNNNNGG 1 cut(s) 337
BseMI GCAATG 1 cut(s) 414
BseMII CTCAG 1 cut(s) 128
BseXI GCAGC 2 cut(s) 418, 427
BsiHKAI GWGCWC 1 cut(s) 394
BslI CCNNNNNNNGG 1 cut(s) 337
BsmAI GTCTC 1 cut(s) 415
Bsp1286I GDGCHC 2 cut(s) 193, 394
BspCNI CTCAG 1 cut(s) 127
BspLI GGNNCC 2 cut(s) 135, 329
BspMAI CTGCAG 1 cut(s) 458
BsrDI GCAATG 1 cut(s) 414
BssECI CCNNGG 1 cut(s) 435
BssSI CACGAG 1 cut(s) 393
BssT1I CCWWGG 1 cut(s) 435
Bst2BI CACGAG 1 cut(s) 393
Bst4CI ACNGT 2 cut(s) 256, 358
Bst6I CTCTTC 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 1 cut(s) 114
BstMAI GTCTC 1 cut(s) 415
BstMWI GCNNNNNNNGC 2 cut(s) 437, 440
BstNSI RCATGY 1 cut(s) 62
BstSFI CTRYAG 1 cut(s) 454
BstV1I GCAGC 2 cut(s) 418, 427
BtsIMutI CAGTG 1 cut(s) 363
Cac8I GCNNGC 1 cut(s) 105
CviAII CATG 3 cut(s) 47, 59, 159
CviJI RGCY 7 cut(s) 23, 52, 74, 118, 136, 191, 440
CviKI_1 RGCY 7 cut(s) 23, 52, 74, 118, 136, 191, 440
DdeI CTNAG 1 cut(s) 114
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
Eco130I CCWWGG 1 cut(s) 435
Eco24I GRGCYC 1 cut(s) 193
Eco57I CTGAAG 1 cut(s) 159
EcoT14I CCWWGG 1 cut(s) 435
EcoT38I GRGCYC 1 cut(s) 193
ErhI CCWWGG 1 cut(s) 435
FaeI CATG 3 cut(s) 50, 62, 162
FaiI YATR 9 cut(s) 48, 60, 77, 140, 160, 284, 317, 336, 405
FatI CATG 3 cut(s) 46, 58, 158
Fnu4HI GCNGC 3 cut(s) 432, 441, 457
FriOI GRGCYC 1 cut(s) 193
Fsp4HI GCNGC 3 cut(s) 432, 441, 457
FspBI CTAG 2 cut(s) 348, 469
GluI GCNGC 3 cut(s) 432, 441, 457
Hin1II CATG 3 cut(s) 50, 62, 162
HinfI GANTC 1 cut(s) 163
Hpy166II GTNNAC 1 cut(s) 345
Hpy188I TCNGA 2 cut(s) 178, 303
Hpy188III TCNNGA 1 cut(s) 233
Hpy8I GTNNAC 1 cut(s) 345
HpyCH4III ACNGT 2 cut(s) 256, 358
HpyCH4V TGCA 5 cut(s) 46, 107, 400, 419, 456
HpyF10VI GCNNNNNNNGC 2 cut(s) 437, 440
HpyF3I CTNAG 1 cut(s) 114
Hsp92II CATG 3 cut(s) 50, 62, 162
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 7 cut(s) 21, 116, 117, 246, 258, 258, 405
Lsp1109I GCAGC 2 cut(s) 418, 427
MaeI CTAG 2 cut(s) 348, 469
MaeIII GTNAC 1 cut(s) 445
MboII GAAGA 3 cut(s) 40, 373, 376
MhlI GDGCHC 2 cut(s) 193, 394
MluCI AATT 2 cut(s) 213, 239
MlyI GAGTC 1 cut(s) 172
MnlI CCTC 2 cut(s) 61, 123
MseI TTAA 1 cut(s) 294
MwoI GCNNNNNNNGC 2 cut(s) 437, 440
NlaIII CATG 3 cut(s) 50, 62, 162
NlaIV GGNNCC 2 cut(s) 135, 329
NspI RCATGY 1 cut(s) 62
PciI ACATGT 1 cut(s) 58
PkrI GCNGC 3 cut(s) 433, 442, 458
PleI GAGTC 1 cut(s) 171
PpsI GAGTC 1 cut(s) 171
PscI ACATGT 1 cut(s) 58
PsiI TTATAA 1 cut(s) 284
PspN4I GGNNCC 2 cut(s) 135, 329
PstI CTGCAG 1 cut(s) 458
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 3 cut(s) 432, 441, 457
SchI GAGTC 1 cut(s) 172
SduI GDGCHC 2 cut(s) 193, 394
SetI ASST 4 cut(s) 25, 76, 101, 158
SfcI CTRYAG 1 cut(s) 454
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
SpeI ACTAGT 1 cut(s) 347
Sse9I AATT 2 cut(s) 213, 239
SspMI CTAG 2 cut(s) 348, 469
StyI CCWWGG 1 cut(s) 435
TaaI ACNGT 2 cut(s) 256, 358
TasI AATT 2 cut(s) 213, 239
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TscAI CASTG 1 cut(s) 363
TseI GCWGC 3 cut(s) 431, 440, 456
TspDTI ATGAA 1 cut(s) 98
TspRI CASTG 1 cut(s) 363
XapI RAATTY 2 cut(s) 213, 239
XceI RCATGY 1 cut(s) 62
XspI CTAG 2 cut(s) 348, 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.