Prupe.5G069500_v2.0.a1

Small nuclear ribonucleoprotein SM

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
8353211 .. 8355653
2443 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G069500.2_v2.0.a1.CDS.1

Sequence Viewer

Length: 207 bp
ATGGACATTGGAACATGGTTCTCGAAAAATGGCAGGGAGATGTGGACTGAGGTAGCAAAAACTGGAAAAGGCAAGAAAAAGGCTCAAGCAGTTAACGAAGATAGATTCATTAGTAAGATGTATGGTGGCATTGTCCATTATAAAGATATGCAGAAATCGATGCTTAAAATCGTAGTGCTTGGTTGGGAATTTAACTACCCTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

69

Amino Acids

7.95

Weight (kDa)

9.65

Isoelectric Point (pI)

15.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 141
AcsI RAATTY 1 cut(s) 188
ApoI RAATTY 1 cut(s) 188
BmsI GCATC 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 69
Bsa29I ATCGAT 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 67
BseCI ATCGAT 1 cut(s) 158
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 67
BshVI ATCGAT 1 cut(s) 158
BspCNI CTCAG 1 cut(s) 40
BspDI ATCGAT 1 cut(s) 158
BsrI ACTGG 1 cut(s) 67
BstDEI CTNAG 1 cut(s) 48
Bsu15I ATCGAT 1 cut(s) 158
BsuTUI ATCGAT 1 cut(s) 158
ClaI ATCGAT 1 cut(s) 158
CviAII CATG 1 cut(s) 15
CviJI RGCY 1 cut(s) 83
CviKI_1 RGCY 1 cut(s) 83
DdeI CTNAG 1 cut(s) 48
FaeI CATG 1 cut(s) 18
FaiI YATR 4 cut(s) 16, 123, 141, 149
FatI CATG 1 cut(s) 14
Hin1II CATG 1 cut(s) 18
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HinfI GANTC 1 cut(s) 105
HpaI GTTAAC 1 cut(s) 94
Hpy166II GTNNAC 2 cut(s) 45, 94
Hpy188III TCNNGA 1 cut(s) 22
Hpy8I GTNNAC 2 cut(s) 45, 94
HpyCH4V TGCA 1 cut(s) 151
HpyF3I CTNAG 1 cut(s) 48
Hsp92II CATG 1 cut(s) 18
KspAI GTTAAC 1 cut(s) 94
LpnPI CCDG 2 cut(s) 19, 48
LweI GCATC 1 cut(s) 150
MboII GAAGA 1 cut(s) 110
MluCI AATT 1 cut(s) 188
MnlI CCTC 1 cut(s) 43
MseI TTAA 3 cut(s) 93, 165, 192
NlaIII CATG 1 cut(s) 18
PfeI GAWTC 1 cut(s) 105
PsiI TTATAA 1 cut(s) 141
SaqAI TTAA 3 cut(s) 93, 165, 192
SetI ASST 1 cut(s) 54
SfaNI GCATC 1 cut(s) 150
SgeI CNNG 7 cut(s) 27, 34, 46, 75, 85, 98, 191
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
Sse9I AATT 1 cut(s) 188
TaqI TCGA 2 cut(s) 23, 158
TasI AATT 1 cut(s) 188
TfiI GAWTC 1 cut(s) 105
Tru1I TTAA 3 cut(s) 93, 165, 192
Tru9I TTAA 3 cut(s) 93, 165, 192
TspDTI ATGAA 1 cut(s) 97
XapI RAATTY 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.